Cp4.1LG07g00230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g00230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP2/ERF domain-containing transcription factor
LocationCp4.1LG07 : 143067 .. 143534 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTCCTTCGCGATTTCCTCAACTTCCCTTCGTCCAATTGTAGCCTGAACCCAGGTTCCATTAACAATACCACTCCAGTAATTTCCAAGTCTTTGGGTGACCCCCTTCACCAAAACTACTCCAGCTCCGAGTTTGTCCCCAAGGAGGACTCCCCGGATTCGGGGTTGTTAGAGGAGATAATTCACGGCTTCTTCCCCAAATCCCATTCCAATTCTTCCACTCCCACCACTAATTTCAACTCCGACTTGCCCTTTGATGCCTTAAAAAATGACAATAACGCCGCTAACAATCTGGAGCATTTGGATAACTTGGATTACCCGGATTCTATTCACCACATCCTGGACAACTTCAACGCACCTCAGCTTGGGCTGCCTCATGGGCATCCTCAGAATTTGATTCTGGATGATATTTTCCACTGCCCGGAACTCTTAAATCTACCTGCACCAGAACTCGAAAACGCTTGA

mRNA sequence

ATGCTTCTCCTTCGCGATTTCCTCAACTTCCCTTCGTCCAATTGTAGCCTGAACCCAGGTTCCATTAACAATACCACTCCAGTAATTTCCAAGTCTTTGGGTGACCCCCTTCACCAAAACTACTCCAGCTCCGAGTTTGTCCCCAAGGAGGACTCCCCGGATTCGGGGTTGTTAGAGGAGATAATTCACGGCTTCTTCCCCAAATCCCATTCCAATTCTTCCACTCCCACCACTAATTTCAACTCCGACTTGCCCTTTGATGCCTTAAAAAATGACAATAACGCCGCTAACAATCTGGAGCATTTGGATAACTTGGATTACCCGGATTCTATTCACCACATCCTGGACAACTTCAACGCACCTCAGCTTGGGCTGCCTCATGGGCATCCTCAGAATTTGATTCTGGATGATATTTTCCACTGCCCGGAACTCTTAAATCTACCTGCACCAGAACTCGAAAACGCTTGA

Coding sequence (CDS)

ATGCTTCTCCTTCGCGATTTCCTCAACTTCCCTTCGTCCAATTGTAGCCTGAACCCAGGTTCCATTAACAATACCACTCCAGTAATTTCCAAGTCTTTGGGTGACCCCCTTCACCAAAACTACTCCAGCTCCGAGTTTGTCCCCAAGGAGGACTCCCCGGATTCGGGGTTGTTAGAGGAGATAATTCACGGCTTCTTCCCCAAATCCCATTCCAATTCTTCCACTCCCACCACTAATTTCAACTCCGACTTGCCCTTTGATGCCTTAAAAAATGACAATAACGCCGCTAACAATCTGGAGCATTTGGATAACTTGGATTACCCGGATTCTATTCACCACATCCTGGACAACTTCAACGCACCTCAGCTTGGGCTGCCTCATGGGCATCCTCAGAATTTGATTCTGGATGATATTTTCCACTGCCCGGAACTCTTAAATCTACCTGCACCAGAACTCGAAAACGCTTGA

Protein sequence

MLLLRDFLNFPSSNCSLNPGSINNTTPVISKSLGDPLHQNYSSSEFVPKEDSPDSGLLEEIIHGFFPKSHSNSSTPTTNFNSDLPFDALKNDNNAANNLEHLDNLDYPDSIHHILDNFNAPQLGLPHGHPQNLILDDIFHCPELLNLPAPELENA
Homology
[Close]
BLAST of Cp4.1LG07g00230 vs. TrEMBL
Match: A0A0A0LMT0_CUCSA (AP2/ERF domain-containing transcription factor OS=Cucumis sativus GN=Csa_2G349090 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 84/170 (49.41%), Postives = 104/170 (61.18%), Query Frame = 1 

Query: 1   MLLLRDFLNFPSSNC--------SLNPGSINNTTPVISKSLGDPLHQNYSSSEFVPKEDS 60
           MLLLRDFLNFPSSN         S+N  + NN+T  I+     P  +NYSS EF+P +DS
Sbjct: 198 MLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPP--ENYSS-EFLP-KDS 257

Query: 61  PDSGLLEEIIHGFFPKSHSNSSTPTTNFNSDLPFDALKNDNNAANNLEHLDNLDY---PD 120
           PDSGLLEE+IHGFFPKSH +++      NSD  F+    + NA  + +HLD LDY    D
Sbjct: 258 PDSGLLEEVIHGFFPKSHDSNTN-----NSDDYFNNNDENKNANLSGQHLDLLDYQLADD 317

Query: 121 SIHH----ILDNFNAPQLGLPHGHPQNLILDDIFHCPELLNLPAPELENA 156
           S ++     L N + P  G   G   NLILDDIF CPELLN   P+L+NA
Sbjct: 318 SFNNNNNTTLINQDIPDHGRLFGDAHNLILDDIFQCPELLNPFPPKLQNA 358

[Close]
BLAST of Cp4.1LG07g00230 vs. TrEMBL
Match: A0A0C5ACN5_BETPL (ERF6 protein OS=Betula platyphylla GN=ERF6 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 61/173 (35.26%), Postives = 73/173 (42.20%), Query Frame = 1 

Query: 9   NFPSSNCSLNPGSINNTTPVISKSL--GDPLH----QNYSSSEFVPKEDSPDSGLLEEII 68
           NF  S+  L   S+N T     ++   G P+     Q    SEF PKE S DSGLLEEII
Sbjct: 209 NFHFSHTFLGSSSVNPTAIDSHQTYNSGGPIRTTTQQAVDDSEFFPKEPS-DSGLLEEII 268

Query: 69  HGFFPKSHSNSSTPTTNFN--SDLPFDALKNDNNAANNLEHLD-NLDYPDSIHHILDNFN 128
           HGFFPK  S  S   TN    SD     LK         EH   + DY        +N N
Sbjct: 269 HGFFPKPSSKRSCDETNLAQISDTYDHGLKR----GIKHEHFGLSFDYQGIPQQQFENLN 328

Query: 129 -------APQLGLPHGHPQNL----------ILDDIFHCPELLNLPAPELENA 156
                    Q  LP G+              +LDD+F  PEL N  A  ++NA
Sbjct: 329 GARNELSVSQAALPFGYEMQAMNFQSAGPESVLDDVFQYPELWNAFAARVQNA 376

[Close]
BLAST of Cp4.1LG07g00230 vs. NCBI nr
Match: gi|449450620|ref|XP_004143060.1| (PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 84/170 (49.41%), Postives = 104/170 (61.18%), Query Frame = 1 

Query: 1   MLLLRDFLNFPSSNC--------SLNPGSINNTTPVISKSLGDPLHQNYSSSEFVPKEDS 60
           MLLLRDFLNFPSSN         S+N  + NN+T  I+     P  +NYSS EF+P +DS
Sbjct: 198 MLLLRDFLNFPSSNYNHSSKPSYSINTTTNNNSTTKITPPPPPP--ENYSS-EFLP-KDS 257

Query: 61  PDSGLLEEIIHGFFPKSHSNSSTPTTNFNSDLPFDALKNDNNAANNLEHLDNLDY---PD 120
           PDSGLLEE+IHGFFPKSH +++      NSD  F+    + NA  + +HLD LDY    D
Sbjct: 258 PDSGLLEEVIHGFFPKSHDSNTN-----NSDDYFNNNDENKNANLSGQHLDLLDYQLADD 317

Query: 121 SIHH----ILDNFNAPQLGLPHGHPQNLILDDIFHCPELLNLPAPELENA 156
           S ++     L N + P  G   G   NLILDDIF CPELLN   P+L+NA
Sbjct: 318 SFNNNNNTTLINQDIPDHGRLFGDAHNLILDDIFQCPELLNPFPPKLQNA 358

[Close]
BLAST of Cp4.1LG07g00230 vs. NCBI nr
Match: gi|659087290|ref|XP_008444372.1| (PREDICTED: ethylene-responsive transcription factor ESR1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 79/171 (46.20%), Postives = 102/171 (59.65%), Query Frame = 1 

Query: 1   MLLLRDFLNFPSSNC--SLNPG---------SINNTTPVISKSLGDPLHQNYSSSEFVPK 60
           MLLLRDFLNFPSSN   S  P          + NN     +K    P  +NYSS EF+P 
Sbjct: 194 MLLLRDFLNFPSSNYNHSSKPSYPINTTTTTTTNNNNSSTTKITPPPPPENYSS-EFLP- 253

Query: 61  EDSPDSGLLEEIIHGFFPKSHSNSSTPTTN--FNSDLPFDALKNDNNAANNLEHLDNLDY 120
           +DSPDSGLLEE+IHGFFPKSH +++   ++  FN++   D  KN N + +NL+ LD    
Sbjct: 254 KDSPDSGLLEEVIHGFFPKSHDSNNINNSDDYFNNN---DENKNANLSGHNLDLLDYQLA 313

Query: 121 PDSIHH---ILDNFNAPQLGLPHGHPQNLILDDIFHCPELLNLPAPELENA 156
            ++ ++    L N +AP  G   G   NLILDDIF CPELLN    +L+NA
Sbjct: 314 DENFNNNNTALINQDAPDHGRLFGDAHNLILDDIFQCPELLNPFPSKLQNA 359

[Close]
BLAST of Cp4.1LG07g00230 vs. NCBI nr
Match: gi|755257701|gb|AJK26926.1| (ethylene response factor protein 6 [Betula platyphylla])

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 61/173 (35.26%), Postives = 73/173 (42.20%), Query Frame = 1 

Query: 9   NFPSSNCSLNPGSINNTTPVISKSL--GDPLH----QNYSSSEFVPKEDSPDSGLLEEII 68
           NF  S+  L   S+N T     ++   G P+     Q    SEF PKE S DSGLLEEII
Sbjct: 209 NFHFSHTFLGSSSVNPTAIDSHQTYNSGGPIRTTTQQAVDDSEFFPKEPS-DSGLLEEII 268

Query: 69  HGFFPKSHSNSSTPTTNFN--SDLPFDALKNDNNAANNLEHLD-NLDYPDSIHHILDNFN 128
           HGFFPK  S  S   TN    SD     LK         EH   + DY        +N N
Sbjct: 269 HGFFPKPSSKRSCDETNLAQISDTYDHGLKR----GIKHEHFGLSFDYQGIPQQQFENLN 328

Query: 129 -------APQLGLPHGHPQNL----------ILDDIFHCPELLNLPAPELENA 156
                    Q  LP G+              +LDD+F  PEL N  A  ++NA
Sbjct: 329 GARNELSVSQAALPFGYEMQAMNFQSAGPESVLDDVFQYPELWNAFAARVQNA 376

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g00230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g00230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMT0_CUCSA1.1e-2349.41AP2/ERF domain-containing transcription factor OS=Cucumis sativus GN=Csa_2G34909... [more]
A0A0C5ACN5_BETPL4.8e-0635.26ERF6 protein OS=Betula platyphylla GN=ERF6 PE=2 SV=1[more]
BLAST of Cp4.1LG07g00230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g00230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450620|ref|XP_004143060.1|1.6e-2349.41PREDICTED: ethylene-responsive transcription factor ESR2-like [Cucumis sativus][more]
gi|659087290|ref|XP_008444372.1|1.3e-2046.20PREDICTED: ethylene-responsive transcription factor ESR1 [Cucumis melo][more]
gi|755257701|gb|AJK26926.1|6.8e-0635.26ethylene response factor protein 6 [Betula platyphylla][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g00230.1Cp4.1LG07g00230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g00230CmaCh05G000440Cucurbita maxima (Rimu)cmacpeB793
Cp4.1LG07g00230CmaCh12G000340Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g00230CmoCh05G000510Cucurbita moschata (Rifu)cmocpeB746
Cp4.1LG07g00230Cla022742Watermelon (97103) v1cpewmB789
Cp4.1LG07g00230Csa2G349090Cucumber (Chinese Long) v2cpecuB813
Cp4.1LG07g00230MELO3C010692Melon (DHL92) v3.5.1cpemeB762
Cp4.1LG07g00230ClCG08G017680Watermelon (Charleston Gray)cpewcgB754
Cp4.1LG07g00230CSPI02G17340Wild cucumber (PI 183967)cpecpiB814
Cp4.1LG07g00230MELO3C010692.2Melon (DHL92) v3.6.1cpemedB898
Cp4.1LG07g00230CsaV3_2G024950Cucumber (Chinese Long) v3cpecucB1007
Cp4.1LG07g00230CsGy2G017320Cucumber (Gy14) v2cgybcpeB263
Cp4.1LG07g00230Carg21834Silver-seed gourdcarcpeB0711
Cp4.1LG07g00230Carg20492Silver-seed gourdcarcpeB0889
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g00230Cp4.1LG11g00790Cucurbita pepo (Zucchini)cpecpeB141
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g00230Silver-seed gourdcarcpeB0345
Cp4.1LG07g00230Cucumber (Chinese Long) v3cpecucB1029
Cp4.1LG07g00230Wax gourdcpewgoB1031
Cp4.1LG07g00230Cucurbita pepo (Zucchini)cpecpeB406
Cp4.1LG07g00230Cucumber (Gy14) v1cgycpeB0764
Cp4.1LG07g00230Cucumber (Gy14) v1cgycpeB1045
Cp4.1LG07g00230Cucurbita maxima (Rimu)cmacpeB756
Cp4.1LG07g00230Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g00230Wild cucumber (PI 183967)cpecpiB838
Cp4.1LG07g00230Bottle gourd (USVL1VR-Ls)cpelsiB673
Cp4.1LG07g00230Bottle gourd (USVL1VR-Ls)cpelsiB691
Cp4.1LG07g00230Watermelon (Charleston Gray)cpewcgB739
Cp4.1LG07g00230Watermelon (97103) v1cpewmB796
Cp4.1LG07g00230Cucumber (Gy14) v2cgybcpeB699
Cp4.1LG07g00230Melon (DHL92) v3.6.1cpemedB879