Cp4.1LG07g05640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g05640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 4207163 .. 4208527 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGTAAATTCTTACAAATGCTCAAAACTTTATGTTACAGGTGGGACGTATTATAAATTATATCAAAATTCTTACAAATGCCCAAAAGTCGATGTCTTCCCCTTCCTCGACTTTCCTTAGATTTTTTAATTGACATTTGGAGCGAAAACAAATTATTCAGGGTGGTATTAAGAACCCAACACCTTGTACAGTTAATATGCTTAGTTATCTATTAGAACTTCGGTAGTTCAAGATGACTCTACCGGTTGAGCCAGGGTTCTCAATTCCTATATTTGATACGGTGAGTATATCCGTGCTAGTGGGATGTAAGGATTCCAATAAAGTTACTCAAATAGTCAATAAATATATTTTCGATTATGTCGACAAACGTCAAAGCATTTTATTGTGACTACCAATAGAAAGAAAGAGAAAGACTGTAATAGCCAAAAATAAATAAACAAATAAACAAATAAAAATAATTATAAAAAAATAGTTAAAATAATATAATAATAAATAAATACATAAATAACTTTTTCTCTCTTCTCTCCACTAACATCTCATCCCTTCCCACAATTATCTCTCATCAACCCCTATAAAGTGACGGCAAAAAGAAATAGAAAAACAATAATCCTCAGATTTACTTGAGGAAAAAAATGAGAATGACCCTAAGTTGAGATTTACAGGGAGATATGCGTGAAGATAATCTAATAAATAAGGTATATATTAAATCTTTGTTTTCTTTTATCCTATTTTTTTTAGAAATCACACCCAATTATAGTTAGATCTTCATTAATTATTACCAGTTTAGTTTTGAGTTAGAAACTAAATGTCAATCATTTATATAAATTCTACCAAATCAGGTCAGATGAGTAATATTAGATTAAATTTATATCAATAGCCAAATGAATTGATTAAAAACAGAATGTCCAGAAAAATTTGTGAACAGTAAACACTCAGATAAGAAAAGATTTGGAAACAAATATATTAGAAATTTGGAATACATGAGAATATAATGAAATATATGAGAATAGAATTAAAAGGCAACACATAAAAAAAAAAGATTAAGGAATTAAAAACCACAAACTAAATATAGAGAGAAAGGTAAATACAGAGAGTAGTAAAACTCAGAATAACTTAAATAGCTGTATCTATTCTTTTTATACAACAGTAACCATAGAAAATAAGATTTTTAATAAAAATATAATTGTTTCAAGACTTTTAATAATTGACATATGTAAATTAGAGAAATAATTTTGTANCACCTGAGTATTTCTTTAAATACTCAAACATGTGCTACTACATTTTTTTTTCAAGTTAAGGCAAGACATTCTTGTACGGCTGACGACGGCATTGCAACTCGAGACCATGACACATGCATAG

mRNA sequence

ATGGAGAATCGAAAACAAATTATTCAGGGTGGTATTAAGAACCCAACACCTTGTACATTCAAGATGACTCTACCGGTTGAGCCAGGGTTCTCAATTCCTATATTTGATACGGTGAGTATATCCGTGCTAGTGGGATGTAAGGATTCCAATAAATTAAGGCAAGACATTCTTGTACGGCTGACGACGGCATTGCAACTCGAGACCATGACACATGCATAG

Coding sequence (CDS)

ATGGAGAATCGAAAACAAATTATTCAGGGTGGTATTAAGAACCCAACACCTTGTACATTCAAGATGACTCTACCGGTTGAGCCAGGGTTCTCAATTCCTATATTTGATACGGTGAGTATATCCGTGCTAGTGGGATGTAAGGATTCCAATAAATTAAGGCAAGACATTCTTGTACGGCTGACGACGGCATTGCAACTCGAGACCATGACACATGCATAG

Protein sequence

MENRKQIIQGGIKNPTPCTFKMTLPVEPGFSIPIFDTVSISVLVGCKDSNKLRQDILVRLTTALQLETMTHA
Homology
[Close]
BLAST of Cp4.1LG07g05640 vs. TrEMBL
Match: A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-06
Identity = 34/58 (58.62%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 7   IIQGGIKNPTPCT------------FKMTLPVEPGFSIPIFDTVSISVLVGCKDSNKL 53
           I Q G+KNP P T            FKMTL VEP FSIPI +TVS SVLVG KDSNK+
Sbjct: 109 IFQNGMKNPPPSTGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKV 166

[Close]
BLAST of Cp4.1LG07g05640 vs. NCBI nr
Match: gi|449458996|ref|XP_004147232.1| (PREDICTED: F-box protein At5g39250 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 34/58 (58.62%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 7   IIQGGIKNPTPCT------------FKMTLPVEPGFSIPIFDTVSISVLVGCKDSNKL 53
           I Q G+KNP P T            FKMTL VEP FSIPI +TVS SVLVG KDSNK+
Sbjct: 109 IFQNGMKNPPPSTGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKV 166

[Close]
BLAST of Cp4.1LG07g05640 vs. NCBI nr
Match: gi|659095831|ref|XP_008448789.1| (PREDICTED: F-box protein At5g39250 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-06
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 6   QIIQGGIKNPTPCT------------FKMTLPVEPGFSIPIFDTVSISVLVGCKDSNKL 53
           +I+Q G+K+P P T            FKMTLPVEP FSIPI + VS SVLVG KDSNK+
Sbjct: 108 RILQNGMKSPPPGTSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKV 166

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g05640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g05640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6S1_CUCSA2.2e-0658.62Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1[more]
BLAST of Cp4.1LG07g05640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g05640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458996|ref|XP_004147232.1|3.2e-0658.62PREDICTED: F-box protein At5g39250 [Cucumis sativus][more]
gi|659095831|ref|XP_008448789.1|4.2e-0655.93PREDICTED: F-box protein At5g39250 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g05640.1Cp4.1LG07g05640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g05640Wax gourdcpewgoB1036
Cp4.1LG07g05640Cucurbita pepo (Zucchini)cpecpeB149
Cp4.1LG07g05640Cucumber (Gy14) v1cgycpeB0090
Cp4.1LG07g05640Cucumber (Gy14) v1cgycpeB0092
Cp4.1LG07g05640Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g05640Cucurbita maxima (Rimu)cmacpeB800
Cp4.1LG07g05640Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g05640Cucurbita moschata (Rifu)cmocpeB753
Cp4.1LG07g05640Wild cucumber (PI 183967)cpecpiB847
Cp4.1LG07g05640Wild cucumber (PI 183967)cpecpiB840
Cp4.1LG07g05640Cucumber (Chinese Long) v2cpecuB838
Cp4.1LG07g05640Cucumber (Chinese Long) v2cpecuB844
Cp4.1LG07g05640Bottle gourd (USVL1VR-Ls)cpelsiB692
Cp4.1LG07g05640Bottle gourd (USVL1VR-Ls)cpelsiB687
Cp4.1LG07g05640Watermelon (Charleston Gray)cpewcgB750
Cp4.1LG07g05640Watermelon (Charleston Gray)cpewcgB756
Cp4.1LG07g05640Watermelon (97103) v1cpewmB784
Cp4.1LG07g05640Watermelon (97103) v1cpewmB788
Cp4.1LG07g05640Melon (DHL92) v3.5.1cpemeB758
Cp4.1LG07g05640Melon (DHL92) v3.5.1cpemeB763
Cp4.1LG07g05640Cucumber (Gy14) v2cgybcpeB878
Cp4.1LG07g05640Cucumber (Gy14) v2cgybcpeB882
Cp4.1LG07g05640Melon (DHL92) v3.6.1cpemedB899
Cp4.1LG07g05640Melon (DHL92) v3.6.1cpemedB894
Cp4.1LG07g05640Silver-seed gourdcarcpeB0193
Cp4.1LG07g05640Cucumber (Chinese Long) v3cpecucB1034
Cp4.1LG07g05640Cucumber (Chinese Long) v3cpecucB1041