Cp4.1LG07g01220 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g01220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DNA-directed RNA polymerase subunit beta
Location	Cp4.1LG07 : 626522 .. 627172 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGAAATTCTCCGAGAACCAAGACTATGAGGCGTTGCGCGAGCTGTTCAGACACCATATAGAATCGTTTGATCACCTCGTCGATGCGGGATTGGAGACTCTCATGAACAGCATCAAACCCGTCGAAATTTACGACTCCTTCACCGACAGAAAGCTTAGAAATATCCTTCATATGATTCTTTATGGCGTGGTTTTATTATTCTGTTATCTTTTANGGGGGGGGGGGGGGGGGGGGGGTTGATTTCTGGTGCATGTTTATTGCCTTGTTCTCTTGCTGTTACTTTGATTTGTCTGTTTAAACTGATGCATTGGACGAATCTCATCATACATTTGATAATTTTGCCCGGTCGATGTTAATCATTGACTTATAGTGGCGGAAAAGTAGATGGAGCTTTCTCTTCCATCCCCCTCACTGTTTTTCTCTTTGTAAGTTGGGAATTGGAGCATACGAGTGAGTGCAATCATGAATTTAGTAGTCGTAGCGTAGAAAAAATACATATTATTTTCCAATCAAGTAAATTTGGATGATGCACGTTCGAAGTATAAACATAGTGATGGATGGAGGGGTTTGATGTGGTGGCTTCAGAGCAATGTGGAGTTAGCTGTGGTGGCTTCATCCAATGTGCAAAGAAAACCATCAATGTAA

mRNA sequence

ATGGTGGTGAAATTCTCCGAGAACCAAGACTATGAGGCGTTGCGCGAGCTGTTCAGACACCATATAGAATCGTTTGATCACCTCGTCGATGCGGGATTGGAGACTCTCATGAACAGCATCAAACCCGTCGAAATTTACGACTCCTTCACCGACAGAAAGCTTAGAAATATCCTTCATATGATTCTTTATGGCGTGAGCAATGTGGAGTTAGCTGTGGTGGCTTCATCCAATGTGCAAAGAAAACCATCAATGTAA

Coding sequence (CDS)

ATGGTGGTGAAATTCTCCGAGAACCAAGACTATGAGGCGTTGCGCGAGCTGTTCAGACACCATATAGAATCGTTTGATCACCTCGTCGATGCGGGATTGGAGACTCTCATGAACAGCATCAAACCCGTCGAAATTTACGACTCCTTCACCGACAGAAAGCTTAGAAATATCCTTCATATGATTCTTTATGGCGTGAGCAATGTGGAGTTAGCTGTGGTGGCTTCATCCAATGTGCAAAGAAAACCATCAATGTAA

Protein sequence

MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNILHMILYGVSNVELAVVASSNVQRKPSM

Homology

[Close]

BLAST of Cp4.1LG07g01220 vs. TrEMBL
Match: A0A0A0KFX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G400280 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-24
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNILHM 60
          MVVKF+EN+DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFT++KLRNIL M
Sbjct: 1  MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRNILIM 60

Query: 61 ILYGV 66
           LYG+
Sbjct: 61 NLYGL 65

[Close]

BLAST of Cp4.1LG07g01220 vs. TrEMBL
Match: A0A0B2RZ76_GLYSO (Putative DNA-directed RNA polymerase I subunit RPA2 OS=Glycine soja GN=glysoja_007421 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNIL 59
          MV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVEI+D FT  KLRNIL
Sbjct: 1  MVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEIFDDFTSTKLRNIL 58

[Close]

BLAST of Cp4.1LG07g01220 vs. TrEMBL
Match: M5Y2I5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024690mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.3e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1


Query: 6  SENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNILHMILYGV 65
          +E++DY A+RELFRHHIESFDH V AGLET++N IKP+E+ DS T   L NIL   L+ +
Sbjct: 7  AESEDYAAVRELFRHHIESFDHFVTAGLETMLNKIKPIEVVDSSTGTSLANILSFFLFKI 66

[Close]

BLAST of Cp4.1LG07g01220 vs. TrEMBL
Match: A0A0B2RSS0_GLYSO (DNA-directed RNA polymerase subunit beta OS=Glycine soja GN=glysoja_043959 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLR 56
          MVVK     D+EALRELF+HHIESFD++ DAGLET++  IKP+E++D FT  KLR
Sbjct: 1  MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLR 55

[Close]

BLAST of Cp4.1LG07g01220 vs. TrEMBL
Match: K7MME1_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_17G183400 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLR 56
          MVVK     D+EALRELF+HHIESFD++ DAGLET++  IKP+E++D FT  KLR
Sbjct: 1  MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLR 55

[Close]

BLAST of Cp4.1LG07g01220 vs. NCBI nr
Match: gi|700192550|gb|KGN47754.1| (hypothetical protein Csa_6G400280 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNILHM 60
          MVVKF+EN+DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFT++KLRNIL M
Sbjct: 1  MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRNILIM 60

Query: 61 ILYGV 66
           LYG+
Sbjct: 61 NLYGL 65

[Close]

BLAST of Cp4.1LG07g01220 vs. NCBI nr
Match: gi|449458081|ref|XP_004146776.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-21
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLR 56
          MVVKF+EN+DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFT++KLR
Sbjct: 1  MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLR 55

[Close]

BLAST of Cp4.1LG07g01220 vs. NCBI nr
Match: gi|659089195|ref|XP_008445376.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 7.0e-21
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLR 56
          MVVKF EN+DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFT++KLR
Sbjct: 1  MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLR 55

[Close]

BLAST of Cp4.1LG07g01220 vs. NCBI nr
Match: gi|734415306|gb|KHN37718.1| (Putative DNA-directed RNA polymerase I subunit RPA2 [Glycine soja])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 1  MVVKFSENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNIL 59
          MV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVEI+D FT  KLRNIL
Sbjct: 1  MVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEIFDDFTSTKLRNIL 58

[Close]

BLAST of Cp4.1LG07g01220 vs. NCBI nr
Match: gi|596253118|ref|XP_007224731.1| (hypothetical protein PRUPE_ppa024690mg, partial [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1


Query: 6  SENQDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTDRKLRNILHMILYGV 65
          +E++DY A+RELFRHHIESFDH V AGLET++N IKP+E+ DS T   L NIL   L+ +
Sbjct: 7  AESEDYAAVRELFRHHIESFDHFVTAGLETMLNKIKPIEVVDSSTGTSLANILSFFLFKI 66

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g01220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g01220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFX3_CUCSA	1.2e-24	89.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G400280 PE=4 SV=1	[more]
A0A0B2RZ76_GLYSO	1.3e-13	67.24	Putative DNA-directed RNA polymerase I subunit RPA2 OS=Glycine soja GN=glysoja_0...	[more]
M5Y2I5_PRUPE	8.3e-13	60.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024690mg PE=4 S...	[more]
A0A0B2RSS0_GLYSO	2.4e-12	63.64	DNA-directed RNA polymerase subunit beta OS=Glycine soja GN=glysoja_043959 PE=3 ...	[more]
K7MME1_SOYBN	2.4e-12	63.64	DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_17G183400 PE=3 ...	[more]

BLAST of Cp4.1LG07g01220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g01220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192550\|gb\|KGN47754.1\|	1.8e-24	89.23	hypothetical protein Csa_6G400280 [Cucumis sativus]	[more]
gi\|449458081\|ref\|XP_004146776.1\|	5.3e-21	92.73	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus]	[more]
gi\|659089195\|ref\|XP_008445376.1\|	7.0e-21	92.73	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo]	[more]
gi\|734415306\|gb\|KHN37718.1\|	1.8e-13	67.24	Putative DNA-directed RNA polymerase I subunit RPA2 [Glycine soja]	[more]
gi\|596253118\|ref\|XP_007224731.1\|	1.2e-12	60.00	hypothetical protein PRUPE_ppa024690mg, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g01220.1	Cp4.1LG07g01220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g01220	Csa6G400280	Cucumber (Chinese Long) v2	cpecuB842
Cp4.1LG07g01220	ClCG08G010810	Watermelon (Charleston Gray)	cpewcgB749
Cp4.1LG07g01220	CsaV3_6G035730	Cucumber (Chinese Long) v3	cpecucB1037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g01220	Melon (DHL92) v3.6.1	cpemedB891
Cp4.1LG07g01220	Silver-seed gourd	carcpeB0207
Cp4.1LG07g01220	Silver-seed gourd	carcpeB0925
Cp4.1LG07g01220	Wax gourd	cpewgoB1049
Cp4.1LG07g01220	Cucurbita pepo (Zucchini)	cpecpeB138
Cp4.1LG07g01220	Cucumber (Gy14) v1	cgycpeB0091
Cp4.1LG07g01220	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g01220	Cucurbita maxima (Rimu)	cmacpeB791
Cp4.1LG07g01220	Cucurbita moschata (Rifu)	cmocpeB174
Cp4.1LG07g01220	Cucurbita moschata (Rifu)	cmocpeB744
Cp4.1LG07g01220	Wild cucumber (PI 183967)	cpecpiB845
Cp4.1LG07g01220	Bottle gourd (USVL1VR-Ls)	cpelsiB686
Cp4.1LG07g01220	Watermelon (97103) v1	cpewmB783
Cp4.1LG07g01220	Melon (DHL92) v3.5.1	cpemeB755
Cp4.1LG07g01220	Cucumber (Gy14) v2	cgybcpeB277
Cp4.1LG07g01220	Cucumber (Gy14) v2	cgybcpeB880