Cp4.1LG07g06230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g06230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionFar upstream element-binding protein 2
LocationCp4.1LG07 : 3667796 .. 3668233 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGCTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTCTCCCGCCGCCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATTCGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGCGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGGTGACTATAATCTTGCTGTCTCTTTCTTGCATCTTTCATGTTTCTGTATGCATGTCGACCATGTATTGCCTTATTTTTAA

mRNA sequence

ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGCTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTCTCCCGCCGCCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATTCGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGCGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGGTGACTATAATCTTGCTGTCTCTTTCTTGCATCTTTCATGTTTCTGTATGCATGTCGACCATGTATTGCCTTATTTTTAA

Coding sequence (CDS)

ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGCTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTCTCCCGCCGCCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATTCGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGCGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGGTGACTATAATCTTGCTGTCTCTTTCTTGCATCTTTCATGTTTCTGTATGCATGTCGACCATGTATTGCCTTATTTTTAA

Protein sequence

MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSGDYNLAVSFLHLSCFCMHVDHVLPYF
Homology
[Close]
BLAST of Cp4.1LG07g06230 vs. TrEMBL
Match: A0A0A0LKT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351790 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPP 60
           MADEAQYSS TD  SNKRKYDD PPP   RRPTGFSGPITSPSSDSA    PSYNNVPPP
Sbjct: 1   MADEAQYSSATDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSG 119
           MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGAD KRPRVENGGG+DSY+KGFSSG
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSG 111

[Close]
BLAST of Cp4.1LG07g06230 vs. TrEMBL
Match: W9R3G4_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis GN=L484_019523 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 83/121 (68.60%), Postives = 90/121 (74.38%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPP 60
           MADE QYSSGTD  SNKRKY++   P  SRRPTGFS PI+S S DSA   PPSYN+VPPP
Sbjct: 1   MADEPQYSSGTDTGSNKRKYEEQTTPP-SRRPTGFSAPISSTSPDSA---PPSYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSG 120
           +DEIQLAKQRAQEIA+RL        AGAG     DAKRPRVENGGGFDS +KGFSS   
Sbjct: 61  VDEIQLAKQRAQEIAARLF---NNASAGAGVAPPLDAKRPRVENGGGFDSSDKGFSSAPT 114

Query: 121 D 122
           D
Sbjct: 121 D 114

[Close]
BLAST of Cp4.1LG07g06230 vs. TrEMBL
Match: M5XJW9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002323mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 81/124 (65.32%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDH--PPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVP 60
           MADEAQYSSG D+ +NKRKY++   PPP   RR TGFS PITS S DSA   PPSY+NVP
Sbjct: 1   MADEAQYSSGPDSGNNKRKYEEQTTPPP---RRATGFSAPITSSSPDSA---PPSYSNVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLI-ISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSS 120
           PP+D+IQ+AKQRAQEIA+RL   +SGGV AG     G +AKRPRVEN  GFDS +KGFSS
Sbjct: 61  PPVDDIQVAKQRAQEIAARLFNNASGGVAAG-----GLEAKRPRVEN--GFDSIDKGFSS 111

Query: 121 GSGD 122
              D
Sbjct: 121 APPD 111

[Close]
BLAST of Cp4.1LG07g06230 vs. TrEMBL
Match: F6H392_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00820 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-25
Identity = 76/126 (60.32%), Postives = 90/126 (71.43%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMV--SRRPTGFSGPITSPSSDSANPPPPSYNNVP 60
           MA+E QYSSGTDA +NKRKY+D   P    +RRPTGFS PI++PS DS++ PP SYN+VP
Sbjct: 1   MAEEVQYSSGTDA-TNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSHAPP-SYNSVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENG---GGFDSYEKGF 120
           PP DEIQLAKQRAQEIA+RL  ++             +AKRPRVENG   GGFDS +KGF
Sbjct: 61  PPADEIQLAKQRAQEIAARLFSNASN----------TEAKRPRVENGAGAGGFDSGDKGF 114

Query: 121 SSGSGD 122
           SS   D
Sbjct: 121 SSAPSD 114

[Close]
BLAST of Cp4.1LG07g06230 vs. TrEMBL
Match: A0A061GL28_THECC (KH domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_037268 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-24
Identity = 76/124 (61.29%), Postives = 86/124 (69.35%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVS-RRPTGFSGPITSPSSDSANPPPPSYNNVPP 60
           M DEAQYSSG DA SNKRKYDD  PP    RRPTGFS P      DSA   PPSYN+VPP
Sbjct: 1   MTDEAQYSSGPDAGSNKRKYDDQTPPSSGGRRPTGFSSP------DSA---PPSYNSVPP 60

Query: 61  PMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVEN--GGGFDSYEKGFSS 120
           P+D I++AKQRAQEIA+RL +S+           GA+AKRPRVEN  GGGFD+ +KGFSS
Sbjct: 61  PLDGIEMAKQRAQEIAARLTLSAA--------SAGAEAKRPRVENGSGGGFDN-DKGFSS 106

Query: 121 GSGD 122
              D
Sbjct: 121 APPD 106

[Close]
BLAST of Cp4.1LG07g06230 vs. TAIR10
Match: AT2G25970.1 (AT2G25970.1 KH domain-containing protein)

HSP 1 Score: 107.1 bits (266), Expect = 9.4e-24
Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHP-PPMVSRRPTGFS-GPITSPSSDSANP---PPPSYN 60
           MADE+QYSS  D  SNKRKY++   PP  +RRPTGFS GPI S S D   P   PP SYN
Sbjct: 1   MADESQYSS--DTYSNKRKYEEPTAPPPSTRRPTGFSSGPIPSASVDPTAPTGLPPSSYN 60

Query: 61  NVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFD-SYEKG 118
           +VPPPMDEIQ+AKQ+AQEIA+RL+ S             ADAKRPRV+NG  +D    KG
Sbjct: 61  SVPPPMDEIQIAKQKAQEIAARLLNS-------------ADAKRPRVDNGASYDYGDNKG 108

[Close]
BLAST of Cp4.1LG07g06230 vs. NCBI nr
Match: gi|449450341|ref|XP_004142921.1| (PREDICTED: far upstream element-binding protein 1 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.8e-46
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPP 60
           MADEAQYSS TD  SNKRKYDD PPP   RRPTGFSGPITSPSSDSA    PSYNNVPPP
Sbjct: 1   MADEAQYSSATDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSG 119
           MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGAD KRPRVENGGG+DSY+KGFSSG
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSG 111

[Close]
BLAST of Cp4.1LG07g06230 vs. NCBI nr
Match: gi|659087503|ref|XP_008444487.1| (PREDICTED: far upstream element-binding protein 1 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 103/118 (87.29%), Postives = 105/118 (88.98%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPP 60
           MADEAQYSS  D  SNKRKYDD PPP   RRPTGFSGPITSPSSDSA    PSYNNVPPP
Sbjct: 1   MADEAQYSSANDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSG 119
           MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGAD KRPRVENGGG+DSY+KGFSSG
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSG 111

[Close]
BLAST of Cp4.1LG07g06230 vs. NCBI nr
Match: gi|703101047|ref|XP_010097084.1| (Far upstream element-binding protein 2 [Morus notabilis])

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 83/121 (68.60%), Postives = 90/121 (74.38%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPP 60
           MADE QYSSGTD  SNKRKY++   P  SRRPTGFS PI+S S DSA   PPSYN+VPPP
Sbjct: 1   MADEPQYSSGTDTGSNKRKYEEQTTPP-SRRPTGFSAPISSTSPDSA---PPSYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSG 120
           +DEIQLAKQRAQEIA+RL        AGAG     DAKRPRVENGGGFDS +KGFSS   
Sbjct: 61  VDEIQLAKQRAQEIAARLF---NNASAGAGVAPPLDAKRPRVENGGGFDSSDKGFSSAPT 114

Query: 121 D 122
           D
Sbjct: 121 D 114

[Close]
BLAST of Cp4.1LG07g06230 vs. NCBI nr
Match: gi|1009134483|ref|XP_015884471.1| (PREDICTED: basic salivary proline-rich protein 2 [Ziziphus jujuba])

HSP 1 Score: 139.8 bits (351), Expect = 3.7e-30
Identity = 84/122 (68.85%), Postives = 93/122 (76.23%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVPPP 60
           MADEAQYSSGTD+ASNKRKY++   P   RR TGFS PI+S S DSA   P SYN+VPPP
Sbjct: 1   MADEAQYSSGTDSASNKRKYEEQTTPPPPRRATGFSAPISS-SPDSA---PASYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLI-ISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGS 120
           +DEIQLAKQRAQEIA+RL   +S G GAGAG     DAKRPRVENG GFDS +KGFSS  
Sbjct: 61  VDEIQLAKQRAQEIAARLFNNASVGAGAGAGAAGALDAKRPRVENGSGFDSNDKGFSSVP 118

Query: 121 GD 122
            D
Sbjct: 121 SD 118

[Close]
BLAST of Cp4.1LG07g06230 vs. NCBI nr
Match: gi|645227301|ref|XP_008220450.1| (PREDICTED: far upstream element-binding protein 2 [Prunus mume])

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-27
Identity = 81/124 (65.32%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 1   MADEAQYSSGTDAASNKRKYDDH--PPPMVSRRPTGFSGPITSPSSDSANPPPPSYNNVP 60
           MADEAQYSSG D+ +NKRKY++   PPP   RR TGFS PITS S DSA   PPSY+NVP
Sbjct: 1   MADEAQYSSGPDSGNNKRKYEEQTTPPP---RRATGFSAPITSSSPDSA---PPSYSNVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLI-ISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSS 120
           PP+D+IQ+AKQRAQEIA+RL   +SGGV AG     G +AKRPRVEN  GFDS +KGFSS
Sbjct: 61  PPVDDIQVAKQRAQEIAARLFNNASGGVAAG-----GLEAKRPRVEN--GFDSIDKGFSS 111

Query: 121 GSGD 122
              D
Sbjct: 121 APPD 111

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g06230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g06230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKT6_CUCSA2.0e-4688.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351790 PE=4 SV=1[more]
W9R3G4_9ROSA2.0e-3068.60Far upstream element-binding protein 2 OS=Morus notabilis GN=L484_019523 PE=4 SV... [more]
M5XJW9_PRUPE4.6e-2765.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002323mg PE=4 SV=1[more]
F6H392_VITVI1.9e-2560.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00820 PE=4 SV=... [more]
A0A061GL28_THECC2.1e-2461.29KH domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_037268 PE=4 SV=... [more]
BLAST of Cp4.1LG07g06230 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25970.19.4e-2458.54 KH domain-containing protein[more]
BLAST of Cp4.1LG07g06230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450341|ref|XP_004142921.1|2.8e-4688.14PREDICTED: far upstream element-binding protein 1 [Cucumis sativus][more]
gi|659087503|ref|XP_008444487.1|1.1e-4587.29PREDICTED: far upstream element-binding protein 1 [Cucumis melo][more]
gi|703101047|ref|XP_010097084.1|2.9e-3068.60Far upstream element-binding protein 2 [Morus notabilis][more]
gi|1009134483|ref|XP_015884471.1|3.7e-3068.85PREDICTED: basic salivary proline-rich protein 2 [Ziziphus jujuba][more]
gi|645227301|ref|XP_008220450.1|6.6e-2765.32PREDICTED: far upstream element-binding protein 2 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g06230.1Cp4.1LG07g06230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 51..109
score: 4.3
NoneNo IPR availablePANTHERPTHR10288:SF171F17H15.1/F17H15.1-RELATEDcoord: 51..109
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g06230Silver-seed gourdcarcpeB0268
Cp4.1LG07g06230Silver-seed gourdcarcpeB0976
Cp4.1LG07g06230Cucumber (Chinese Long) v3cpecucB1013
Cp4.1LG07g06230Wax gourdcpewgoB1028
Cp4.1LG07g06230Wax gourdcpewgoB1040
Cp4.1LG07g06230Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG07g06230Cucumber (Gy14) v1cgycpeB1046
Cp4.1LG07g06230Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g06230Cucurbita maxima (Rimu)cmacpeB797
Cp4.1LG07g06230Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g06230Cucurbita moschata (Rifu)cmocpeB750
Cp4.1LG07g06230Wild cucumber (PI 183967)cpecpiB820
Cp4.1LG07g06230Cucumber (Chinese Long) v2cpecuB819
Cp4.1LG07g06230Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g06230Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g06230Watermelon (97103) v1cpewmB782
Cp4.1LG07g06230Melon (DHL92) v3.5.1cpemeB754
Cp4.1LG07g06230Cucumber (Gy14) v2cgybcpeB270
Cp4.1LG07g06230Melon (DHL92) v3.6.1cpemedB890