Cp4.1LG08g00600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG08 : 4031048 .. 4033438 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTACGACGGTATTATAGCCATTTTGAATCGGATACTCTTCTAATCTCTTTTTCTTTTTAATGTCATTTTCTTCTTTTTTATTTTTATTTTATTTTTTTGTTCATAACCCTCTTCCTCTCTGCCTATAAGTAACCCTAAAACACACATCTCTGAGCTTAACTTTCCCATATCTCCTTTTCTATTATCTTCCCTCACCAAACAAACACTTTTTATTTTCACGATGGCGGGTCGTCTTCGTCGCTCGATGTTTCGTCTTTCTTCCTTTAAGCGACCTTTTATCCATGGTGGCAGTAATTCAAGACAAGATTCAGGTCGATATCCTTCAACCAGCAAAGAGTCGTCGATGGAACCACGGGCTCGCTCACCGTCGGTTTCGCCCAAGAGAGAGTCCGTTGCTGCTTCTCCGACGTACTCTGTGAAGAAGGTTGCTTCACCGTCTCCTTCTCCATCGTATGGAGGTTCAAGTGGAGGAGTGATGAGCTCACAACCGAAGGCTGTAGATGAATACGTTAAGGATAAACCAACTACTCAACCCAGGTTGATTACACTAAACTCAAACACTTCTTCATGTTAGTCATCATCTATATGCTAAGGACCATTCATTGCACGTCAATCGTGGTTTATATTAAAAACAAAATTTGCATGTCGATCTGATTACCATCTATGCTAATAGGTTATGATTTATGACATATTAGTTTAGTTATGTTGATGAGATCCCACTCGATGAGAAGAACAAAACATTTTTTATAAGAGTGGAAATCTCTGCTTAGGGTTTTAGAAACCTTGAGGCAAAATCTGAAAAAGAAAGCCTATAAGAGGACAATATCTACTAGCGATGTGTTTGGGCCGTTACAAATGATATTAGAGCTAGACACCGAGCGATGTGCTGCTGAGCTTCGAAGGGAGTGGACACGAGGCGGTGTGCTAGGACGCTGGACACAAAGTGGTGTGCCACAAAGACACTGGCCCCAAGGGGTGGACATGAAGTGGTGTGCCAGCAAGGACGTTGGACCCCAAAAGGGGTGGACACAAAGTGGTGTGCCAGCAAAGACGCTGGCCCCAAGGGGTGGACACGAAGTGGTGTGCCAGCAAGAACGTTGGACCCCGAAAGGGGTGGACACAAAGTGGTGTGCCAGCAAAGACGCTGGCCCCAAGGGGTGGACACAAAGCGGTGTGTCAGCAAAGACGCTGGGCCTCGAAGGGGGTAGCCATAAAACGGTGTGCCAGCAAGGATGCTAGGCCCCGAATGGGATGGATTTGGTGGGTCCCACATCGATGGGTGAAAGAAACAGTGCTAGCGAGGACGTTGGGCCTTGAAGGGGATGAATTGTGAGATACCAGTTGGGGTGGAGAATAAAGACGTTAGGCCCTGAAGGGGGTGGATTGTGAGATCCCAGTTGGAGTGGAGAACGAAACACTCTTTATAAATGTGTGAAAAAGTGGAAACCTTTCTCTAACATATGCGTTTTAAAAACCTTATGACATATGCGTTTTAAAAACCTTATGGACAAATCTGATAGGGAAAACTCGAAGAATACGGGCTAGCTGATATATTACAAACTATGATATATTTAGTCATTTACTCATATTCTTAACACAGATCACCTGAAACCGAGCCTAAAGCGGTGGTCGGAAAAGCCATGAAGAAAGTGACTGATTCGGATCGTCACGTCGAGTCGAGCAAAAGGACGATGACATCCCACAAGCATGAGCCAAATACAATAAAGATTGCAGGAGAAAATCATGGGGCAGTAATGGAAATCTTCGAGTTAAAAGGGGAAGAGAGAGATATGATAGAGAAGAAAGAGAGATTTAGAAGAACATTAAGCAGCAAGGCCAATGATCAAAACAAGGAAGGCTCTAAGGACCACAGGGGCGAAAGCACTTATTTGAACAGCAATGTTCAGGGCGTAAACAATTCTATTCTTTACGGTGCTTCTTTGGCTCACCATGACCCGGGTTTGCACCACGCTCTCTCCTTAAAACCACGAGTAACCTCATGATTGGGGTCGGGAAATGTAATCACATGATTAAGTATATTTAGTATTAAATTATAGTTTACCAGCAAATATCTAGATATTTGTCTTCTTGCCGTGTTATTTTCATTTATTACTATTTTCATATCCTTGTAATTTATTTAATTATAAATAAAGAACTTTCACACACATTTAGGTGCGGTGGATTAAGCAAACATTCTCAACATGCAATCATAGTGAAACCTATCTTTTCATAAAACATCATATTAGTTTAGATGTGTAATATTTCTCTACCCACAGCATACGCACGCACACATGGACCCTATAAGGTGAGCATATACGTGGTCTAAGTCTGCCCTTCAATTAGTCATGCTCATGTAGCCGGAACCATTGAGGGAAAAGAGCCTACATAA

mRNA sequence

TTGTACGACGGTATTATAGCCATTTTGAATCGGATACTCTTCTAATCTCTTTTTCTTTTTAATGTCATTTTCTTCTTTTTTATTTTTATTTTATTTTTTTGTTCATAACCCTCTTCCTCTCTGCCTATAAGTAACCCTAAAACACACATCTCTGAGCTTAACTTTCCCATATCTCCTTTTCTATTATCTTCCCTCACCAAACAAACACTTTTTATTTTCACGATGGCGGGTCGTCTTCGTCGCTCGATGTTTCGTCTTTCTTCCTTTAAGCGACCTTTTATCCATGGTGGCAGTAATTCAAGACAAGATTCAGGTCGATATCCTTCAACCAGCAAAGAGTCGTCGATGGAACCACGGGCTCGCTCACCGTCGGTTTCGCCCAAGAGAGAGTCCGTTGCTGCTTCTCCGACGTACTCTGTGAAGAAGGTTGCTTCACCGTCTCCTTCTCCATCGTATGGAGGTTCAAGTGGAGGAGTGATGAGCTCACAACCGAAGGCTGTAGATGAATACGTTAAGGATAAACCAACTACTCAACCCAGATCACCTGAAACCGAGCCTAAAGCGGTGGTCGGAAAAGCCATGAAGAAAGTGACTGATTCGGATCGTCACGTCGAGTCGAGCAAAAGGACGATGACATCCCACAAGCATGAGCCAAATACAATAAAGATTGCAGGAGAAAATCATGGGGCAGTAATGGAAATCTTCGAGTTAAAAGGGGAAGAGAGAGATATGATAGAGAAGAAAGAGAGATTTAGAAGAACATTAAGCAGCAAGGCCAATGATCAAAACAAGGAAGGCTCTAAGGACCACAGGGGCGAAAGCACTTATTTGAACAGCAATGTTCAGGGCGTAAACAATTCTATTCTTTACGGTGCTTCTTTGGCTCACCATGACCCGGCCGGAACCATTGAGGGAAAAGAGCCTACATAA

Coding sequence (CDS)

ATGGCGGGTCGTCTTCGTCGCTCGATGTTTCGTCTTTCTTCCTTTAAGCGACCTTTTATCCATGGTGGCAGTAATTCAAGACAAGATTCAGGTCGATATCCTTCAACCAGCAAAGAGTCGTCGATGGAACCACGGGCTCGCTCACCGTCGGTTTCGCCCAAGAGAGAGTCCGTTGCTGCTTCTCCGACGTACTCTGTGAAGAAGGTTGCTTCACCGTCTCCTTCTCCATCGTATGGAGGTTCAAGTGGAGGAGTGATGAGCTCACAACCGAAGGCTGTAGATGAATACGTTAAGGATAAACCAACTACTCAACCCAGATCACCTGAAACCGAGCCTAAAGCGGTGGTCGGAAAAGCCATGAAGAAAGTGACTGATTCGGATCGTCACGTCGAGTCGAGCAAAAGGACGATGACATCCCACAAGCATGAGCCAAATACAATAAAGATTGCAGGAGAAAATCATGGGGCAGTAATGGAAATCTTCGAGTTAAAAGGGGAAGAGAGAGATATGATAGAGAAGAAAGAGAGATTTAGAAGAACATTAAGCAGCAAGGCCAATGATCAAAACAAGGAAGGCTCTAAGGACCACAGGGGCGAAAGCACTTATTTGAACAGCAATGTTCAGGGCGTAAACAATTCTATTCTTTACGGTGCTTCTTTGGCTCACCATGACCCGGCCGGAACCATTGAGGGAAAAGAGCCTACATAA

Protein sequence

MAGRLRRSMFRLSSFKRPFIHGGSNSRQDSGRYPSTSKESSMEPRARSPSVSPKRESVAASPTYSVKKVASPSPSPSYGGSSGGVMSSQPKAVDEYVKDKPTTQPRSPETEPKAVVGKAMKKVTDSDRHVESSKRTMTSHKHEPNTIKIAGENHGAVMEIFELKGEERDMIEKKERFRRTLSSKANDQNKEGSKDHRGESTYLNSNVQGVNNSILYGASLAHHDPAGTIEGKEPT

Homology

[Close]

BLAST of Cp4.1LG08g00600 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 118/243 (48.56%), Postives = 150/243 (61.73%), Query Frame = 1


Query: 1   MAGRLRRSMFRLSSFKRPFIHGGSNSRQDSG-----RYPSTSKESSMEPRARSPSVSPKR 60
           MAGR    ++R SS  RP     + S QDS      RYPS+++++S+EPR+  P V+ +R
Sbjct: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYPSSARDTSLEPRSSPPRVALRR 60

Query: 61  ES--VAASPTYSVKKVASPSPSPSYGGSSGGVMSSQPKAVDEYVKDKPTTQPRSPETEPK 120
           +   + ASPTYS+KK  SP  SPSY   +   +SS  K VDEY K KP TQPRSPE + K
Sbjct: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120

Query: 121 AVV--GKAMKKVTDSDRHVESSKRTMTSHKH--EPNTIKIAGENHGAVMEIFE-LKGEER 180
             +     ++KVT SDR+ ESSK T++SHK   +PN I I GEN GAVMEI E  K E  
Sbjct: 121 PGIFHKSTVEKVTKSDRYHESSK-TLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGG 180

Query: 181 DMIEK-KERFRRTLSSK--ANDQNKEGSKDHRGE---STYLNSNVQGVNNSILYGASLAH 226
            MI+K KE  R  L++   ANDQN E SK        +T+LNSN Q VNNS+LY A+L H
Sbjct: 181 HMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTH 240

[Close]

BLAST of Cp4.1LG08g00600 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 113/241 (46.89%), Postives = 145/241 (60.17%), Query Frame = 1


Query: 1   MAGRLRRSMFRLSSFKRPFIHGGSNSRQDSGRY-----PSTSKESSMEPRARSPSVSPKR 60
           MAGR    M+R SS  RP     + S QDS +Y     PS ++++S+EPR+  P +S ++
Sbjct: 1   MAGRNFGRMYRFSSANRPLAPATNTSGQDSAQYDRRQYPSATRDTSLEPRSSPPRISLRK 60

Query: 61  ES--VAASPTYSVKKVASPSPSPSYGGSSGGVMSSQPKAVDEYVKDKPTTQPRSPETEPK 120
           +   + ASPTYS+KK  SP  SP Y G +   +SS PK VDEY K KP TQPRSPE + K
Sbjct: 61  DDPPLPASPTYSIKKATSPPSSPPYRGMAAREISSPPKMVDEYPKYKPITQPRSPEAKQK 120

Query: 121 AVVGK--AMKKVTDSDRHVESSKRTMTSHKHEPNTIKIAGENHGAVMEIFE-LKGEERDM 180
             + K   ++KVT SDR+ E SK   +    +PN I I GEN GAVMEI E  K E   M
Sbjct: 121 PGIHKTTTVEKVTKSDRYHEPSKAVSSHKGQQPNAINIKGENVGAVMEIVESSKREGGHM 180

Query: 181 IEK-KERFRRTLSSK--ANDQNKEGSKDHRGE---STYLNSNVQGVNNSILYGASLAHHD 226
           I+K KE  R  L++   ANDQN E SK        +T+LNSN Q VNNS+LY A+L + D
Sbjct: 181 IKKIKETARGILNNNDMANDQNNEASKTTNSSMPTNTFLNSNFQSVNNSLLYNANLTYRD 240

[Close]

BLAST of Cp4.1LG08g00600 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 118/243 (48.56%), Postives = 150/243 (61.73%), Query Frame = 1


Query: 1   MAGRLRRSMFRLSSFKRPFIHGGSNSRQDSG-----RYPSTSKESSMEPRARSPSVSPKR 60
           MAGR    ++R SS  RP     + S QDS      RYPS+++++S+EPR+  P V+ +R
Sbjct: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYPSSARDTSLEPRSSPPRVALRR 60

Query: 61  ES--VAASPTYSVKKVASPSPSPSYGGSSGGVMSSQPKAVDEYVKDKPTTQPRSPETEPK 120
           +   + ASPTYS+KK  SP  SPSY   +   +SS  K VDEY K KP TQPRSPE + K
Sbjct: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120

Query: 121 AVV--GKAMKKVTDSDRHVESSKRTMTSHKH--EPNTIKIAGENHGAVMEIFE-LKGEER 180
             +     ++KVT SDR+ ESSK T++SHK   +PN I I GEN GAVMEI E  K E  
Sbjct: 121 PGIFHKSTVEKVTKSDRYHESSK-TLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGG 180

Query: 181 DMIEK-KERFRRTLSSK--ANDQNKEGSKDHRGE---STYLNSNVQGVNNSILYGASLAH 226
            MI+K KE  R  L++   ANDQN E SK        +T+LNSN Q VNNS+LY A+L H
Sbjct: 181 HMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTH 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g00600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3R5_CUCSA	1.3e-34	48.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g00600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g00600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074886\|ref\|XP_008437848.1\|	1.8e-34	46.89	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo]	[more]
gi\|449432014\|ref\|XP_004133795.1\|	1.8e-34	48.56	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00600.1	Cp4.1LG08g00600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 149..225 score: 8.2
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 149..225 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g00600	Lsi05G021580	Bottle gourd (USVL1VR-Ls)	cpelsiB714
Cp4.1LG08g00600	Bhi01G000388	Wax gourd	cpewgoB1105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g00600	Wax gourd	cpewgoB1098
Cp4.1LG08g00600	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG08g00600	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g00600	Cucurbita maxima (Rimu)	cmacpeB014
Cp4.1LG08g00600	Cucurbita maxima (Rimu)	cmacpeB015
Cp4.1LG08g00600	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g00600	Cucurbita maxima (Rimu)	cmacpeB848
Cp4.1LG08g00600	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g00600	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g00600	Wild cucumber (PI 183967)	cpecpiB864
Cp4.1LG08g00600	Cucumber (Chinese Long) v2	cpecuB862
Cp4.1LG08g00600	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g00600	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g00600	Melon (DHL92) v3.5.1	cpemeB815
Cp4.1LG08g00600	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g00600	Melon (DHL92) v3.6.1	cpemedB929
Cp4.1LG08g00600	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g00600	Silver-seed gourd	carcpeB0180
Cp4.1LG08g00600	Silver-seed gourd	carcpeB1380
Cp4.1LG08g00600	Cucumber (Chinese Long) v3	cpecucB1058
Cp4.1LG08g00600	Cucumber (Chinese Long) v3	cpecucB1071