Cp4.1LG07g10050 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g10050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG07 : 9163218 .. 9163642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACACACCGTCTTCTCAATTAACAATCTCACAGAAGCACAAGCTTTCAAAGCTAAGAGTCATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGGTAAGTGTTTTTATCTTGCCATCTTTTAAATTCTATATTATTTTTTTGTTTTCTTTTGCTAAAATAATATTTAATCCTTCGATTGCTTGCAGCCAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTTGACGACGATTCGTGTTATGATGATTGCGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTACGAATGAAAAGGATTGTTGTTGTAATAATTGAGAGGACGGAATCGTTTGATTTTATTTAATTTTGTGGGCAAATTG

mRNA sequence

ACACACACCGTCTTCTCAATTAACAATCTCACAGAAGCACAAGCTTTCAAAGCTAAGAGTCATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGCCAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTTGACGACGATTCGTGTTATGATGATTGCGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTACGAATGAAAAGGATTGTTGTTGTAATAATTGAGAGGACGGAATCGTTTGATTTTATTTAATTTTGTGGGCAAATTG

Coding sequence (CDS)

ATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGCCAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTTGACGACGATTCGTGTTATGATGATTGCGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTACGAATGAAAAGGATTGTTGTTGTAATAATTGA

Protein sequence

MASRKLFTVFAIVMMMFYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCNN

Homology

[Close]

BLAST of Cp4.1LG07g10050 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.5e-17
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+M+F   AS+ KGD+  + C+RPC D +DD+SCY+DC++ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCN 75
          YPKLPS   +KDCCCN
Sbjct: 61 YPKLPS--TDKDCCCN 74

[Close]

BLAST of Cp4.1LG07g10050 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+++F    S+ KGD+  + C+RPC D +DD+SCY+DC+R N GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCNN 76
          YPKLPS   +KDCCCN+
Sbjct: 61 YPKLPS--TDKDCCCND 75

[Close]

BLAST of Cp4.1LG07g10050 vs. TrEMBL
Match: A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-14
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 22 SAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCN 75
          +AKGD+  + C+RPC D +DD+SCY+DC+R N GAGFCYPKLPS   +KDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPS--TDKDCCCN 53

[Close]

BLAST of Cp4.1LG07g10050 vs. TrEMBL
Match: A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-09
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPSVTNEKDCCCNN 76
          PKLP +++ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

[Close]

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+M+F   AS+ KGD+  + C+RPC D +DD+SCY+DC++ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCN 75
          YPKLPS   +KDCCCN
Sbjct: 61 YPKLPS--TDKDCCCN 74

[Close]

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+++F    S+ KGD+  + C+RPC D +DD+SCY+DC+R N GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCNN 76
          YPKLPS   +KDCCCN+
Sbjct: 61 YPKLPS--TDKDCCCND 75

[Close]

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: gi|700206108|gb|KGN61227.1| (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-14
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 22 SAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCN 75
          +AKGD+  + C+RPC D +DD+SCY+DC+R N GAGFCYPKLPS   +KDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPS--TDKDCCCN 53

[Close]

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: gi|700199339|gb|KGN54497.1| (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPSVTNEKDCCCNN 76
          PKLP +++ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g10050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g10050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHG9_CUCSA	8.5e-17	56.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1	[more]
A0A0A0LJG5_CUCSA	1.9e-16	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1	[more]
A0A0A0LKF5_CUCSA	3.0e-14	64.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1	[more]
A0A0A0L1R8_CUCSA	1.7e-09	44.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g10050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g10050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206109\|gb\|KGN61228.1\|	1.2e-16	56.58	hypothetical protein Csa_2G071930 [Cucumis sativus]	[more]
gi\|700206110\|gb\|KGN61229.1\|	2.7e-16	54.55	hypothetical protein Csa_2G072430 [Cucumis sativus]	[more]
gi\|700206108\|gb\|KGN61227.1\|	4.3e-14	64.81	hypothetical protein Csa_2G070930 [Cucumis sativus]	[more]
gi\|700199339\|gb\|KGN54497.1\|	2.5e-09	44.74	hypothetical protein Csa_4G339000 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g10050.1	Cp4.1LG07g10050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g10050	CmaCh12G012470	Cucurbita maxima (Rimu)	cmacpeB204
Cp4.1LG07g10050	CmoCh12G012780	Cucurbita moschata (Rifu)	cmocpeB176

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g10050	Cucurbita pepo (Zucchini)	cpecpeB140
Cp4.1LG07g10050	Cucurbita pepo (Zucchini)	cpecpeB373
Cp4.1LG07g10050	Cucurbita pepo (Zucchini)	cpecpeB502
Cp4.1LG07g10050	Cucumber (Gy14) v1	cgycpeB0279
Cp4.1LG07g10050	Cucurbita maxima (Rimu)	cmacpeB101
Cp4.1LG07g10050	Cucurbita maxima (Rimu)	cmacpeB161
Cp4.1LG07g10050	Cucurbita maxima (Rimu)	cmacpeB792
Cp4.1LG07g10050	Cucurbita moschata (Rifu)	cmocpeB076
Cp4.1LG07g10050	Cucurbita moschata (Rifu)	cmocpeB137
Cp4.1LG07g10050	Cucurbita moschata (Rifu)	cmocpeB745
Cp4.1LG07g10050	Wild cucumber (PI 183967)	cpecpiB822
Cp4.1LG07g10050	Cucumber (Chinese Long) v2	cpecuB821
Cp4.1LG07g10050	Bottle gourd (USVL1VR-Ls)	cpelsiB660
Cp4.1LG07g10050	Bottle gourd (USVL1VR-Ls)	cpelsiB684
Cp4.1LG07g10050	Watermelon (Charleston Gray)	cpewcgB724
Cp4.1LG07g10050	Watermelon (97103) v1	cpewmB810
Cp4.1LG07g10050	Melon (DHL92) v3.5.1	cpemeB751
Cp4.1LG07g10050	Melon (DHL92) v3.5.1	cpemeB772
Cp4.1LG07g10050	Cucumber (Gy14) v2	cgybcpeB272
Cp4.1LG07g10050	Melon (DHL92) v3.6.1	cpemedB886
Cp4.1LG07g10050	Melon (DHL92) v3.6.1	cpemedB908
Cp4.1LG07g10050	Silver-seed gourd	carcpeB0055
Cp4.1LG07g10050	Silver-seed gourd	carcpeB0190
Cp4.1LG07g10050	Silver-seed gourd	carcpeB0391
Cp4.1LG07g10050	Silver-seed gourd	carcpeB0817
Cp4.1LG07g10050	Cucumber (Chinese Long) v3	cpecucB1015
Cp4.1LG07g10050	Wax gourd	cpewgoB1019
Cp4.1LG07g10050	Wax gourd	cpewgoB1026
Cp4.1LG07g10050	Wax gourd	cpewgoB1068