Cp4.1LG07g03440 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g03440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG07 : 2210875 .. 2213141 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTGATGAGTCTTCATCTTCTTCCTCAGCATCGCGCTCTCTTCAATTCGCTCTTACGGTACACAAGTCACAAAGATTTTCAGAAGGGCAAGGCCATCCACGCTCATCTTCTCAGAACTGGTTCAATCTCCTCAGTTTACCTTTCTAACAGCCTTGTTAACTTGTATGCTAAATGCGGAAGCCTTGTGAAGGCCAAGCTTGTCTTCGACAGTATAACCAACAAAGACGTGGTTTCATGGAATTCTTTAATCAATGCCTACTCTCAACAGGGTCCCGTTGGATCTTCGTTTGTAATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACGCTGCCGAATGCCCATACTTTTGCTGGGGTTTTCACGGCTGCTTCAAGTTTATTCGAAACTTTAGGTGGCTTACAGGCCCATGCGCTTGCTATCAAGACTTCTAGCTTTTATGATGTTTTTGTCGGCAGTTCGCTTCTTAATATGTATTGCAAAATTGGGTGTTTACTGGATGCTCGTAAGGTGTTCGACAGAATGCCAGAGAGAAATTCTGTTTCGTGGGCTACTATGATTTCGGGGTATGCAATGCAAAGGAAGGCGTTTGAGGCTTGGGAATTGTTTTTATTAATGTGCCGTGACGAGGGAATTCATAATGAGTTTATCTATACCAGTGTGCTTAGTGGACTGACGGTTCCTGAACTTGTTGACTCTGGTAAGCAAATTCATTGTCTTGCCCTTAAAAATGGATTGTTATCGATTGTTTCTGTAGGGAACGCTCTTGTTACAATGTATGCTAAATGTGGGTGCTTAGATGATGCACTTAAAACATTTGAATTGTCTGGTGATAAGAACTCTATTACATGGTCAGCTATGATAACTGGCTATGCACAAGCTGGGAACTCGCATGAGGCTTTGAAGTTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACTTGGGTGCTCTGGAAGAAGGGAAACAAATGCATGGTTATTCCTTGAAGATGGGATATGAATCCCAAATCTATATAATGACAGCTTTAGTTGATATGTATGCTAAATCTGGAAGCCTAGTTGATGCACGAAAGGGGTTCGATTACTTAAAAGAACCAGACATTGTTTTGTGGACGTCCATGATTGGAGGATATGTTCAAAATGGTGAAAATGAAACTGCTTTGACTCTGTATTGTAGAATGCAAATGGAAGGGATTATGCCAAATGAGTTAACCATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCGTACAATTAAGTATGGATTCAATCTAGAAGTTCCAGTTGGGAGTGCACTTTCAACAATGTATGCAAAGTGTGGTAGTTTAGAAGATGGGAACCTGGTGTTTAGGAGGATGCCTACTAGAGATATTGTGTCATGGAATGCAATGATATCCGGTCTTTCTCAAAACGGAGAGGGTCTTAAGGCCCTTGAACTCTTCGAAGAGATGCGACAAGGCCCGACAAAACCCGACTACGTTACTTTCGTGAACATTCTTTCTGCGTGCAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTCAAGATGATGCTTGATGAGTTCGGCATTGTTCCAAGAGTCGAGCATTATGCTTGCATGGTAGACATTCTAAGCCGTGCAGGTAAGCTACTGGAAGCGAAAGAGTTCATAGAATCTGCGACGATTGATCACGGTATGTATCTATGGCGTATCTTGCTAGGAGCGTGTCGAAACTATCGAAATTATGAATTAGGAGCGTATGCAGGTGAGAAACTAATGGAGTTAGGTTCAGAAGAATCATCTGCTTATGTGTTGTTATCTAGTATCTATGCTGCATTGGGAAGGTCTGATGATGTCGAACGGGTGAGACGGGCGATGAAACTTCGAGGGGTGAATAAGGATCCAGGTTGTAGTTGGATTGAATTGAAAAGTCAAGTTCATGTGTTTGTAGTTGGCGACCAGATACATCCAGAGATTGTTAATATACGTGTAGAGTTGAGAAGATTGAGCAAACATATGAAGGATGAGCGTTCTGAATCGCAATATGATATAGATTCTATGACATTACCAGCTCAATGATTGCATGATTGAATCTGTCTCGCTCTGAGGAAGCATTGTTTTAATTAACGTTTGACTTCACCAAATACATTTTTGATAGTAACATGTTCTGTCCTGATTTTTCCTGTTAGTTATTTTAGAATAGGTGAT

mRNA sequence

AGTTGATGAGTCTTCATCTTCTTCCTCAGCATCGCGCTCTCTTCAATTCGCTCTTACGGTACACAAGTCACAAAGATTTTCAGAAGGGCAAGGCCATCCACGCTCATCTTCTCAGAACTGGTTCAATCTCCTCAGTTTACCTTTCTAACAGCCTTGTTAACTTGTATGCTAAATGCGGAAGCCTTGTGAAGGCCAAGCTTGTCTTCGACAGTATAACCAACAAAGACGTGGTTTCATGGAATTCTTTAATCAATGCCTACTCTCAACAGGGTCCCGTTGGATCTTCGTTTGTAATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACGCTGCCGAATGCCCATACTTTTGCTGGGTTTATCTATACCAGTGTGCTTAGTGGACTGACGGTTCCTGAACTTGTTGACTCTGGTAAGCAAATTCATTGTCTTGCCCTTAAAAATGGATTGTTATCGATTGTTTCTGTAGGGAACGCTCTTGTTACAATGTATGCTAAATGTGGGTGCTTAGATGATGCACTTAAAACATTTGAATTGTCTGGTGATAAGAACTCTATTACATGGTCAGCTATGATAACTGGCTATGCACAAGCTGGGAACTCGCATGAGGCTTTGAAGTTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACTTGGGTGAT

Coding sequence (CDS)

ATGAGTCTTCATCTTCTTCCTCAGCATCGCGCTCTCTTCAATTCGCTCTTACGGTACACAAGTCACAAAGATTTTCAGAAGGGCAAGGCCATCCACGCTCATCTTCTCAGAACTGGTTCAATCTCCTCAGTTTACCTTTCTAACAGCCTTGTTAACTTGTATGCTAAATGCGGAAGCCTTGTGAAGGCCAAGCTTGTCTTCGACAGTATAACCAACAAAGACGTGGTTTCATGGAATTCTTTAATCAATGCCTACTCTCAACAGGGTCCCGTTGGATCTTCGTTTGTAATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACGCTGCCGAATGCCCATACTTTTGCTGGGTTTATCTATACCAGTGTGCTTAGTGGACTGACGGTTCCTGAACTTGTTGACTCTGGTAAGCAAATTCATTGTCTTGCCCTTAAAAATGGATTGTTATCGATTGTTTCTGTAGGGAACGCTCTTGTTACAATGTATGCTAAATGTGGGTGCTTAGATGATGCACTTAAAACATTTGAATTGTCTGGTGATAAGAACTCTATTACATGGTCAGCTATGATAACTGGCTATGCACAAGCTGGGAACTCGCATGAGGCTTTGAAGTTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACTTGGGTGAT

Protein sequence

MSLHLLPQHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINACSDLGD
Homology
[Close]
BLAST of Cp4.1LG07g03440 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.5e-44
Identity = 94/228 (41.23%), Postives = 140/228 (61.40%), Query Frame = 1 

Query: 5   LLPQHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAK 64
           +LP    L       +S +    G+  HA +++  S   +Y+  SLV +Y K G +    
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173

Query: 65  LVFDSITNKDVVSWNSLINAYSQQGPVGSSF-VMELFQRMRAENTLPNAHTFAGFIYTSV 124
            VF  +  ++  +W+++++ Y+ +G V  +  V  LF R + E +       + +++T+V
Sbjct: 174 KVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGS------DSDYVFTAV 233

Query: 125 LSGLTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNS 184
           LS L     V  G+QIHC+ +KNGLL  V++ NALVTMY+KC  L++A K F+ SGD+NS
Sbjct: 234 LSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNS 293

Query: 185 ITWSAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINACSDL 232
           ITWSAM+TGY+Q G S EA+KLFS M   G KPSE+T VGV+NACSD+
Sbjct: 294 ITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDI 335

[Close]
BLAST of Cp4.1LG07g03440 vs. Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.6e-35
Identity = 86/226 (38.05%), Postives = 127/226 (56.19%), Query Frame = 1 

Query: 7   PQHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLV 66
           P    L   L   +SH    +GK IH + LR G    + L ++LVN+Y+KCGSL  A+ V
Sbjct: 549 PDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQV 608

Query: 67  FDSITNKDVVSWNSLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSG 126
           +D +   D VS +SLI+ YSQ G +   F+  LF+ M     + +  T   F  +S+L  
Sbjct: 609 YDRLPELDPVSCSSLISGYSQHGLIQDGFL--LFRDM-----VMSGFTMDSFAISSILKA 668

Query: 127 LTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITW 186
             + +    G Q+H    K GL +  SVG++L+TMY+K G +DD  K F      + I W
Sbjct: 669 AALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAW 728

Query: 187 SAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINACSDLG 233
           +A+I  YAQ G ++EAL++++ M   G KP + TFVGV++ACS  G
Sbjct: 729 TALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGG 767

[Close]
BLAST of Cp4.1LG07g03440 vs. Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.1e-35
Identity = 77/212 (36.32%), Postives = 127/212 (59.91%), Query Frame = 1 

Query: 22  HKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSL 81
           ++DF+ G   H   L+ G IS VYL +SLV LY   G +  A  VF+ +  ++VVSW ++
Sbjct: 133 NRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAM 192

Query: 82  INAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHC 141
           I+ ++Q+  V     ++L+ +MR   + PN +TF     T++LS  T    +  G+ +HC
Sbjct: 193 ISGFAQEWRV--DICLKLYSKMRKSTSDPNDYTF-----TALLSACTGSGALGQGRSVHC 252

Query: 142 LALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHE 201
             L  GL S + + N+L++MY KCG L DA + F+   +K+ ++W++MI GYAQ G + +
Sbjct: 253 QTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQ 312

Query: 202 ALKLFS-YMHFNGNKPSEFTFVGVINACSDLG 233
           A++LF   M  +G KP   T++GV+++C   G
Sbjct: 313 AIELFELMMPKSGTKPDAITYLGVLSSCRHAG 337

[Close]
BLAST of Cp4.1LG07g03440 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-34
Identity = 76/210 (36.19%), Postives = 126/210 (60.00%), Query Frame = 1 

Query: 24  DFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLIN 83
           + + GK IH  L+++G    ++    L N+YAKC  + +A+ VFD +  +D+VSWN+++ 
Sbjct: 150 ELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVA 209

Query: 84  AYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLA 143
            YSQ G   +   +E+ + M  EN  P+  T       SVL  ++   L+  GK+IH  A
Sbjct: 210 GYSQNGM--ARMALEMVKSMCEENLKPSFITIV-----SVLPAVSALRLISVGKEIHGYA 269

Query: 144 LKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEAL 203
           +++G  S+V++  ALV MYAKCG L+ A + F+   ++N ++W++MI  Y Q  N  EA+
Sbjct: 270 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 329

Query: 204 KLFSYMHFNGNKPSEFTFVGVINACSDLGD 234
            +F  M   G KP++ + +G ++AC+DLGD
Sbjct: 330 LIFQKMLDEGVKPTDVSVMGALHACADLGD 352

[Close]
BLAST of Cp4.1LG07g03440 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 6.8e-34
Identity = 78/214 (36.45%), Postives = 125/214 (58.41%), Query Frame = 1 

Query: 20  TSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWN 79
           T+  D + G+ IH+ ++R+G  S +Y+ NSL++LYA CG +  A  VFD +  KD+V+WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 80  SLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQI 139
           S+IN +++ G    +  + L+  M ++   P+     GF   S+LS       +  GK++
Sbjct: 192 SVINGFAENGKPEEA--LALYTEMNSKGIKPD-----GFTIVSLLSACAKIGALTLGKRV 251

Query: 140 HCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNS 199
           H   +K GL   +   N L+ +YA+CG +++A   F+   DKNS++W+++I G A  G  
Sbjct: 252 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 311

Query: 200 HEALKLFSYMH-FNGNKPSEFTFVGVINACSDLG 233
            EA++LF YM    G  P E TFVG++ ACS  G
Sbjct: 312 KEAIELFKYMESTEGLLPCEITFVGILYACSHCG 338

[Close]
BLAST of Cp4.1LG07g03440 vs. TrEMBL
Match: A0A0A0LK41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348180 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.9e-63
Identity = 129/205 (62.93%), Postives = 154/205 (75.12%), Query Frame = 1 

Query: 28  GKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQ 87
           G   HA  ++T +   V++ +SL+N+Y K G ++ A+ VFD+I  ++ VSW ++I+ Y+ 
Sbjct: 217 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 276

Query: 88  QGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLALKNG 147
           +     ++  ELF  MR E     AH    FIYTSVLS LTVP+LV  GKQIHCLALKNG
Sbjct: 277 ERMAFEAW--ELFLLMRREE---GAHD--KFIYTSVLSALTVPDLVHYGKQIHCLALKNG 336

Query: 148 LLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFS 207
           LLSI SVGNALVTMY KCGCLDDA KTFELSGDK+ ITWSAMITGYAQAG+SHEAL LF 
Sbjct: 337 LLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 396

Query: 208 YMHFNGNKPSEFTFVGVINACSDLG 233
            MH NGNKPSEFTFVGVINACSD+G
Sbjct: 397 NMHLNGNKPSEFTFVGVINACSDIG 414

[Close]
BLAST of Cp4.1LG07g03440 vs. TrEMBL
Match: E0CQU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00570 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.3e-59
Identity = 122/209 (58.37%), Postives = 156/209 (74.64%), Query Frame = 1 

Query: 24  DFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLIN 83
           D   G+  HA  ++  S   V++ +SL+N+Y K G   +A+ VFD++  ++ VSW ++I+
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 84  AYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLA 143
            Y+ Q     +  + LF+ MR E    N      F++TSVLS LT+PELV++GKQIHC+A
Sbjct: 183 GYASQKLAAEA--LGLFRLMRREEEGENE-----FVFTSVLSALTLPELVNNGKQIHCIA 242

Query: 144 LKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEAL 203
           +KNGLLSIVSVGNALVTMYAKCG LDDAL+TFE S DKNSITWSAMITGYAQ+G+S +AL
Sbjct: 243 VKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKAL 302

Query: 204 KLFSYMHFNGNKPSEFTFVGVINACSDLG 233
           KLFS MH +G +PSEFTFVGVINACSDLG
Sbjct: 303 KLFSSMHLSGIRPSEFTFVGVINACSDLG 324

[Close]
BLAST of Cp4.1LG07g03440 vs. TrEMBL
Match: A5AJZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031846 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.6e-58
Identity = 121/209 (57.89%), Postives = 155/209 (74.16%), Query Frame = 1 

Query: 24  DFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLIN 83
           D   G+  HA  ++  S   V++ +SL+N+Y K G   +A+ VFD++  ++ VSW ++I+
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 84  AYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLA 143
            Y+ Q     +  + LF+ MR E    N      F++TSVLS LT+PELV++GKQIHC+A
Sbjct: 183 GYASQKLAAEA--LGLFRLMRREEEGENE-----FVFTSVLSALTLPELVNNGKQIHCIA 242

Query: 144 LKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEAL 203
           +KNGLLSIVSVGNALVTMYAKCG LDDAL+TFE S DKNSITWSAMITG AQ+G+S +AL
Sbjct: 243 VKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKAL 302

Query: 204 KLFSYMHFNGNKPSEFTFVGVINACSDLG 233
           KLFS MH +G +PSEFTFVGVINACSDLG
Sbjct: 303 KLFSSMHLSGIRPSEFTFVGVINACSDLG 324

[Close]
BLAST of Cp4.1LG07g03440 vs. TrEMBL
Match: A0A067KKT6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08147 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.9e-55
Identity = 113/205 (55.12%), Postives = 152/205 (74.15%), Query Frame = 1 

Query: 28  GKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQ 87
           G+   A  +RT S   V++ +SL+N+Y K G L++A+ VFD +  ++ V+W ++I+ Y+ 
Sbjct: 129 GQQAQALAIRTVSFYDVFVGSSLLNMYCKAGLLLEARKVFDEMPERNSVTWATMISGYAI 188

Query: 88  QGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLALKNG 147
           Q   G +  + +F+ MR E+   N      F++TS LS L +P+ +DSGKQIHCLA+KNG
Sbjct: 189 QRLAGEA--LGIFELMRREDEGLNE-----FVFTSALSALAIPDFIDSGKQIHCLAVKNG 248

Query: 148 LLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFS 207
           LL+ VSV NALVTMYAKCG LDD+L+ FE+S DK+SITWSAMITGYAQ+G+SH+ALKLFS
Sbjct: 249 LLAFVSVLNALVTMYAKCGGLDDSLQVFEMSSDKDSITWSAMITGYAQSGDSHKALKLFS 308

Query: 208 YMHFNGNKPSEFTFVGVINACSDLG 233
            MHF G  PSEFT VGV+NACSD+G
Sbjct: 309 RMHFAGINPSEFTLVGVLNACSDIG 326

[Close]
BLAST of Cp4.1LG07g03440 vs. TrEMBL
Match: B9R8H7_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1599850 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-54
Identity = 114/203 (56.16%), Postives = 146/203 (71.92%), Query Frame = 1 

Query: 28  GKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQ 87
           G+  HA  ++      V++ +SL+N+Y K G L +A+ VFD +  ++ V+W ++I+ Y+ 
Sbjct: 130 GQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAI 189

Query: 88  QGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLALKNG 147
           Q   G +F  E+F+ MR E    N      F +TSVLS L VPE VDSGKQIHCLA+K G
Sbjct: 190 QRLAGEAF--EVFELMRREEEDVNE-----FAFTSVLSALAVPEFVDSGKQIHCLAVKTG 249

Query: 148 LLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFS 207
           LL  +S+ NALVTMYAKCG LDD+L+ FE+S DKNSITWSAMITGYAQ+G+SH+ALKLFS
Sbjct: 250 LLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFS 309

Query: 208 YMHFNGNKPSEFTFVGVINACSD 231
            MHF G  PSEFT VGV+NACSD
Sbjct: 310 RMHFAGINPSEFTLVGVLNACSD 325

[Close]
BLAST of Cp4.1LG07g03440 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 178.3 bits (451), Expect = 5.4e-45
Identity = 94/228 (41.23%), Postives = 140/228 (61.40%), Query Frame = 1 

Query: 5   LLPQHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAK 64
           +LP    L       +S +    G+  HA +++  S   +Y+  SLV +Y K G +    
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173

Query: 65  LVFDSITNKDVVSWNSLINAYSQQGPVGSSF-VMELFQRMRAENTLPNAHTFAGFIYTSV 124
            VF  +  ++  +W+++++ Y+ +G V  +  V  LF R + E +       + +++T+V
Sbjct: 174 KVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGS------DSDYVFTAV 233

Query: 125 LSGLTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNS 184
           LS L     V  G+QIHC+ +KNGLL  V++ NALVTMY+KC  L++A K F+ SGD+NS
Sbjct: 234 LSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNS 293

Query: 185 ITWSAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINACSDL 232
           ITWSAM+TGY+Q G S EA+KLFS M   G KPSE+T VGV+NACSD+
Sbjct: 294 ITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDI 335

[Close]
BLAST of Cp4.1LG07g03440 vs. TAIR10
Match: AT1G74600.1 (AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 86/226 (38.05%), Postives = 127/226 (56.19%), Query Frame = 1 

Query: 7   PQHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLV 66
           P    L   L   +SH    +GK IH + LR G    + L ++LVN+Y+KCGSL  A+ V
Sbjct: 549 PDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQV 608

Query: 67  FDSITNKDVVSWNSLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSG 126
           +D +   D VS +SLI+ YSQ G +   F+  LF+ M     + +  T   F  +S+L  
Sbjct: 609 YDRLPELDPVSCSSLISGYSQHGLIQDGFL--LFRDM-----VMSGFTMDSFAISSILKA 668

Query: 127 LTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITW 186
             + +    G Q+H    K GL +  SVG++L+TMY+K G +DD  K F      + I W
Sbjct: 669 AALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAW 728

Query: 187 SAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINACSDLG 233
           +A+I  YAQ G ++EAL++++ M   G KP + TFVGV++ACS  G
Sbjct: 729 TALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGG 767

[Close]
BLAST of Cp4.1LG07g03440 vs. TAIR10
Match: AT2G37320.1 (AT2G37320.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 148.7 bits (374), Expect = 4.5e-36
Identity = 77/212 (36.32%), Postives = 127/212 (59.91%), Query Frame = 1 

Query: 22  HKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSL 81
           ++DF+ G   H   L+ G IS VYL +SLV LY   G +  A  VF+ +  ++VVSW ++
Sbjct: 133 NRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAM 192

Query: 82  INAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHC 141
           I+ ++Q+  V     ++L+ +MR   + PN +TF     T++LS  T    +  G+ +HC
Sbjct: 193 ISGFAQEWRV--DICLKLYSKMRKSTSDPNDYTF-----TALLSACTGSGALGQGRSVHC 252

Query: 142 LALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHE 201
             L  GL S + + N+L++MY KCG L DA + F+   +K+ ++W++MI GYAQ G + +
Sbjct: 253 QTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQ 312

Query: 202 ALKLFS-YMHFNGNKPSEFTFVGVINACSDLG 233
           A++LF   M  +G KP   T++GV+++C   G
Sbjct: 313 AIELFELMMPKSGTKPDAITYLGVLSSCRHAG 337

[Close]
BLAST of Cp4.1LG07g03440 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-35
Identity = 76/210 (36.19%), Postives = 126/210 (60.00%), Query Frame = 1 

Query: 24  DFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLIN 83
           + + GK IH  L+++G    ++    L N+YAKC  + +A+ VFD +  +D+VSWN+++ 
Sbjct: 150 ELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVA 209

Query: 84  AYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLA 143
            YSQ G   +   +E+ + M  EN  P+  T       SVL  ++   L+  GK+IH  A
Sbjct: 210 GYSQNGM--ARMALEMVKSMCEENLKPSFITIV-----SVLPAVSALRLISVGKEIHGYA 269

Query: 144 LKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEAL 203
           +++G  S+V++  ALV MYAKCG L+ A + F+   ++N ++W++MI  Y Q  N  EA+
Sbjct: 270 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 329

Query: 204 KLFSYMHFNGNKPSEFTFVGVINACSDLGD 234
            +F  M   G KP++ + +G ++AC+DLGD
Sbjct: 330 LIFQKMLDEGVKPTDVSVMGALHACADLGD 352

[Close]
BLAST of Cp4.1LG07g03440 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-35
Identity = 78/214 (36.45%), Postives = 125/214 (58.41%), Query Frame = 1 

Query: 20  TSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWN 79
           T+  D + G+ IH+ ++R+G  S +Y+ NSL++LYA CG +  A  VFD +  KD+V+WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 80  SLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQI 139
           S+IN +++ G    +  + L+  M ++   P+     GF   S+LS       +  GK++
Sbjct: 192 SVINGFAENGKPEEA--LALYTEMNSKGIKPD-----GFTIVSLLSACAKIGALTLGKRV 251

Query: 140 HCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNS 199
           H   +K GL   +   N L+ +YA+CG +++A   F+   DKNS++W+++I G A  G  
Sbjct: 252 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 311

Query: 200 HEALKLFSYMH-FNGNKPSEFTFVGVINACSDLG 233
            EA++LF YM    G  P E TFVG++ ACS  G
Sbjct: 312 KEAIELFKYMESTEGLLPCEITFVGILYACSHCG 338

[Close]
BLAST of Cp4.1LG07g03440 vs. NCBI nr
Match: gi|659089060|ref|XP_008445307.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.4e-63
Identity = 137/228 (60.09%), Postives = 166/228 (72.81%), Query Frame = 1 

Query: 1   MSLHLLP-QHRALFNSLLRYTSHKDFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGS 60
           MSL+LLP QHR+ F+ LLRYT  KD QKGKAIHA LLRTGS  SVYL+NSLVNLYAKCGS
Sbjct: 1   MSLYLLPPQHRSFFDLLLRYTRQKDLQKGKAIHAQLLRTGSCCSVYLTNSLVNLYAKCGS 60

Query: 61  LVKAKLVFDSITNKDVVSWNSLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFI 120
           L+KAKLVF+SI+NKDVVSWN LIN YSQ+G VGSSFVMELFQRMRAENTLPNAHTF+G +
Sbjct: 61  LLKAKLVFESISNKDVVSWNCLINGYSQKGTVGSSFVMELFQRMRAENTLPNAHTFSG-V 120

Query: 121 YTSVLSGLTVPELVDSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSG 180
           +T+  S    PE    G Q H LA+K      V VG++L+ MY K GCL DA K F+   
Sbjct: 121 FTAASSS---PETF-GGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCLLDARKVFDTIP 180

Query: 181 DKNSITWSAMITGYAQAGNSHEALKLFSYMHFNGNKPSEFTFVGVINA 228
           ++N ++W+ MI+GYA    + EA +LF  M        +F + GV++A
Sbjct: 181 ERNIVSWATMISGYAMERMALEAWELFLLMRREEGAHDKFIYTGVLSA 223

[Close]
BLAST of Cp4.1LG07g03440 vs. NCBI nr
Match: gi|778670421|ref|XP_004142988.2| (PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 4.1e-63
Identity = 129/205 (62.93%), Postives = 154/205 (75.12%), Query Frame = 1 

Query: 28  GKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQ 87
           G   HA  ++T +   V++ +SL+N+Y K G ++ A+ VFD+I  ++ VSW ++I+ Y+ 
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 88  QGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLALKNG 147
           +     ++  ELF  MR E     AH    FIYTSVLS LTVP+LV  GKQIHCLALKNG
Sbjct: 192 ERMAFEAW--ELFLLMRREE---GAHD--KFIYTSVLSALTVPDLVHYGKQIHCLALKNG 251

Query: 148 LLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFS 207
           LLSI SVGNALVTMY KCGCLDDA KTFELSGDK+ ITWSAMITGYAQAG+SHEAL LF 
Sbjct: 252 LLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 311

Query: 208 YMHFNGNKPSEFTFVGVINACSDLG 233
            MH NGNKPSEFTFVGVINACSD+G
Sbjct: 312 NMHLNGNKPSEFTFVGVINACSDIG 329

[Close]
BLAST of Cp4.1LG07g03440 vs. NCBI nr
Match: gi|700207161|gb|KGN62280.1| (hypothetical protein Csa_2G348180 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 4.1e-63
Identity = 129/205 (62.93%), Postives = 154/205 (75.12%), Query Frame = 1 

Query: 28  GKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQ 87
           G   HA  ++T +   V++ +SL+N+Y K G ++ A+ VFD+I  ++ VSW ++I+ Y+ 
Sbjct: 217 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 276

Query: 88  QGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLALKNG 147
           +     ++  ELF  MR E     AH    FIYTSVLS LTVP+LV  GKQIHCLALKNG
Sbjct: 277 ERMAFEAW--ELFLLMRREE---GAHD--KFIYTSVLSALTVPDLVHYGKQIHCLALKNG 336

Query: 148 LLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFS 207
           LLSI SVGNALVTMY KCGCLDDA KTFELSGDK+ ITWSAMITGYAQAG+SHEAL LF 
Sbjct: 337 LLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 396

Query: 208 YMHFNGNKPSEFTFVGVINACSDLG 233
            MH NGNKPSEFTFVGVINACSD+G
Sbjct: 397 NMHLNGNKPSEFTFVGVINACSDIG 414

[Close]
BLAST of Cp4.1LG07g03440 vs. NCBI nr
Match: gi|225459793|ref|XP_002284799.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Vitis vinifera])

HSP 1 Score: 236.1 bits (601), Expect = 6.1e-59
Identity = 122/209 (58.37%), Postives = 156/209 (74.64%), Query Frame = 1 

Query: 24  DFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLIN 83
           D   G+  HA  ++  S   V++ +SL+N+Y K G   +A+ VFD++  ++ VSW ++I+
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 84  AYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLA 143
            Y+ Q     +  + LF+ MR E    N      F++TSVLS LT+PELV++GKQIHC+A
Sbjct: 183 GYASQKLAAEA--LGLFRLMRREEEGENE-----FVFTSVLSALTLPELVNNGKQIHCIA 242

Query: 144 LKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEAL 203
           +KNGLLSIVSVGNALVTMYAKCG LDDAL+TFE S DKNSITWSAMITGYAQ+G+S +AL
Sbjct: 243 VKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKAL 302

Query: 204 KLFSYMHFNGNKPSEFTFVGVINACSDLG 233
           KLFS MH +G +PSEFTFVGVINACSDLG
Sbjct: 303 KLFSSMHLSGIRPSEFTFVGVINACSDLG 324

[Close]
BLAST of Cp4.1LG07g03440 vs. NCBI nr
Match: gi|147780613|emb|CAN69119.1| (hypothetical protein VITISV_031846 [Vitis vinifera])

HSP 1 Score: 233.0 bits (593), Expect = 5.2e-58
Identity = 121/209 (57.89%), Postives = 155/209 (74.16%), Query Frame = 1 

Query: 24  DFQKGKAIHAHLLRTGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLIN 83
           D   G+  HA  ++  S   V++ +SL+N+Y K G   +A+ VFD++  ++ VSW ++I+
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 84  AYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGFIYTSVLSGLTVPELVDSGKQIHCLA 143
            Y+ Q     +  + LF+ MR E    N      F++TSVLS LT+PELV++GKQIHC+A
Sbjct: 183 GYASQKLAAEA--LGLFRLMRREEEGENE-----FVFTSVLSALTLPELVNNGKQIHCIA 242

Query: 144 LKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEAL 203
           +KNGLLSIVSVGNALVTMYAKCG LDDAL+TFE S DKNSITWSAMITG AQ+G+S +AL
Sbjct: 243 VKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKAL 302

Query: 204 KLFSYMHFNGNKPSEFTFVGVINACSDLG 233
           KLFS MH +G +PSEFTFVGVINACSDLG
Sbjct: 303 KLFSSMHLSGIRPSEFTFVGVINACSDLG 324

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g03440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP181_ARATH9.5e-4441.23Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN... [more]
PP121_ARATH3.6e-3538.05Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidop... [more]
PP192_ARATH8.1e-3536.32Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN... [more]
PPR32_ARATH2.3e-3436.19Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
PP330_ARATH6.8e-3436.45Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG07g03440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK41_CUCSA2.9e-6362.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348180 PE=4 SV=1[more]
E0CQU2_VITVI4.3e-5958.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00570 PE=4 SV=... [more]
A5AJZ0_VITVI3.6e-5857.89Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031846 PE=4 SV=1[more]
A0A067KKT6_JATCU2.9e-5555.12Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08147 PE=4 SV=1[more]
B9R8H7_RICCO1.4e-5456.16Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
BLAST of Cp4.1LG07g03440 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33680.15.4e-4541.23 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G74600.12.0e-3638.05 pentatricopeptide (PPR) repeat-containing protein[more]
AT2G37320.14.5e-3636.32 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G11290.11.3e-3536.19 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21065.13.9e-3536.45 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG07g03440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089060|ref|XP_008445307.1|1.4e-6360.09PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Cucumis melo][more]
gi|778670421|ref|XP_004142988.2|4.1e-6362.93PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Cucumis sativu... [more]
gi|700207161|gb|KGN62280.1|4.1e-6362.93hypothetical protein Csa_2G348180 [Cucumis sativus][more]
gi|225459793|ref|XP_002284799.1|6.1e-5958.37PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Vitis vinifera... [more]
gi|147780613|emb|CAN69119.1|5.2e-5857.89hypothetical protein VITISV_031846 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g03440.1Cp4.1LG07g03440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 76..104
score: 0.0084coord: 48..73
score: 0.034coord: 156..176
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 181..228
score: 9.4
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 76..112
score: 0.0027coord: 184..217
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 182..216
score: 11.992coord: 43..73
score: 6.785coord: 116..150
score: 5.141coord: 151..181
score: 5.656coord: 74..110
score: 10
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 26..232
score: 5.0E
NoneNo IPR availablePANTHERPTHR24015:SF47SUBFAMILY NOT NAMEDcoord: 26..232
score: 5.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g03440MELO3C011331.2Melon (DHL92) v3.6.1cpemedB897
Cp4.1LG07g03440CsaV3_2G024520Cucumber (Chinese Long) v3cpecucB1018
Cp4.1LG07g03440CsGy2G016910Cucumber (Gy14) v2cgybcpeB275
Cp4.1LG07g03440Carg03969Silver-seed gourdcarcpeB1368
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g03440Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG07g03440Cucumber (Gy14) v1cgycpeB1047
Cp4.1LG07g03440Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g03440Cucurbita maxima (Rimu)cmacpeB797
Cp4.1LG07g03440Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g03440Cucurbita moschata (Rifu)cmocpeB750
Cp4.1LG07g03440Wild cucumber (PI 183967)cpecpiB825
Cp4.1LG07g03440Cucumber (Chinese Long) v2cpecuB824
Cp4.1LG07g03440Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g03440Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g03440Watermelon (97103) v1cpewmB782
Cp4.1LG07g03440Melon (DHL92) v3.5.1cpemeB761
Cp4.1LG07g03440Silver-seed gourdcarcpeB0205
Cp4.1LG07g03440Wax gourdcpewgoB1029