Cp4.1LG07g06830 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG07g06830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 5518397 .. 5518714 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGAATATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGTAGTAATTTAACATTACAATAA

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGAATATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGTAGTAATTTAACATTACAATAA

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGAATATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGTAGTAATTTAACATTACAATAA

Protein sequence

MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGSNLTLQ
BLAST of Cp4.1LG07g06830 vs. TrEMBL
Match: A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 100
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R G
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKG 108

BLAST of Cp4.1LG07g06830 vs. NCBI nr
Match: gi|700209774|gb|KGN64870.1| (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 100
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R G
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKG 108

BLAST of Cp4.1LG07g06830 vs. NCBI nr
Match: gi|659071869|ref|XP_008462313.1| (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 1

Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP TAET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  ED---------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 100
           E+         P T PV  + ++ R  DSTS++TED  VT +ME + + G
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKG 110

BLAST of Cp4.1LG07g06830 vs. NCBI nr
Match: gi|778664983|ref|XP_011648456.1| (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 1

Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESK 96
           E+       P + PV  D +L R  DSTS++TED   T K E K
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTED---TAKREIK 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LSH9_CUCSA1.2e-2162.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700209774|gb|KGN64870.1|1.8e-2162.04hypothetical protein Csa_1G136770 [Cucumis sativus][more]
gi|659071869|ref|XP_008462313.1|1.9e-2059.09PREDICTED: histone H2B type 1-A-like [Cucumis melo][more]
gi|778664983|ref|XP_011648456.1|1.4e-1861.54PREDICTED: histone H2B [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005694 chromosome
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g06830.1Cp4.1LG07g06830.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None