Cp4.1LG07g06840 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g06840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTIR-NBS-LRR disease resistance protein
LocationCp4.1LG07 : 5631254 .. 5633070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTGATGTTTGTGTCATGATTTGCTACCCTGTATGCATGAGCTTGATTGACATGTCACGATTGTAATGAGAACTTCGCATGCCATGAATGTGATGACTAGTATGCTACGATATGCTTAATCGATGTTTAACCCAGTTATGCTATGTAATGCTGTGAGGGGATGAAACGTTGTATGTATAATACTATGGAGGTAAATCTTAAGGACCTCATGCACGCTATGTGTTATGTACATGGGGTACTTCCCCGTTATGCTAATGATGGTACAGACGCATACATTCGATATTATGTTCGCTATGATATCATGCAGGCCCTTCTTTTTTCGTGGCGTCCGGTATTGTATGTCATACGTACCCGACCAAGGTAGGCCCAGGGAGCTCGCCTGGTGGGCCCACAGTCACGCACATAGGCCATGCGTGGGAAAGTACCATGCATCCACCCTACCTGGACAAAGCAAGGGCCTAAGGATATGGGAAGGAATGGAAGACAGGCCCCCTCTCGTTTTCTTTCTTTTGACACTTGTGCTTATGTATGTGTATTGTATGTGATCGCATGTATCCTAATGTATGTTGTATGCTTAACCCCAACAGCGGGGCGACTTACTGGGTATTTTATATAATACTCAAGCCACGTGCTACCTATATTTTCAGGTAAGGGCAAGGCCCCCATGTACGGCTGATGGTGAATGCTGCGAAGGCCATGGAAGTCTTAGGAAAGGCTTGTAGTGTCGTAGGCGTCTTGTTTAGACTCCCTCGGATGATAGTTATTGCAATTATTTCTTCTAGTTATCTATTGAATATTTCTTAGTTAGGTTGTCGTTATTGTTTTTTCCCAGGTATGAACTACTTATAATAATGAACGTATTGTCGTTATTGAGGTTGTCTTACATATATTTTCGTACTTTCGTTATACGAGTATAAGGTAACGTCGCTAATTAGGTTAGAGAAAATTAGGGGCGTTACACAGTGTGTCTCAAGATGCAATTTAGCTTGTCATTTTTAACTTTAATATGATTATGTGGTTAACGACAGGTGTAACAGGAATGAAGCTGATTTTATTCCCGACATTGTTAAAGAAGGGTTGTGTATTAAAACATACTTACACACCCTTATATCTAGAAAGTACAAAGTTACACTCCCGGCTACAACCAAAATGCTCTGATACCAATTGTTGTACCCTAACTCTACAATGAAAATGTTTTGATACTAATTGTTGTACCCCAATGGCACAACCAAAATGCTGATATCGATTGTTGTACTCTAATGCCACAACCAAAATGCTCTGATACAAATGAATGTAGCGGAAGCCAAAGCAACATCGATCGTACTCACATACCCCTAAACAATTTATTTGTTATCAAATCTTCGTTAACAGGTGGGTGTTCTAGATTTGAAATGCTTCCCCCATAAATTGGGCTCAACCGTCCATCCAATACTTCAAATCATGGAAACTTCGTCTATGGAAACTTCGTCGAGTTCAGAATTTCTCCATTTATCTGTTTCAAAAGAGAGCTTATGTTTTCTCATCTCACTTTGTTGATCTTGAAAATTGCAACATATCAAATGCAAAATTTTTGGAAATTTTGTGTGATGTCACCCATTCTTATCTAGTCTATTCTTGTCATAAAACATTTTCTCTCGTCTACCCTCATGTCTCCATAAGTTTACGACCTTGCAGCATCTCCAATTGAGTAATTGCAAGTTTCTTCAAGAAATTCCAAACTACCCTTTGTGTAGACAAAAAATGGATGCCATTCGCTGTGAATGGTGGGTTAAAAGTCCCGACAACATTGTGGATATAATATCAATCAACTAG

mRNA sequence

ATGTATGTAAATCTTAAGGACCTCATGCACGCTATGTGTTATGTACATGGGGTACTTCCCCGTTATGCTAATGATGGTACAGACGCATACATTCGATATTATGTTCGCTATGATATCATGCAGGCCCTTCTTTTTTCGTGGCGTCCGAATTTCTCCATTTATCTGTTTCAAAAGAGAGCTTATGTTTTCTCATCTCACTTTGTTGATCTTGAAAATTGCAACATATCAAATGCAAAATTTTTGGAAATTTTGTGTGATGTCACCCATTCTTATCTAGTCTATTCTTGTCATAAAACATTTTCTCTCGTCTACCCTCATCATCTCCAATTGAGTAATTGCAAGTTTCTTCAAGAAATTCCAAACTACCCTTTGTGTAGACAAAAAATGGATGCCATTCGCTGTGAATGGTGGGTTAAAAGTCCCGACAACATTGTGGATATAATATCAATCAACTAG

Coding sequence (CDS)

ATGTATGTAAATCTTAAGGACCTCATGCACGCTATGTGTTATGTACATGGGGTACTTCCCCGTTATGCTAATGATGGTACAGACGCATACATTCGATATTATGTTCGCTATGATATCATGCAGGCCCTTCTTTTTTCGTGGCGTCCGAATTTCTCCATTTATCTGTTTCAAAAGAGAGCTTATGTTTTCTCATCTCACTTTGTTGATCTTGAAAATTGCAACATATCAAATGCAAAATTTTTGGAAATTTTGTGTGATGTCACCCATTCTTATCTAGTCTATTCTTGTCATAAAACATTTTCTCTCGTCTACCCTCATCATCTCCAATTGAGTAATTGCAAGTTTCTTCAAGAAATTCCAAACTACCCTTTGTGTAGACAAAAAATGGATGCCATTCGCTGTGAATGGTGGGTTAAAAGTCCCGACAACATTGTGGATATAATATCAATCAACTAG

Protein sequence

MYVNLKDLMHAMCYVHGVLPRYANDGTDAYIRYYVRYDIMQALLFSWRPNFSIYLFQKRAYVFSSHFVDLENCNISNAKFLEILCDVTHSYLVYSCHKTFSLVYPHHLQLSNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIISIN
Homology
[Close]
BLAST of Cp4.1LG07g06840 vs. TrEMBL
Match: A6YTE0_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 57/116 (49.14%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 46  SWRPNFSIYLFQKRAYVFSSHFVDLENCNISNAKFLEILCDVT------------HSYLV 105
           SW   F   L    +       +DL++CNISNAKFLEILCDV              S L 
Sbjct: 829 SWSLEFPHLLVPNESLFSHFTLLDLKSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLP 888

Query: 106 YSCHKTFSLVYPHHLQLSNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
              HK  SL    +L+L NCKFLQEIPN P   QKMDA  CE  V+SP+NIVDIIS
Sbjct: 889 SCLHKFMSL---WNLELKNCKFLQEIPNLPKNIQKMDASGCESLVRSPNNIVDIIS 941

[Close]
BLAST of Cp4.1LG07g06840 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 65   SHF--VDLENCNISNAKFLEILCDVT------------HSYLVYSCHKTFSLVYPHHLQL 124
            SHF  +DL++CNISNAKFLEILCDV              S L    HK  SL    +L+L
Sbjct: 974  SHFTLLDLQSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSL---WNLEL 1033

Query: 125  SNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIISI 151
             NCKFLQEIPN P   Q +DA  C+   +SPDNI+DIISI
Sbjct: 1034 KNCKFLQEIPNLPQNIQNLDASGCKSLARSPDNIMDIISI 1070

[Close]
BLAST of Cp4.1LG07g06840 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 64/161 (39.75%), Postives = 85/161 (52.80%), Query Frame = 1 

Query: 4   NLKDLMHAMCYVHGVLPRYANDGTDAYIRYYVRYDIMQALLFSWR-PNFSIYLFQKRAYV 63
           +LK+L+ + C + G+ P   N              +M+  L+S + P+F   L    ++ 
Sbjct: 813 SLKNLLLSGCSIFGMFPDKWNPTIQPVCS---PSKMMETALWSLKVPHF---LVPNESF- 872

Query: 64  FSSHF--VDLENCNISNAKFLEILCDVT------------HSYLVYSCHKTFSLVYPHHL 123
             SH   +DL++CNISNA FL+ILCDV              S L    HK  SL    +L
Sbjct: 873 --SHITLLDLQSCNISNANFLDILCDVAPFLSDLRLSENKFSSLPSCLHKFMSL---SNL 932

Query: 124 QLSNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
           +L NCKFLQEIP+ P   QKMDA  CE   + PDNIVDIIS
Sbjct: 933 ELRNCKFLQEIPSLPESIQKMDACGCESLARIPDNIVDIIS 961

[Close]
BLAST of Cp4.1LG07g06840 vs. TrEMBL
Match: A0A0A0LLL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 65   SHF--VDLENCNISNAKFLEILCDVT------------HSYLVYSCHKTFSLVYPHHLQL 124
            SHF  +DL++CNIS+AKFLEILCDV              S L    HK  SL    +L+L
Sbjct: 906  SHFTLLDLKSCNISSAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSL---SNLEL 965

Query: 125  SNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIISI 151
             NCKFLQEIPN P   + +DA  C+   +SPDNIVDIISI
Sbjct: 966  RNCKFLQEIPNLPQNIRNLDASGCKSLARSPDNIVDIISI 1002

[Close]
BLAST of Cp4.1LG07g06840 vs. TrEMBL
Match: Q84KB4_CUCME (MRGH5 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 66   HF--VDLENCNISNAKFLEILCDVTHSYL-----------VYSC-HKTFSLVYPHHLQLS 125
            HF  +DLE CNISN  FLEILC+V  S             + SC HK  SL    +L+L 
Sbjct: 966  HFTLLDLEGCNISNVDFLEILCNVASSLSSILLSENNFSSLPSCLHKFMSL---RNLELR 1025

Query: 126  NCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
            NCKFLQEIPN PLC Q++DA  C    +SP+NI+DIIS
Sbjct: 1026 NCKFLQEIPNLPLCIQRVDATGCVSLSRSPNNILDIIS 1060

[Close]
BLAST of Cp4.1LG07g06840 vs. NCBI nr
Match: gi|659070449|ref|XP_008455151.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 66/158 (41.77%), Postives = 82/158 (51.90%), Query Frame = 1 

Query: 4    NLKDLMHAMCYVHGVLPRYANDGTDAYIRYYVRYDIMQALLFSWRPNFSIYLFQKRAYVF 63
            NL++L+ + C + G+ P +  D T   I+       M     SW   F   L    +   
Sbjct: 874  NLENLLLSGCSIFGMFP-HTWDPTIPTIQQVCSPSKMMETA-SWSLEFPHLLVPNESLCA 933

Query: 64   SSHFVDLENCNISNAKFLEILCDVT------------HSYLVYSCHKTFSLVYPHHLQLS 123
                +DLE+CNISNAKFLE+LCDV              S L    HK  SL    +L+L 
Sbjct: 934  HFTLLDLESCNISNAKFLELLCDVAPFLSDLRLSENKFSSLPSCLHKFMSL---WNLELR 993

Query: 124  NCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
            NCKFLQEIPN P   QKMDA  CE   ++PDNIVDIIS
Sbjct: 994  NCKFLQEIPNLPENIQKMDASGCESLARNPDNIVDIIS 1026

[Close]
BLAST of Cp4.1LG07g06840 vs. NCBI nr
Match: gi|659070451|ref|XP_008455159.1| (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 66/158 (41.77%), Postives = 82/158 (51.90%), Query Frame = 1 

Query: 4   NLKDLMHAMCYVHGVLPRYANDGTDAYIRYYVRYDIMQALLFSWRPNFSIYLFQKRAYVF 63
           NL++L+ + C + G+ P +  D T   I+       M     SW   F   L    +   
Sbjct: 687 NLENLLLSGCSIFGMFP-HTWDPTIPTIQQVCSPSKMMETA-SWSLEFPHLLVPNESLCA 746

Query: 64  SSHFVDLENCNISNAKFLEILCDVT------------HSYLVYSCHKTFSLVYPHHLQLS 123
               +DLE+CNISNAKFLE+LCDV              S L    HK  SL    +L+L 
Sbjct: 747 HFTLLDLESCNISNAKFLELLCDVAPFLSDLRLSENKFSSLPSCLHKFMSL---WNLELR 806

Query: 124 NCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
           NCKFLQEIPN P   QKMDA  CE   ++PDNIVDIIS
Sbjct: 807 NCKFLQEIPNLPENIQKMDASGCESLARNPDNIVDIIS 839

[Close]
BLAST of Cp4.1LG07g06840 vs. NCBI nr
Match: gi|311992493|gb|ABR67409.2| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 57/116 (49.14%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 46  SWRPNFSIYLFQKRAYVFSSHFVDLENCNISNAKFLEILCDVT------------HSYLV 105
           SW   F   L    +       +DL++CNISNAKFLEILCDV              S L 
Sbjct: 829 SWSLEFPHLLVPNESLFSHFTLLDLKSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLP 888

Query: 106 YSCHKTFSLVYPHHLQLSNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
              HK  SL    +L+L NCKFLQEIPN P   QKMDA  CE  V+SP+NIVDIIS
Sbjct: 889 SCLHKFMSL---WNLELKNCKFLQEIPNLPKNIQKMDASGCESLVRSPNNIVDIIS 941

[Close]
BLAST of Cp4.1LG07g06840 vs. NCBI nr
Match: gi|659071574|ref|XP_008460703.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 57/116 (49.14%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 46   SWRPNFSIYLFQKRAYVFSSHFVDLENCNISNAKFLEILCDVT------------HSYLV 105
            SW   F   L    +       +DL++CNISNAKFLEILCDV              S L 
Sbjct: 888  SWSLEFPHLLVPNESLFSHFTLLDLKSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLP 947

Query: 106  YSCHKTFSLVYPHHLQLSNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIIS 150
               HK  SL    +L+L NCKFLQEIPN P   QKMDA  CE  V+SP+NIVDIIS
Sbjct: 948  SCLHKFMSL---WNLELKNCKFLQEIPNLPKNIQKMDASGCESLVRSPNNIVDIIS 1000

[Close]
BLAST of Cp4.1LG07g06840 vs. NCBI nr
Match: gi|307135796|gb|ADN33675.1| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 65   SHF--VDLENCNISNAKFLEILCDVT------------HSYLVYSCHKTFSLVYPHHLQL 124
            SHF  +DL++CNISNAKFLEILCDV              S L    HK  SL    +L+L
Sbjct: 974  SHFTLLDLQSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSL---WNLEL 1033

Query: 125  SNCKFLQEIPNYPLCRQKMDAIRCEWWVKSPDNIVDIISI 151
             NCKFLQEIPN P   Q +DA  C+   +SPDNI+DIISI
Sbjct: 1034 KNCKFLQEIPNLPQNIQNLDASGCKSLARSPDNIMDIISI 1070

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g06840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g06840 vs. TrEMBL
Match NameE-valueIdentityDescription
A6YTE0_CUCME1.4e-1549.14TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=2[more]
E5GB33_CUCME2.1e-1453.00TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LJM0_CUCSA1.0e-1339.75Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1[more]
A0A0A0LLL0_CUCSA1.3e-1352.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1[more]
Q84KB4_CUCME1.8e-1352.04MRGH5 OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cp4.1LG07g06840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g06840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070449|ref|XP_008455151.1|1.9e-1641.77PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo][more]
gi|659070451|ref|XP_008455159.1|1.9e-1641.77PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo][more]
gi|311992493|gb|ABR67409.2|2.1e-1549.14TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo][more]
gi|659071574|ref|XP_008460703.1|2.1e-1549.14PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
gi|307135796|gb|ADN33675.1|3.0e-1453.00TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g06840.1Cp4.1LG07g06840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g06840Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g06840Cucurbita moschata (Rifu)cmocpeB175