Cp4.1LG06g07840 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g07840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Exonuclease family protein
Location	Cp4.1LG06 : 5702528 .. 5712068 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGCACAAAGAGTAAGGCAAATTGATGGGTTTTGATTCACAGCCTTCCATGGGCGCAGGGCTTTCGAGTTAAAGACTTGCAGGAACTTCTTTCGCCTCAGAAAACAACACTATGCCATCTTCCAGTGTTTCAGCTTTGGATGCCAAAGAAGAGGGCAAGTCGAACGTGGGCAATACGGAGGAGGAGGAGGATAAGCCCAGCTTCTTCGATATCTATGGAACCGATGTATGCATTCTCTTCTTCATCATTCAGCTGCCCATTTGCCTTTTCAAGCCCTTGATTCTTATTGTCGTTAAATCAATAAAGGGGTGTTAGTATTTCCTTGAATTGCATAGGTTTTTTATCCTCCAAGAACTTAATGGCATTGGATAACATAGTGAATTCTGCTTACTTTGATTCCTCTTGTAGGCTAAAGCTGAGGTTCTTTTCAAAACACCAGAATCTAATTCAACTTTAAGTCTGCAAGTGAGTTTGCTTAGTTGCCAAGTTTCTTATAATGTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGATGTTCAAGGGCTTGTAACTTGGGTTCTTGCTGAAGGTTTCATGCCATCGTGGGTTTTTATCAAGGTCAATACCTTTTCAACTTTTACTTGATATCTCTAACTTGAAATTTTGTGTAAGAAGAGACCTGACTATGAACGTTATGTTGTTAGATGGAAATCGAATACGGTGTTGTTTGTTAATTTAAACGTCTACACTTTATGGTGTGATGTATCGTCATAACTCTCATTTAGTTCATAACCCTTTTGGTTCATATTCTCGTTTATTTGGTTCATGCCTATATAAAAGCTTGTCTAGCATTGTTTTGAGGTGTCGAGTCATTACCATTTTGTATTTGTCTAGAAGCAATTGAGAGGGACTTTGTAAAAGAAACTTTGTAGTGTGAGAGTGTGAGAGATACACTTGTAAACACTTTGGTTATAGTGATTGGCTACCACCCGTGGATATAGGGTAACTTCTTCTCTCCGAACCACGTAAATCGTTGTATCTCTTTGTTAGTATATATTTGTGGGTGTGTGAGTGCAATTGATCTTGCTTCCGCTTCCGCTACAACAATTGAGTATCAGAACATTTTGGTTGTGGCATTTGGGTACAACGAGTGGTATCAGAGCATTGAAAGTTGTGGCATTACGGCACAAACACTTCAGATATATGTTAGCTGCCTTCCGTCTTTTTTGCTTAAAGAGAGTTTCCTCCTTTCCTTTCTTCACTTCCATCACATATAATTATTTTTGAACTGAGATTGTTAGTTTGTCTTAGAAAGATTTCTTGGAAGTACTTAAAGAGTTAAATATTTGCAGAATAAACCCCTAATCCCAAAAGTGGTCATGGTTTATCTCCCTGGCCTGGATGCTGCTCTATACATGTCACAGTCCAAGATACTTCCTACATTTAAAAGATTCTGTGGCAGTCCAAGGCCAGTTTTAGCTCTTAGGTACACGTTCGTTTATTGAACGTTGCATTTATTTACGTTTTAGAATGTTTCTGGGATTTACTTATGGTGCAGTCCTTATGTTTTCATTCTTTGTATTTTGGTAGCTGTATTTCAGATAGAATGCAAACAATTGATGCACTTTTGACGTGTAAGGTAAAGAGGAAGAGAGATGCAAACAGTGTAGACTTAAAGAATAAATTGACGTCTGAACAAGGTTTGTGAGCCATTGGCAAACTTAGATTTTGTCTAGCTCTTCGGCTGTTTATTTTCTTCTTGTGTTGTTTTAGTGTTCTTTTTATTCCTTTGTAGGAGTAGGGAATTTTATACTCTATTACCACATTGCTATTATCAATGTTACCATCTTGTTTTCGTCGTTGGGGGTATAACGCGGTGATAAACTTTTATGAGTGTAAAAATGTGCTACAAGGAGTTTAAAGGTGTGTCTACATAATTATGTGGGCATCAAGACCTATATTGTAATAGCCCAAGCCCATCCAACCGATGTGGGATCTATTAGGGTGTGAAAGCCTCTCCCTAGTAGACGCGTTTTAAAAACCTTGAGGGGAAGCCTGAAAAGAAAAGCCCAAAGAAGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAAAACACTGGGCGATGTGCCAGTGAGGAAGCTGATCCTTGAAGGAGGGTGGACATGAGGCGGTGTGTCAGACGTTGGGTCCTGAAGGGGGGTGGATTGGGGAGTCCCACATCGATTCGAGAACGGAACGAGTGCCAGCGAGGATGTTGGGCCCTGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGGAACATTCTTTATAAGGGTGTGGAAACCATTTTCTAGTAGACGTGTTTTAAAAACCTTGAGGGGAAGCCAGAAAGAGAAAGCCCAAAGAGGACAATGTCTGCTAGTGGTGGGCTTGGGCTATTTCAAATGGTATCAGAGCCAGACACCGGGCGATGTGCCAGCGAGGAGACTGATCCCCGAAGGGGGGTGGACATAAGGCGGTGTGCCAGACGCTGAGTCCCGAAGGGGGTGGATTGGGGAGTCCCACATCGATTGGAGAAGGGAACTAGTGCCAGCGAGGACTCTGGGCCCTGAAGGGGGGTGGATTGTGAGAACTCACATCAGTTGGGGAGGAGAACGGAACATTCTTTATAAGGGTGTGGAAACTTTTCCCTAGTAGACGCGTTTTAAAAACCTTGAGAGGAAGCCATAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGTTGTCTCAAATGGTATCAGAGCCAGACACCGGGCAATGTACCAGCAAGGAGGTTGATCTCCGAAGGGGGGTGGATTGGGGAGTCTCACATCAATTAGAGAAGGGAACGAGTGCCAGCGAGGACTTTGGGCCCTGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGCGTTTTAAAACCTTAAGGGGAAGCCCGAAAAAGGAAAAACCCAAATAGGACATTATCTGCTAGCAGTAGGCTTGAGCTGTTACATATACATTCTCCCAAGAAGAAGGCATTTTAGTGGCAATATATTTGTTGAAAGTGGTTTTGATGCCTTTTATCCACTCTTGCATTATGATGAACTAACCTTTTAGTGGCAATATACTTCTTGGACTGTGCAGAAATATTTGGCCCTGAAAAAGACTCACCAATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACACTAACTGCCAAAGAACTGGAAGACAATGGCTATCCATTCAATCAACCAGGTGATTTATCTTTATTACTTAATCGTTTTCGTTAGCTTTGAAAGCTCTATTTTCACCTTTTTCCGAAGTTAACTATCATGGATCCTCTCTCCCACCCTCACTGAAACTTCTTTTCGAGTTAGAAATTTCCGTAACTTAATTATTCATTTGATTCAGGTTTTATCCAAACACTTCCTGCTCCTATGGGATCTTCACCTTATGAAATGTTGGCACTTGACTGTGAAATGGTAAGTCTATTGTTTGTATGAAAGTTGTTTATAAGTGGAATGTTTATGTTACTGTCTACTTAGTCAGCGAAGACTCGATAATTCTCTTTGATTGTAACTCTTGATTTAAGATAATCATTTAATTCTTTTTTGGACTTCTATTAGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGACATGGCAGGACAGGTATGCACTCCATCTCTGCTTCGGTTACGTGCTTTGGCGAAAGCGTTGGATATTTGTACGAGGAAACTTAACTAATGCTTTGAAGACTTTAAATCATGTTCTTGATAGTTTGTGCAACCATCTGTATTTGAGACTTTAAATCCAGTTTGTTGAACTAAAGTTTTAAACCAGCTATGTCTGTTTTGAGTTAACATAGTACTACAATTTTTATTATGTCACAACTATCTGTATTTGATCTTGTTTTTATGTCAATATGTTATACTTCTACGTGTCCGATTTTTTTCATTTATTACCTTTTCCTGATTATTTCAGATCGTCCTCGACAAATTGGTAAAGCCATCAAATGCAATTGTTGATTACAATACGAGGTAAGATCTTCTTGAGCTTTTAGTAGACAATAGACTGGATGTCTCATATAAAACAAATCTCATCAAGAGAAGTTTTATGATGTGAAAATTGTAGCTTCCTGTATTTGATTGATATGATGGTTTATCAAGTCGTTTTAGTTATATTGCATGTTTTACTATTCTTTAAATTACTTACCTTCGACAATGATGCTTGTTTTGTTTTGTTTTTGGATAAGAACGTGTAAGTGTGTAATAGTCCAAGCCTATCGTTAGCAGATATTGTCTTCTTTGGGCTTTCCCTCTCGGGATTCCCTTTAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCATATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGTCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCACCCTCCAATCCACCCCTTTTGAGGTCTAGTGTCCTTGTTGGCACACCGCCTCGTGTCCACCCCCCTTCGAGGCTCAACCTCATTGCTGGCACATCACTCGGTATCTGGCTCTGATACCATTTGTAATAGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTCAAGGTTTTTAAAGCACGTCTGCTAGGGAGAGGTTTCCACATCCATATAAAGAATGTTTCATTCTCCTCCCCAACCGATGTGGGATCTCACAATCCATCCACCCCCCTTCAGGACTAGAGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTAGGACCACCCCCCAATCCACCCCTTTTGAGGCCTAGCGTCCTTGCTGGCACACCGCCTCGTGCCAATCCCCTTCGGGGCTCAGCCTCATCGCTGGCACATTGCCCGGTGTTTAGCTCTGATATCATTTGTAATAGCCCAAATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCAGGCTTCCCTTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTTCACACCCTTATAAAGAGTGCATCGTTTTCCTATCTAAACCGATGTGGCATCTCACAAAAGTGAGTATATTCAAACTAACTAAACAGATACCTTTGGGCTCGGGGTAGAGGAATCCCCCTCCCAAAAAGAACTAACACAAAAAGGCTTTCTATTTTCTAATAATCATGGAAAACTGTAATCACAAAGATCTTTGCATAAAAAAATATAAAACTGTAATTAATGAAGAAATTTTTATGGTTTGAACACTACCAAGAGGTCAAGTTCTGATACTAAAAACAAAAGAAGCCTCAACATTCAACTTGTTCACAAATAGTCTAAGATTCCTTTCCTTTCACCGAAGCCAAAAGAAATCTTTATGGTTGATCTCCACTTAGGTAACTAATGCTTAAAGGGTAGAGAACTTTTGGGTGTACAAGAAGTTCTTAGGTTATCTTGGGTGTTAATGCCAGGCGCCCGACGTGACCGTATGGCTGCTTTTCTCTAATTCACTTGTCTTCATATAGTCTCAAGGCGGAATATACTAATGAAAAACGAGGAGCTAATCTCGTTCGCTTTTTCATGTGTCTTTTAACAGGTTTAGTGGAATTACATGTGAAATGTTAAATGAGGTTACCACTAGTCTAGAAGATGTTCAGGTTCTCTCTTTGACACTGTACTCACTGATGTTATCTACTTGCAGCAATCATTGTTTGAGGGAACTTTCTAATGTATTGGTGGTAAATGTACATTGCAGAAAGATTTTTTGAATCTTGTTCACAAGGAGACTGTTCTAGTTGGTCATTCACTGGAGAATGACCTGATGGCATTGAAGATCTCTCACGATCTCGTCGTTGATACTGCCGTTCTATATAAGCATCCCCGTGGTGGCTCTCATAAATCCGCCCTTCGGATTCTTGCTAAAAGATTTCTTTCCAGGGAGATACAGCAATCTAGCAATGGCCACGATAGTGTCGAAGATGCAAGAGCTACTATGGAACTTGCACTTCTTAAAATTAAACATGGTAAGTGACATTCTACCGTCATTTTGTGATGTCTCACATTGGTTGGGGAGGAGAACAAACCACCATTTATATGGGTGTGGAAACCTTCCCCTAGTAGATGCGTTTAAAAGCCTTGAGGGGAAACCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACTGGACGATGTGTCAGCNACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACTGGACGATGTGTCAGCCTTCTTGCTATTCTCCGAAGGGGGTAGACACGAGGCGGTGTGCTAGTAAGGACGCTGGGCTCCAAAGGGGGGTGGATTTGGGGGCGGTCCCACATCGATTAGAGGAAGGAAAGAGTACCAGCGAGGACGCTGGGCCTCGAAGGAGGGTGGATTATGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGTGTTTTAAAGCCTTGAGGGGGAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGATCTGGGTCGTTAAAAATGGTATCAGAGCCAGACACCGGACTATGTGCTAGCCTTCTCGTTGTTCCCCAAAGGGGGGTAGACACACCTTGAGGGGGAGCCCAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGATCTGGGTCGTTAAAAATGGTATCAGAGCCAGACACCGGACTATGTGCTAGCCTTCTCGTTGTTCCCCAAAGGGGGATAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCCAAAGGGGGGCGGTCTCACATCGATTGGAGGAAGGAAAGAGTGCAAGCGAGGACGCTGGTCCCCAAAGGAGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACGCGTTTTAAAGCTTTGAGGGGAAGCCCGAAAGGGAAAGGCCCAAAGAGGACAATATCTGCTAGCAGTGGATCTGGGTCGTTACGCTTTTGCATTGTAGAGTTCGGTCCTTAGCCTCACGTCGTGTTATAAACTCTGCAGGGTTCTTATTGTATGCCTTTTCTCTTGTTTTCAAACAGGACCGGAGTTCGGATCACCTCCATCGTTAGTCCGAAAGAAGCTACTTAACATACTTGGTGAGAGCGGAAAGATGTCTTCTTTCATTGACGATGTTTCAACCGTGAAGAGATATTCCTCCGAATCATCACATGCATTCCCTGTAACATCTGATGATGAAGCTCTTGCAAAGGCAAAAAAAGAGGTTGGCTAGCTGCTGATTGCATTTGTCTGAAAATTCATTCATAACTCATATCCTAATAGTTTGTTTGTGCCTATTATTGTTTTAGGCAATGAATGAAAGAGTTCACTTCGTTTGGACACAATTTTCTGAATTGAATTCTTACCATAAGAAGCAAGCAGATGATGAAGAAAGATTGAATGTAAAGCTTGCAGAGTTGTTGTCATTAGTTACTTGTGATACAAAATCTGTCAGCAAGAAAAGGAACAGCCCCAAGATCTGTGTCGAACAACGAGAAATTTTGGCTCGTATCGATTCAAGAATCGATAGCCTCTATGCCTCGCTACCTACGAATGCTATGCTTATTATTTGCACGGGTCACGGTGACATAGCACTTGTACAGAGGTATGTGCTTAATGCTTCTGAGATTAGATATCAGTTCCATTTAGTGTTGTATGTTCTTACTGCCTTTGAGTATCAATGTTAAGTTGCTAAGAATCTAGCACGTATTAGAACATGGATGATAAAATTCTGCGGACCACCTTTCTGTGTTACTGGGATTAACACTTTCTGCCTGCTCCATTAGAAGCTTTCATGTAGTAATTACTTTGATCCATGAAAAACTTGTTAGCTGAGTTCAATGTGATTAGTTTCGGGAACGAGTGCCAGCGAGGATGCTGGATCCCGAAGGAGGGTGGATTGTGAGATCCATCCCACTTTGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGCAGACACGTTTTAAAAACCTTGAGGGAAAGCCCGAAAGGGAAAGCCTGAAGAGGACAATATCTGCTAGCGGTGGGGTTGGGCTGTTATAAGCTTGTTCTGTTATCACCTTCCCTTGTGCTATATTAGTGGCCTTCATTTTCATCAATCGAATTATTTTGCTATTTGATGGTGGGAAAGATAATTAGCTTGTTGAAAGGGATATTAGTATTGGTGGGCACAACCGGTTATAACAGTGAGATCCCACGTTGGTTGGAGAGGGGAACGAAGCATTGTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCTTGAGGGGAAACCTGGAAGTGAAAGTCCAACGAAGACAATATCTGCTAGCGGTGAGCTTGGGCTGTTAGAAATGGTATTAGAACTAGACACCGGGTGGTGTGTGCCAGCAAGGACGCTGGCTCCCAAGGGGGGTGGATTGTGAAATCCCACTTGGTCGTAGAGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAGCCTTGAGGAGAATCCCAGAAAGGAAAGCCCAAAGACGATAATATCTACTAGCGGTGGGTTTGAGCTATGTGAGATCCCACATCAGTTGGGGAGGAGAACGAAACATACCTTATAAGAGTGTGGAAACCTCTCCCTAGCAGATACGTTTTAAAAACCTTGAGGGACACCCCGAAAGGGAAAATCCAAAGAGGACAATATCTCCTAGCGGTGGGCTCAGACGGTTACAGGGATACTTTTCTAAACATGAGAGTTATAGTTTAAGACGACCGTGGTAGACATAACTACTTCATCCTCTTTTTTCTTTAGCTACTTATGTGTATATTGACTTATTTCACGAGACAATATATTTGATCTTACAACATCTCGAGTCGATACCTTAGAGTTTGAACATATTTGGATGTCTATGTATATGAATGTAGATTGAGAAAAATGCTAGTGGAGAAAAGTGAAACAAGCATATGCCGTGACAAGGTTGTCAAGATCTTTGAAGAGCTCCATGCCCAAGCTGAGGTAGCTCTCTGTTTTGTATGTATAAAGCATTGATTACTCAAATCCTTCCAAATTATAAGAGTTCAATACATGGGAGTAACACTCAAACATCTTACCTTTTGGTCGTTTATATGGTCGTTTATATATATCTGAACGAGTTGAGCTATTCTCAAATTGGCATATTCT

mRNA sequence

TACGCACAAAGAGTAAGGCAAATTGATGGGTTTTGATTCACAGCCTTCCATGGGCGCAGGGCTTTCGAGTTAAAGACTTGCAGGAACTTCTTTCGCCTCAGAAAACAACACTATGCCATCTTCCAGTGTTTCAGCTTTGGATGCCAAAGAAGAGGGCAAGTCGAACGTGGGCAATACGGAGGAGGAGGAGGATAAGCCCAGCTTCTTCGATATCTATGGAACCGATGCTAAAGCTGAGGTTCTTTTCAAAACACCAGAATCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGGGCTTGTAACTTGGGTTCTTGCTGAAGGTTTCATGCCATCGTGGGTTTTTATCAAGAATAAACCCCTAATCCCAAAAGTGGTCATGGTTTATCTCCCTGGCCTGGATGCTGCTCTATACATGTCACAGTCCAAGATACTTCCTACATTTAAAAGATTCTGTGGCAGTCCAAGGCCAGTTTTAGCTCTTAGCTGTATTTCAGATAGAATGCAAACAATTGATGCACTTTTGACGTGTAAGGTAAAGAGGAAGAGAGATGCAAACAGTGTAGACTTAAAGAATAAATTGACGTCTGAACAAGAAATATTTGGCCCTGAAAAAGACTCACCAATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACACTAACTGCCAAAGAACTGGAAGACAATGGCTATCCATTCAATCAACCAGGTTTTATCCAAACACTTCCTGCTCCTATGGGATCTTCACCTTATGAAATGTTGGCACTTGACTGTGAAATGATCGTCCTCGACAAATTGGTAAAGCCATCAAATGCAATTGTTGATTACAATACGAGGTTTAGTGGAATTACATGTGAAATGTTAAATGAGGTTACCACTAGTCTAGAAGATGTTCAGAAAGATTTTTTGAATCTTGTTCACAAGGAGACTGTTCTAGTTGGTCATTCACTGGAGAATGACCTGATGGCATTGAAGATCTCTCACGATCTCGTCGTTGATACTGCCGTTCTATATAAGCATCCCCGTGGTGGCTCTCATAAATCCGCCCTTCGGATTCTTGCTAAAAGATTTCTTTCCAGGGAGATACAGCAATCTAGCAATGGCCACGATAGACCGGAGTTCGGATCACCTCCATCGTTAGTCCGAAAGAAGCTACTTAACATACTTGGTGAGAGCGGAAAGATGTCTTCTTTCATTGACGATGTTTCAACCGTGAAGAGATATTCCTCCGAATCATCACATGCATTCCCTGTAACATCTGATGATGAAGCTCTTGCAAAGGCAAAAAAAGAGGCAATGAATGAAAGAGTTCACTTCGTTTGGACACAATTTTCTGAATTGAATTCTTACCATAAGAAGCAAGCAGATGATGAAGAAAGATTGAATGTAAAGCTTGCAGAGTTGTTGTCATTAGTTACTTGTGATACAAAATCTGTCAGCAAGAAAAGGAACAGCCCCAAGATCTGTGTCGAACAACGAGAAATTTTGGCTCGTATCGATTCAAGAATCGATAGCCTCTATGCCTCGCTACCTACGAATGCTATGCTTATTATTTGCACGGGTCACGGTGACATAGCACTTGTACAGAGATTGAGAAAAATGCTAGTGGAGAAAAGTGAAACAAGCATATGCCGTGACAAGGTTGTCAAGATCTTTGAAGAGCTCCATGCCCAAGCTGAGGTAGCTCTCTGTTTTGTATGTATAAAGCATTGATTACTCAAATCCTTCCAAATTATAAGAGTTCAATACATGGGAGTAACACTCAAACATCTTACCTTTTGGTCGTTTATATGGTCGTTTATATATATCTGAACGAGTTGAGCTATTCTCAAATTGGCATATTCT

Coding sequence (CDS)

ATGCCATCTTCCAGTGTTTCAGCTTTGGATGCCAAAGAAGAGGGCAAGTCGAACGTGGGCAATACGGAGGAGGAGGAGGATAAGCCCAGCTTCTTCGATATCTATGGAACCGATGCTAAAGCTGAGGTTCTTTTCAAAACACCAGAATCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGGGCTTGTAACTTGGGTTCTTGCTGAAGGTTTCATGCCATCGTGGGTTTTTATCAAGAATAAACCCCTAATCCCAAAAGTGGTCATGGTTTATCTCCCTGGCCTGGATGCTGCTCTATACATGTCACAGTCCAAGATACTTCCTACATTTAAAAGATTCTGTGGCAGTCCAAGGCCAGTTTTAGCTCTTAGCTGTATTTCAGATAGAATGCAAACAATTGATGCACTTTTGACGTGTAAGGTAAAGAGGAAGAGAGATGCAAACAGTGTAGACTTAAAGAATAAATTGACGTCTGAACAAGAAATATTTGGCCCTGAAAAAGACTCACCAATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACACTAACTGCCAAAGAACTGGAAGACAATGGCTATCCATTCAATCAACCAGGTTTTATCCAAACACTTCCTGCTCCTATGGGATCTTCACCTTATGAAATGTTGGCACTTGACTGTGAAATGATCGTCCTCGACAAATTGGTAAAGCCATCAAATGCAATTGTTGATTACAATACGAGGTTTAGTGGAATTACATGTGAAATGTTAAATGAGGTTACCACTAGTCTAGAAGATGTTCAGAAAGATTTTTTGAATCTTGTTCACAAGGAGACTGTTCTAGTTGGTCATTCACTGGAGAATGACCTGATGGCATTGAAGATCTCTCACGATCTCGTCGTTGATACTGCCGTTCTATATAAGCATCCCCGTGGTGGCTCTCATAAATCCGCCCTTCGGATTCTTGCTAAAAGATTTCTTTCCAGGGAGATACAGCAATCTAGCAATGGCCACGATAGACCGGAGTTCGGATCACCTCCATCGTTAGTCCGAAAGAAGCTACTTAACATACTTGGTGAGAGCGGAAAGATGTCTTCTTTCATTGACGATGTTTCAACCGTGAAGAGATATTCCTCCGAATCATCACATGCATTCCCTGTAACATCTGATGATGAAGCTCTTGCAAAGGCAAAAAAAGAGGCAATGAATGAAAGAGTTCACTTCGTTTGGACACAATTTTCTGAATTGAATTCTTACCATAAGAAGCAAGCAGATGATGAAGAAAGATTGAATGTAAAGCTTGCAGAGTTGTTGTCATTAGTTACTTGTGATACAAAATCTGTCAGCAAGAAAAGGAACAGCCCCAAGATCTGTGTCGAACAACGAGAAATTTTGGCTCGTATCGATTCAAGAATCGATAGCCTCTATGCCTCGCTACCTACGAATGCTATGCTTATTATTTGCACGGGTCACGGTGACATAGCACTTGTACAGAGATTGAGAAAAATGCTAGTGGAGAAAAGTGAAACAAGCATATGCCGTGACAAGGTTGTCAAGATCTTTGAAGAGCTCCATGCCCAAGCTGAGGTAGCTCTCTGTTTTGTATGTATAAAGCATTGA

Protein sequence

MPSSSVSALDAKEEGKSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDALLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEMIVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDRPEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSPKICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRDKVVKIFEELHAQAEVALCFVCIKH

Homology

[Close]

BLAST of Cp4.1LG06g07840 vs. Swiss-Prot
Match: SDN5_ARATH (Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2)

HSP 1 Score: 602.1 bits (1551), Expect = 6.1e-171
Identity = 318/559 (56.89%), Postives = 406/559 (72.63%), Query Frame = 1


Query: 16  KSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSW 75
           KSN GN        SFFDIYG +AKAE+ FK+PE+  TL+LQDVQGLVTWVLAEGFMPSW
Sbjct: 23  KSNTGN--------SFFDIYGPEAKAELDFKSPET--TLNLQDVQGLVTWVLAEGFMPSW 82

Query: 76  VFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDA 135
           VFIKNKPLIPKVV++YLPGLDAALY+S SK L + K  CG+P  +LALSC+ D M+TID 
Sbjct: 83  VFIKNKPLIPKVVLLYLPGLDAALYLSHSKTLSSLKSCCGNPMALLALSCVVDEMRTIDT 142

Query: 136 LLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELED 195
           +LTCK ++K+   S      L S  E       S   ++L K++PFPV+YYTL+ KE+E 
Sbjct: 143 ILTCKGRKKKTVTSSVEPPPLVSSPEACNLMGKS--FVELTKDIPFPVSYYTLSQKEMEQ 202

Query: 196 NGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM--------------------IVLDKLVK 255
           NGY F +     TLPAP GS P E++ALDCEM                    ++LDKLV 
Sbjct: 203 NGYTFEKLELTPTLPAPSGSCPPEIVALDCEMCITKEGLELTRVTLVDIQGQVLLDKLVM 262

Query: 256 PSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISH 315
           P+N I DYNTR+SGIT  M+  VTT+L+D+Q++FL LV KET+LVGHSLENDL++LKISH
Sbjct: 263 PTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISH 322

Query: 316 DLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR----------------- 375
           +LV+DTAVLYKHP G S+K+ LRILAK+FL+REIQ+S +GHD                  
Sbjct: 323 NLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKH 382

Query: 376 -PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALAKAKK 435
            P+FGSPP ++RKKLL +L ESGK +S ID+++ VKRY+SESS+A PV+SDDEAL+KA K
Sbjct: 383 GPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVK 442

Query: 436 EAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSPKICV 495
           E  N+R  FVWTQFSELN++ + +ADD ++LN +LAE++SL+TC+ KS  KK N   +  
Sbjct: 443 EVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSN---VSP 502

Query: 496 EQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRDKVVK 537
           E +EIL +++ R+ SLYA+LPTNAM I+CTGHGD ++V R+RKML ++ E    R+K+VK
Sbjct: 503 ETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVK 562

[Close]

BLAST of Cp4.1LG06g07840 vs. Swiss-Prot
Match: YFE9_SCHPO (Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-32
Identity = 144/551 (26.13%), Postives = 237/551 (43.01%), Query Frame = 1


Query: 46  KTPESN--STLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQ 105
           +T E+N    L + D+Q LV W LA+G  PSWV ++NK +I + V++ +PGL+ + +  Q
Sbjct: 90  QTTENNLQKPLKISDLQELVFWCLADGQAPSWVLVRNKQMIHRAVILLVPGLEPSQFGFQ 149

Query: 106 -------SKILP----------------TFKRFCGSPRPVLALSCISDRMQTIDALLTCK 165
                  S +LP                 F R   +  P       S     + + L+ +
Sbjct: 150 PVRGNKHSFLLPNLLNENGPIQLPDFCEVFDRAWPTRSPGDRFRVFSPVNAFLQSPLSNE 209

Query: 166 VKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPF 225
            K+KRD        K T     F    D  +S +   E  +P+    +  +E+       
Sbjct: 210 QKKKRD--------KETRAMASFSKPSDYLMSYESFIEDEYPLHPTVMKGEEV------- 269

Query: 226 NQPGFIQTLPAPMGSSPY--EMLALDCEM--------------------IVLDKLVKPSN 285
            QP           S P   ++LA+DCEM                    ++ D+ VKP +
Sbjct: 270 TQPSGWVASAGDFHSPPINPKILAIDCEMVRTENGLEIARVTIVDMKSEVIYDEFVKPES 329

Query: 286 AIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLV 345
            + DY T++SGIT E L  VTT L DVQ      V   TVL+GHSL +DL  LK +H  +
Sbjct: 330 PVTDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHI 389

Query: 346 VDTAVLYKHPRGGSHKSALRILAKRFLSREIQQS-SNGHDRPEFGSPPSLVRKKLLNILG 405
           +DTA +Y H RG   K +L+ LA ++L REIQ++ + GHD  E     +L    LL +  
Sbjct: 390 IDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSAE----DALACVDLLKLKV 449

Query: 406 ESGKMSSFIDD-----------------VSTVKRYSSESS-------HAFPVTSDDEALA 465
           ++G      +                  +  +  Y +  S        +    +DDE ++
Sbjct: 450 KNGPAFGLFNQDFESIFHRLSRQQPTPLIGAIADYGNPESCIGKAAHKSVSCANDDEVVS 509

Query: 466 KAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSP 522
                ++++  +FVW +F EL       A+   +         +    DT++ S + +  
Sbjct: 510 AV--VSLSDMHNFVWGRFRELEHAAMWNANRNTKQE-------NNSDTDTENDSVEEDQ- 569

[Close]

BLAST of Cp4.1LG06g07840 vs. Swiss-Prot
Match: REXO1_YEAST (RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH70 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-26
Identity = 121/491 (24.64%), Postives = 207/491 (42.16%), Query Frame = 1


Query: 54  LSLQDVQGLVTWVL-AEGFMPSWVFIKNKPLIPKVVMVYLPGL----------------D 113
           + ++DV+ +  ++L AE   P W+ I N+  + K++++++PGL                D
Sbjct: 65  IGIKDVRDMTQYLLQAENNSPKWIDICNRSSLQKMIVLFIPGLQPDDFENGKNTFNEISD 124

Query: 114 AALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDALLTCKVKRKRDANSVDLKNKL 173
                   +I  TF  F     PV+A           ++ +   + +    N +      
Sbjct: 125 DNFKYIPGEIASTFHTF-----PVMAPGSKMTLFSPYNSFINVGLSKMEKINKLK----- 184

Query: 174 TSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFN------QPGFIQTLP 233
                            +L K+    +    L+ ++L  N YP +         ++QT+ 
Sbjct: 185 -----------------ELQKKKKITINDLVLSEQQLVANDYPLDSGDTNFDTDWVQTVD 244

Query: 234 APMGSSPYEMLALDCEM--------------------IVLDKLVKPSNAIVDYNTRFSGI 293
              G S   + ALDCEM                    ++ ++LVKP   IVDY TR+SGI
Sbjct: 245 FTHGGS--HIFALDCEMCLSEQGLVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGI 304

Query: 294 TCEMLN-EVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPR 353
           T E L      +L +VQKD L ++ +  +L+GHSL+NDL  +K+ H LVVDTA++Y H  
Sbjct: 305 TEEKLTVGAKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKA 364

Query: 354 GGSHKSALRILAKRFLSREIQQSSNGHDRPEFG-SPPSLVRKKLLNILGESGKMSSFIDD 413
           G   K +L+ L++ FL++ IQ     HD  E   +   L + K+LN L       +F   
Sbjct: 365 GDPFKPSLKYLSETFLNKSIQNGE--HDSVEDARACLELTKLKILNGL-------AFGIG 424

Query: 414 VSTVKRYSSESSHAFPVTSDDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDE--E 473
           ++T   ++    H F V          K   +N+ +    T+        +   DDE   
Sbjct: 425 INTENLFT--KLHRFEV----------KTVLLNDMIIKNHTEDDSKGQLIRCVEDDETWT 484

Query: 474 RLNVKLAELLSLVTCDTKSVSKKRNSPK------ICVEQREILARIDSRIDSLYASLPTN 492
            ++  L + + L+    K++ + RN  K         +   +L  I   +  LY +    
Sbjct: 485 HIHENLNKDVKLIVGRIKNLERSRNYNKKPRKETPSFDASMVLHDIGQHLTQLYENATPG 505

[Close]

BLAST of Cp4.1LG06g07840 vs. Swiss-Prot
Match: GOR_HUMAN (Putative exonuclease GOR OS=Homo sapiens GN=REXO1L1P PE=5 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-24
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1


Query: 190 AKELEDNGYPFNQPGFIQTLPAPMGSSPYE-MLALDCEM--------------------I 249
           AK+   +G   +  GF++T    +    Y  + ALDCEM                    +
Sbjct: 470 AKQHVRDGRKESLDGFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRV 529

Query: 250 VLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDL 309
           V D  VKP N IVDYNTRFSG+T   + + + +L  VQ   L+    +T+L+GHSLE+DL
Sbjct: 530 VYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDL 589

Query: 310 MALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDRPEFGS 344
           +ALK+ H  VVDTAVL+ H  G  +K +LR LA  +L++ IQ S +GH+  E  S
Sbjct: 590 LALKLIHSTVVDTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDAS 644

[Close]

BLAST of Cp4.1LG06g07840 vs. Swiss-Prot
Match: REXO1_MOUSE (RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-24
Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1


Query: 190  AKELEDNGYPFNQPGFIQTLPAPMGSSPYE-MLALDCEM--------------------I 249
            AK+   +G   N  GF++T    +    +  + ALDCEM                    +
Sbjct: 1021 AKQHVQDGRKENLEGFVRTFQKELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQV 1080

Query: 250  VLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDL 309
            V D  VKP N +VDYNTRFSG+T   L + + +L DVQ   L++   +T+L+GHSLE+DL
Sbjct: 1081 VYDTFVKPDNEVVDYNTRFSGVTEADLVDTSITLRDVQAVLLSMFSADTILIGHSLESDL 1140

Query: 310  MALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDRPEFGS 344
            +ALK+ H  VVDT+VL+ H  G  +K +LR L   +L + IQ + +GH   E  S
Sbjct: 1141 LALKVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAS 1195

[Close]

BLAST of Cp4.1LG06g07840 vs. TrEMBL
Match: A0A061FIQ9_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_035363 PE=4 SV=1)

HSP 1 Score: 710.7 bits (1833), Expect = 1.4e-201
Identity = 366/564 (64.89%), Postives = 440/564 (78.01%), Query Frame = 1


Query: 12  KEEGKSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGF 71
           KE+ +    + EE  +  +F+DIYG  AKAE++FKTPE+NSTL+LQDVQGLVTWVLAEGF
Sbjct: 5   KEKSEGAASSEEENNESSNFYDIYGPQAKAEIVFKTPETNSTLNLQDVQGLVTWVLAEGF 64

Query: 72  MPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQ 131
           MPSWVFIKNKPLIPKVVM+Y+PGLDAALY++QSK L   K+ CG+PR +LALSC+SD MQ
Sbjct: 65  MPSWVFIKNKPLIPKVVMLYVPGLDAALYLAQSKTLSGLKKSCGNPRALLALSCVSDGMQ 124

Query: 132 TIDALLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAK 191
           TIDALLTCKVKRKR+          ++EQE    E D   S +L K+LPFPVTYYTLTAK
Sbjct: 125 TIDALLTCKVKRKRNLIDSVRDTSQSAEQERSISEMD---STELLKDLPFPVTYYTLTAK 184

Query: 192 ELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM--------------------IVLD 251
           ELEDNGY  NQPGF+ TLPA  GSSPY++LALDCEM                    +VLD
Sbjct: 185 ELEDNGYCLNQPGFVSTLPASAGSSPYKILALDCEMCITSEGFELTRVTLVDIKGQVVLD 244

Query: 252 KLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMAL 311
           KLVKPSN I DYNTR+SGIT EML+ VTTSL+DVQ+DFL LV+K+T+L+GHSLENDL+AL
Sbjct: 245 KLVKPSNPITDYNTRYSGITYEMLSGVTTSLQDVQEDFLKLVYKDTILIGHSLENDLLAL 304

Query: 312 KISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR------------- 371
           KISHDLV+DT+VLYKHPRGGS+K+ALR+LAKRFLS EIQQS NGHD              
Sbjct: 305 KISHDLVIDTSVLYKHPRGGSYKTALRVLAKRFLSSEIQQSGNGHDSIEDARAAMELALL 364

Query: 372 -----PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALA 431
                P+FGSPPSL+R+KLL++LGE GK SSFIDD+S VKRY+SESSHA PV SDDEAL 
Sbjct: 365 KIKNGPDFGSPPSLMRRKLLSLLGECGKTSSFIDDISIVKRYASESSHAIPVCSDDEALL 424

Query: 432 KAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSP 491
           KA+KE  N+RVHFVWT FSELNSY +KQA+D+ +LN KLAE++SL+TCD K  + K    
Sbjct: 425 KARKEVKNDRVHFVWTHFSELNSYFRKQAEDDVKLNGKLAEMISLLTCDKKPANWKGIKN 484

Query: 492 KICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRD 538
            +  E +EIL RI++R+ SL+ +LPTN+M IICTGHGDIA+V RLRKML E+SET++ R+
Sbjct: 485 NVSTELKEILTRINARVYSLHTALPTNSMFIICTGHGDIAIVHRLRKMLTEQSETTVSRE 544

[Close]

BLAST of Cp4.1LG06g07840 vs. TrEMBL
Match: F6H092_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15280 PE=4 SV=1)

HSP 1 Score: 708.8 bits (1828), Expect = 5.2e-201
Identity = 363/547 (66.36%), Postives = 433/547 (79.16%), Query Frame = 1


Query: 30  SFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVM 89
           +FFDIYG +AKAEV+FKTP+++STL+LQDVQGLVTWVLAEGFMPSW+FIKNKPLIPKVVM
Sbjct: 26  TFFDIYGPEAKAEVVFKTPDADSTLNLQDVQGLVTWVLAEGFMPSWIFIKNKPLIPKVVM 85

Query: 90  VYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDALLTCKVKRKR-DAN 149
           +Y+PGLDAALYMSQSKIL   K FCG+PR VLALSC+SDRMQTIDALLTCK+KRKR + +
Sbjct: 86  LYVPGLDAALYMSQSKILSGLKEFCGNPRAVLALSCVSDRMQTIDALLTCKLKRKRNEVD 145

Query: 150 SVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIQT 209
           S   K+  TSEQ       ++  S+++ K+LPFP+TYYTLTAKELEDNGY  +QPGF+ T
Sbjct: 146 SALKKHDQTSEQGGCSGGSNNSSSMEVLKDLPFPITYYTLTAKELEDNGYCHDQPGFVST 205

Query: 210 LPAPMGSSPYEMLALDCEM--------------------IVLDKLVKPSNAIVDYNTRFS 269
           LPAP G   YEMLALDCEM                    +VLDKLVKPSN I+DYNTR+S
Sbjct: 206 LPAPSGCRLYEMLALDCEMCVTSEGFELTRISLVDIKGQVVLDKLVKPSNRIIDYNTRYS 265

Query: 270 GITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHP 329
           GITCEMLN VTT L+DVQ+DFL LV+KET+LVGHSLENDL+ALKISHDLV+DTAVLYKHP
Sbjct: 266 GITCEMLNGVTTGLKDVQEDFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHP 325

Query: 330 RGGSHKSALRILAKRFLSREIQQSSNGHDR------------------PEFGSPPSLVRK 389
           RG S+K+ALR+L +RFLSREIQ+S NGHD                   PEFGSPPS +RK
Sbjct: 326 RGASYKTALRVLTRRFLSREIQESRNGHDSIEDARAAMELALLKIRHGPEFGSPPSFMRK 385

Query: 390 KLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALAKAKKEAMNERVHFVWTQ 449
           KLL +L + GK SSFIDD+S V+RY+SE+SHAFPV+SD EAL+KAKKE  N++VHFVWTQ
Sbjct: 386 KLLTVLNDYGKTSSFIDDISIVRRYTSEASHAFPVSSDVEALSKAKKEVKNDKVHFVWTQ 445

Query: 450 FSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSPKICVEQREILARIDSRI 509
           FSELNSY KKQA+D ++LN KLAE++SL+TC+ KS + K     +  E ++IL  ID+RI
Sbjct: 446 FSELNSYFKKQAEDTDKLNAKLAEMISLLTCNKKSTTPKGIKFSVTSELKDILTCIDTRI 505

Query: 510 DSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRDKVVKIFEELHAQAEVAL 538
            SLY  LP N MLIICTGHGD A+V RLRKML E+ ET++ R+K+VK+ EEL AQAEVAL
Sbjct: 506 RSLYHELPANTMLIICTGHGDTAIVHRLRKMLREQIETTVSREKLVKVLEELQAQAEVAL 565

[Close]

BLAST of Cp4.1LG06g07840 vs. TrEMBL
Match: B9S2M9_RICCO (Rnase h, putative OS=Ricinus communis GN=RCOM_0559410 PE=4 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 2.2e-199
Identity = 366/577 (63.43%), Postives = 439/577 (76.08%), Query Frame = 1


Query: 2   PSSSVSALDAKEEGKS--NVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDV 61
           P   + A+ + +E  S  N  N        ++FDIYG  AKAE++FK PE+N TL+L+DV
Sbjct: 8   PKHEIQAVSSSKEDDSTDNCNNITN-----NYFDIYGPQAKAEIVFKMPEANQTLNLEDV 67

Query: 62  QGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRP 121
           QGLVTWVLAEGFMPSWVFIKNKPLIPKV M+++PGLDA+LY+S SK+L +FK +C +PR 
Sbjct: 68  QGLVTWVLAEGFMPSWVFIKNKPLIPKVAMLFIPGLDASLYLSHSKLLASFKEYCSNPRA 127

Query: 122 VLALSCISDRMQTIDALLTCKVKRKRD-ANSVDLKNKLTSEQEIFGPEKDSPISIKLPKE 181
           +LALSC+SD MQT+DALLTCK+KRKRD A+S   K+  TSEQ           SI+L K+
Sbjct: 128 LLALSCVSDVMQTVDALLTCKMKRKRDRADSFSRKSMQTSEQGDLS-------SIELMKD 187

Query: 182 LPFPVTYYTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM----------- 241
           LPFP TYYTLT K+LE+N YP +QPGF+ TLPAP GSS Y+MLALDCEM           
Sbjct: 188 LPFPPTYYTLTTKQLEENDYPISQPGFVSTLPAPSGSSAYDMLALDCEMCITKEGFELTR 247

Query: 242 ---------IVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETV 301
                    +VLDKLVKPSN I+DYNTRFSGITCEMLN V TSL+DVQ+DFL LVHKET+
Sbjct: 248 VTVVDVKGQVVLDKLVKPSNPIIDYNTRFSGITCEMLNGVPTSLKDVQEDFLKLVHKETL 307

Query: 302 LVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR 361
           L+GHSLENDL ALKISH LV+DTAVLYKHPRGGS+K+ALR+LAK+FLSREIQQS +GHD 
Sbjct: 308 LIGHSLENDLSALKISHGLVIDTAVLYKHPRGGSYKTALRVLAKKFLSREIQQSGDGHDS 367

Query: 362 ------------------PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESS 421
                             P+FGSPPS VR+KLL IL ESGK SS IDDVS VKRY+SESS
Sbjct: 368 IEDARAAMELALLKIKNGPDFGSPPSFVRRKLLTILSESGKASSVIDDVSIVKRYASESS 427

Query: 422 HAFPVTSDDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVT 481
           HAFPV+SDD+AL+KA KE  N+RVHFVWTQ SELNSY KKQADDE ++N KLAE++SL+T
Sbjct: 428 HAFPVSSDDDALSKALKEVKNDRVHFVWTQLSELNSYFKKQADDEGKVNAKLAEMISLLT 487

Query: 482 CDTKSVSKKRNSPKICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRK 538
           C  KS + K     +  E +EIL R+D+R+  LY++LPTN MLIICTGHGD A+V+RLRK
Sbjct: 488 CQKKSANTKGVRCSMTSELKEILIRMDARVRCLYSALPTNTMLIICTGHGDTAIVRRLRK 547

[Close]

BLAST of Cp4.1LG06g07840 vs. TrEMBL
Match: A0A0D2RHL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083600 PE=4 SV=1)

HSP 1 Score: 700.7 bits (1807), Expect = 1.4e-198
Identity = 360/553 (65.10%), Postives = 435/553 (78.66%), Query Frame = 1


Query: 23  EEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKP 82
           EE+++  ++FDIYG  AKAE++FKTPE++STL+LQDVQGLVTWVLA+GFMPSWVFIKNKP
Sbjct: 15  EEKKESSNYFDIYGPQAKAELVFKTPEADSTLNLQDVQGLVTWVLADGFMPSWVFIKNKP 74

Query: 83  LIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDALLTCKVK 142
           LIPKVVM+Y+PGLDAALY++QS  L  FK+ CG+PR +LALSC+SD MQTIDALLTCKVK
Sbjct: 75  LIPKVVMLYVPGLDAALYIAQSMKLSGFKQSCGNPRALLALSCVSDGMQTIDALLTCKVK 134

Query: 143 RKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQ 202
           RKR+          ++EQE      DS    ++ K++PFP++YYTLTAKELEDNG+ ++Q
Sbjct: 135 RKRNVIDSARDVSQSAEQETSISSMDSA---EILKDIPFPISYYTLTAKELEDNGFCYDQ 194

Query: 203 PGFIQTLPAPMGSSPYEMLALDCEM--------------------IVLDKLVKPSNAIVD 262
           PGFI T PAP GSSPYEMLALDCEM                    +VLDKLV PSN I D
Sbjct: 195 PGFIPTRPAPDGSSPYEMLALDCEMCITSEGFELTRVTLVDIKGQVVLDKLVNPSNPITD 254

Query: 263 YNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTA 322
           YNTRFSGIT EML+ VTT+L++VQ+DFL LVHK+T+LVGHSLENDL+ALKISHDL++DT+
Sbjct: 255 YNTRFSGITYEMLSGVTTTLQNVQEDFLMLVHKDTILVGHSLENDLLALKISHDLIIDTS 314

Query: 323 VLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR------------------PEFGSP 382
           VLYKHPRGGS+KSALR+LAKRFLSREIQQS +GHD                   P+FGSP
Sbjct: 315 VLYKHPRGGSYKSALRVLAKRFLSREIQQSGSGHDSIEDARAAMDLALLKIRNGPDFGSP 374

Query: 383 PSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALAKAKKEAMNERV 442
           PS +R+KLL +LGE GK SSFIDD+S VKRY+SESSHA PV SDDEAL KA+KE  N+RV
Sbjct: 375 PSFMRRKLLTLLGECGKTSSFIDDISIVKRYASESSHAIPVCSDDEALLKARKEVKNDRV 434

Query: 443 HFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSPKICVEQREILA 502
           HFVWTQFSELNSY +KQA+D+ +LN KLAE++SL+TCD K   +K     I  E +EIL 
Sbjct: 435 HFVWTQFSELNSYFRKQAEDDVKLNGKLAEMISLLTCDKKPAKRKGVKYNISTELKEILT 494

Query: 503 RIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRDKVVKIFEELHA 538
           RID+R+ SL+ +LPTN+M IICTGHGDIA+V RLRKML E+SET I R+K++K+ EEL A
Sbjct: 495 RIDARVRSLHTALPTNSMFIICTGHGDIAIVHRLRKMLTEQSETMIPREKLIKVLEELQA 554

[Close]

BLAST of Cp4.1LG06g07840 vs. TrEMBL
Match: K7M768_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G119200 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 3.1e-198
Identity = 367/570 (64.39%), Postives = 431/570 (75.61%), Query Frame = 1


Query: 13  EEGKSNVGNTEEEEDKPS------FFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWV 72
           E     +   EEEED  S      F+DIYG + KA+V+F +PE NSTL+L DVQGLVTWV
Sbjct: 5   EAENKTLRGAEEEEDSTSTKKRGKFYDIYGPEGKADVVFNSPEDNSTLNLSDVQGLVTWV 64

Query: 73  LAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCI 132
           L EGFMPSWVFIKNKPLIPKVVM+Y+PGLDAAL++SQSK+LP  K FCG PR VLALSC+
Sbjct: 65  LGEGFMPSWVFIKNKPLIPKVVMLYVPGLDAALFLSQSKMLPRLKIFCGKPRAVLALSCV 124

Query: 133 SDRMQTIDALLTCKVKRKRDANS-VDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTY 192
           SD MQTIDALLTCK+KRKRD NS +  K+ LTS+Q       DS    +L K++PFPVTY
Sbjct: 125 SDGMQTIDALLTCKMKRKRDENSSIMRKSALTSQQ-------DSLSFKELTKDIPFPVTY 184

Query: 193 YTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM------------------ 252
           YTLT KELE+NGY  N+PGF+ TLPAP GS  Y+MLALDCEM                  
Sbjct: 185 YTLTEKELEENGYSVNKPGFLSTLPAPSGSPFYDMLALDCEMCITSEGFELSRITLVDVK 244

Query: 253 --IVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLE 312
             +++DKLVKPSNAI DYNTR+SGIT EML+ VTTSL D+Q++FL LVHKET+LVGHSLE
Sbjct: 245 GQVLIDKLVKPSNAITDYNTRYSGITSEMLDGVTTSLRDIQEEFLKLVHKETILVGHSLE 304

Query: 313 NDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR------- 372
           NDL+ALKISHDLV+DTAVLYKHPRG +HK+ALR L KRFLSREIQQS NGHD        
Sbjct: 305 NDLLALKISHDLVIDTAVLYKHPRGSTHKNALRFLTKRFLSREIQQSGNGHDSIEDARAT 364

Query: 373 -----------PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTS 432
                      P FGSPPS  RKKLL+IL ESGK SS IDD+S VKRY+SESSHA PVTS
Sbjct: 365 MELALLKIRNGPNFGSPPSFTRKKLLSILSESGKTSSLIDDISVVKRYASESSHAIPVTS 424

Query: 433 DDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVS 492
           DD ALAKA KE  N +VHF+WTQFSEL+SY KKQA+D ERLN +LAE+L+L TC      
Sbjct: 425 DDVALAKANKEVKNGKVHFIWTQFSELHSYLKKQAEDSERLNRRLAEMLALQTCQNNFTK 484

Query: 493 KKRNSPKICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSE 538
            K    K   E +EILAR+D+RI +LY SLPTNAM+IICTGHGD A+V+RLRKML E++E
Sbjct: 485 GKDFKLKASAELKEILARMDARIHNLYLSLPTNAMMIICTGHGDTAIVRRLRKMLAEQNE 544

[Close]

BLAST of Cp4.1LG06g07840 vs. TAIR10
Match: AT5G25800.1 (AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 602.1 bits (1551), Expect = 3.5e-172
Identity = 318/559 (56.89%), Postives = 406/559 (72.63%), Query Frame = 1


Query: 16  KSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSW 75
           KSN GN        SFFDIYG +AKAE+ FK+PE+  TL+LQDVQGLVTWVLAEGFMPSW
Sbjct: 23  KSNTGN--------SFFDIYGPEAKAELDFKSPET--TLNLQDVQGLVTWVLAEGFMPSW 82

Query: 76  VFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDA 135
           VFIKNKPLIPKVV++YLPGLDAALY+S SK L + K  CG+P  +LALSC+ D M+TID 
Sbjct: 83  VFIKNKPLIPKVVLLYLPGLDAALYLSHSKTLSSLKSCCGNPMALLALSCVVDEMRTIDT 142

Query: 136 LLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELED 195
           +LTCK ++K+   S      L S  E       S   ++L K++PFPV+YYTL+ KE+E 
Sbjct: 143 ILTCKGRKKKTVTSSVEPPPLVSSPEACNLMGKS--FVELTKDIPFPVSYYTLSQKEMEQ 202

Query: 196 NGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM--------------------IVLDKLVK 255
           NGY F +     TLPAP GS P E++ALDCEM                    ++LDKLV 
Sbjct: 203 NGYTFEKLELTPTLPAPSGSCPPEIVALDCEMCITKEGLELTRVTLVDIQGQVLLDKLVM 262

Query: 256 PSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISH 315
           P+N I DYNTR+SGIT  M+  VTT+L+D+Q++FL LV KET+LVGHSLENDL++LKISH
Sbjct: 263 PTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISH 322

Query: 316 DLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR----------------- 375
           +LV+DTAVLYKHP G S+K+ LRILAK+FL+REIQ+S +GHD                  
Sbjct: 323 NLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKH 382

Query: 376 -PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALAKAKK 435
            P+FGSPP ++RKKLL +L ESGK +S ID+++ VKRY+SESS+A PV+SDDEAL+KA K
Sbjct: 383 GPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVK 442

Query: 436 EAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSPKICV 495
           E  N+R  FVWTQFSELN++ + +ADD ++LN +LAE++SL+TC+ KS  KK N   +  
Sbjct: 443 EVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSN---VSP 502

Query: 496 EQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRDKVVK 537
           E +EIL +++ R+ SLYA+LPTNAM I+CTGHGD ++V R+RKML ++ E    R+K+VK
Sbjct: 503 ETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVK 562

[Close]

BLAST of Cp4.1LG06g07840 vs. TAIR10
Match: AT5G05540.1 (AT5G05540.1 small RNA degrading nuclease 2)

HSP 1 Score: 92.8 bits (229), Expect = 6.8e-19
Identity = 75/263 (28.52%), Postives = 121/263 (46.01%), Query Frame = 1


Query: 109 TFKRFCGSPRPVLALSCISD----RMQTIDALLTCKVKRKRDANSVDLKNKLTSEQEIFG 168
           T+K F       L  S +SD    R   + A LT  +K+K D     L   L  + ++F 
Sbjct: 31  TWKEFLDFYDKQLGSSSLSDPSKRRKDDLVAFLTT-LKKKEDLQL--LAKSLKLDNDVFE 90

Query: 169 PEKDSPISIKLPKELPFPVTYYTLTAKELE-DNGYPFNQPGFIQTLPAPMGSSP--YEML 228
             K   +     + L       TLT  E   D  +P N   +++T        P   EM+
Sbjct: 91  KFKKKSLDETAEQRL----VRMTLTHDEYPLDYLFPSNAEDWVRTGLGKKKMEPTKIEMI 150

Query: 229 ALDCEMI---------------------VLDKLVKPSNAIVDYNTRFSGITCEMLNEVTT 288
           A+DCEM+                     +LD+ VKP+  +VDY T  +G+T + L + T 
Sbjct: 151 AIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKATI 210

Query: 289 SLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSH------K 338
           S+ D+Q+  L  + ++T+LVG SL +DL  LK+ H  V+DT++++K+   G+       +
Sbjct: 211 SVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRLKR 270

[Close]

BLAST of Cp4.1LG06g07840 vs. TAIR10
Match: AT3G50100.1 (AT3G50100.1 small RNA degrading nuclease 1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-17
Identity = 62/218 (28.44%), Postives = 104/218 (47.71%), Query Frame = 1


Query: 144 KRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQP 203
           K  AN + ++N     Q+   PE+   + ++L  E P         +  L+ +  P+++ 
Sbjct: 74  KCHANHLLIENLKQESQDEDTPEQ---MLVRLTVEHP---------SYSLDYSFKPYSED 133

Query: 204 GFIQTLPAPMGS--SPYEMLALDCEMI---------------------VLDKLVKPSNAI 263
            F+  +   M        M+A+DCEM+                     +LD+ VKP+  +
Sbjct: 134 WFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPV 193

Query: 264 VDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVD 323
           VDY T  +GIT E +   + S+ D+Q+     +   T+LVGHSL  DL  LKI H  V+D
Sbjct: 194 VDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVID 253

Query: 324 TAVLYKHPRGGS-HKSALRILAKRFLSREIQQSSNGHD 338
           TA+++K+P      + +L  L K  L  E++++   HD
Sbjct: 254 TALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHD 279

[Close]

BLAST of Cp4.1LG06g07840 vs. TAIR10
Match: AT5G67240.1 (AT5G67240.1 small RNA degrading nuclease 3)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-16
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 1


Query: 220 MLALDCEMI---------------------VLDKLVKPSNAIVDYNTRFSGITCEMLNEV 279
           ML++DCEM+                     VLDK VKP   ++DY T  +G+T E L   
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204

Query: 280 TTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKH-PRGGSHKSAL 338
           T S+ D+QK     +   T+LVGH L NDL  L+I H  V+DT+ +++      + + +L
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQRPSL 264

[Close]

BLAST of Cp4.1LG06g07840 vs. TAIR10
Match: AT3G50090.1 (AT3G50090.1 Exonuclease family protein)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-10
Identity = 40/142 (28.17%), Postives = 65/142 (45.77%), Query Frame = 1


Query: 217 PYEMLALDCEMI---------------------VLDKLVKPSNAIVDYNTRFSGITCEML 276
           P +MLALDCEM+                     +LD+ VKP   +VDY T  +G+T E +
Sbjct: 72  PNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDV 131

Query: 277 NEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGS-HK 336
            + T SL D+Q+     +    +L             I H +V+DT++++K+P      +
Sbjct: 132 QKATLSLVDIQEKLRPFLSAGAIL-------------IDHPIVIDTSLVFKYPNSRKLRR 191

[Close]

BLAST of Cp4.1LG06g07840 vs. NCBI nr
Match: gi|659133351|ref|XP_008466693.1| (PREDICTED: small RNA degrading nuclease 5 [Cucumis melo])

HSP 1 Score: 914.8 bits (2363), Expect = 6.8e-263
Identity = 473/575 (82.26%), Postives = 504/575 (87.65%), Query Frame = 1


Query: 1   MPSSSVSALDAKEEGKSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQ 60
           MPSSSVS LD+++EGKSNVG T+E   KP FFDIYG DAKAEVLFKTPESNSTLSLQDVQ
Sbjct: 1   MPSSSVSGLDSEDEGKSNVGKTQE---KPCFFDIYGADAKAEVLFKTPESNSTLSLQDVQ 60

Query: 61  GLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPV 120
            LVTWVLAEGFMP WVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFK+FCGSPR V
Sbjct: 61  QLVTWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKFCGSPRAV 120

Query: 121 LALSCISDRMQTIDALLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELP 180
           LALSCISDRMQTIDALLTCKVKRKRDAN VDL NKLTSE EI G EK++PISI+LPKELP
Sbjct: 121 LALSCISDRMQTIDALLTCKVKRKRDANKVDLNNKLTSEPEISGLEKEAPISIQLPKELP 180

Query: 181 FPVTYYTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM------------- 240
           FPVTYYTLTAK+LEDNGYPFNQPGFIQTLPAP G SP EMLALDCEM             
Sbjct: 181 FPVTYYTLTAKQLEDNGYPFNQPGFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRIT 240

Query: 241 -------IVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLV 300
                  ++LDKLVKPSNAIVDYNTRFSGITCEML+ VTTSLEDVQ+DFLNLVHKETVLV
Sbjct: 241 LVDMEGQVLLDKLVKPSNAIVDYNTRFSGITCEMLSGVTTSLEDVQRDFLNLVHKETVLV 300

Query: 301 GHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR-- 360
           GHSLENDL+ALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQS NGHD   
Sbjct: 301 GHSLENDLIALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIE 360

Query: 361 ----------------PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHA 420
                           P+FGSPPSL+RKKLLNILGE GK SSFIDD+STVKRYSSESSHA
Sbjct: 361 DARATMELALLKIKHGPDFGSPPSLIRKKLLNILGECGKTSSFIDDISTVKRYSSESSHA 420

Query: 421 FPVTSDDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCD 480
           FPVTSDDEAL++AKKEAMNE+VHF+WTQFSELNSYHKKQ DDEE+LNVKLAELLSL+TCD
Sbjct: 421 FPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCD 480

Query: 481 TKSVSKKRNSPKICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKML 538
           TKSV+KKRN  KI VE +EILAR+DSRI+ LY SLPTNAMLIICTGHGDIALVQRLRKML
Sbjct: 481 TKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDIALVQRLRKML 540

[Close]

BLAST of Cp4.1LG06g07840 vs. NCBI nr
Match: gi|449458093|ref|XP_004146782.1| (PREDICTED: small RNA degrading nuclease 5 [Cucumis sativus])

HSP 1 Score: 907.5 bits (2344), Expect = 1.1e-260
Identity = 469/575 (81.57%), Postives = 502/575 (87.30%), Query Frame = 1


Query: 1   MPSSSVSALDAKEEGKSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQ 60
           MPSSSVS LD++++G+SNVG T+E   KPSFFDIYG DAKAE+LFKTPESNSTLSLQDVQ
Sbjct: 1   MPSSSVSGLDSEDDGQSNVGKTQE---KPSFFDIYGADAKAEILFKTPESNSTLSLQDVQ 60

Query: 61  GLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPV 120
            LV WVLAEGFMP WVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFK+FCGSPR V
Sbjct: 61  ELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKFCGSPRAV 120

Query: 121 LALSCISDRMQTIDALLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELP 180
           LALSCISDRMQTIDALLTCKVKRKRDAN VDLKNKLTSE EI G EK++PISIKLPKELP
Sbjct: 121 LALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELP 180

Query: 181 FPVTYYTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM------------- 240
           FPVTYYTLTAK LEDNGYPFNQPGFIQTLPAP G SP EMLALDCEM             
Sbjct: 181 FPVTYYTLTAKALEDNGYPFNQPGFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRIT 240

Query: 241 -------IVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLV 300
                  ++LDKLVKPSNAIVDYNTR+SGITCEML+ VTTSLEDVQ+ FLNLVHKETVLV
Sbjct: 241 LVDMEGRVLLDKLVKPSNAIVDYNTRYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLV 300

Query: 301 GHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR-- 360
           GHSLENDLMAL+ISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQS NGHD   
Sbjct: 301 GHSLENDLMALRISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIE 360

Query: 361 ----------------PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHA 420
                           P+FGSPPSL+RKKLLNILGESGK SSFIDD++TVKRY SESSHA
Sbjct: 361 DARATMELALLKIKHGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHA 420

Query: 421 FPVTSDDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCD 480
           FPVTSDDEAL++AKKEAMNE+VHF+WTQFSELNSYHKKQ DDEE+LNVKLAELLSL+TCD
Sbjct: 421 FPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCD 480

Query: 481 TKSVSKKRNSPKICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKML 538
           TKSV+KKRN  KI VE +EILAR+DSRI+ LY SLPTNAMLIICTGHGDI LVQRLRKML
Sbjct: 481 TKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKML 540

[Close]

BLAST of Cp4.1LG06g07840 vs. NCBI nr
Match: gi|1009175078|ref|XP_015868684.1| (PREDICTED: small RNA degrading nuclease 5 [Ziziphus jujuba])

HSP 1 Score: 712.6 bits (1838), Expect = 5.2e-202
Identity = 372/572 (65.03%), Postives = 436/572 (76.22%), Query Frame = 1


Query: 7   SALDAKEEGKSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWV 66
           SA D          +    +   SFFDIYG   KA+++ KTPES STL+LQDVQGL +WV
Sbjct: 11  SAFDEDISDGPTASSASTVKRSSSFFDIYGPQGKADIVLKTPESGSTLNLQDVQGLASWV 70

Query: 67  LAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCI 126
           LAEGFMPSWVFIKNKPLIPKVVM+YLPGLDAALY+SQSK++P+ + FCG+PR VLALSC+
Sbjct: 71  LAEGFMPSWVFIKNKPLIPKVVMLYLPGLDAALYLSQSKLIPSLREFCGNPRAVLALSCV 130

Query: 127 SDRMQTIDALLTCKVKRKRD-ANSVDLKNKLTSEQEI--FGPEKDSPISIKLPKELPFPV 186
           SD MQT+DALLTCK+KRKR+ +NSV     LT++QE   FG  K S       K+LPFP+
Sbjct: 131 SDGMQTVDALLTCKLKRKREQSNSVSRNCNLTTKQEKCGFGTNKLSM------KDLPFPI 190

Query: 187 TYYTLTAKELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM---------------- 246
           TYYTLT KELEDNGY  NQPGF+ TLPAP GSSPYEMLALDCEM                
Sbjct: 191 TYYTLTEKELEDNGYCLNQPGFVSTLPAPSGSSPYEMLALDCEMCITNEGFELTRITLVD 250

Query: 247 ----IVLDKLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHS 306
               +VLDKLVKPSN+I DYNTRFSGIT EMLN VTTSL+D+Q DF+ LV+KET+LVGHS
Sbjct: 251 VQGQVVLDKLVKPSNSITDYNTRFSGITSEMLNGVTTSLKDIQGDFIKLVYKETILVGHS 310

Query: 307 LENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR----- 366
           +ENDL+ALKISH+LV+DTAVLYKHPRGGSHK+ALRILAK+FLS+EIQQS NGHD      
Sbjct: 311 VENDLLALKISHNLVIDTAVLYKHPRGGSHKTALRILAKKFLSKEIQQSENGHDSIEDAR 370

Query: 367 -------------PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPV 426
                        P+FGSPPSLVRKKLL +L ESGK SS IDDVS VKRY+SESSH FPV
Sbjct: 371 AAMELALLKINHGPDFGSPPSLVRKKLLTVLSESGKTSSIIDDVSIVKRYASESSHVFPV 430

Query: 427 TSDDEALAKAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKS 486
            SDDEAL+KA+KE  NE+VHFVWTQFSELNSY KK+  D E+ N KLAE++SL+TC  KS
Sbjct: 431 ASDDEALSKARKEVKNEKVHFVWTQFSELNSYFKKEVQDAEKFNGKLAEMISLLTCHNKS 490

Query: 487 VSKKRNSPKICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEK 538
            +KK        E +EIL R+D+RI SLY++LPTN MLIICTGHG+ ++V RLRKML + 
Sbjct: 491 GNKKGIEFNASSEVKEILKRMDARIRSLYSALPTNTMLIICTGHGNTSVVYRLRKMLTDH 550

[Close]

BLAST of Cp4.1LG06g07840 vs. NCBI nr
Match: gi|590600012|ref|XP_007019342.1| (Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 710.7 bits (1833), Expect = 2.0e-201
Identity = 366/564 (64.89%), Postives = 440/564 (78.01%), Query Frame = 1


Query: 12  KEEGKSNVGNTEEEEDKPSFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGF 71
           KE+ +    + EE  +  +F+DIYG  AKAE++FKTPE+NSTL+LQDVQGLVTWVLAEGF
Sbjct: 5   KEKSEGAASSEEENNESSNFYDIYGPQAKAEIVFKTPETNSTLNLQDVQGLVTWVLAEGF 64

Query: 72  MPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQ 131
           MPSWVFIKNKPLIPKVVM+Y+PGLDAALY++QSK L   K+ CG+PR +LALSC+SD MQ
Sbjct: 65  MPSWVFIKNKPLIPKVVMLYVPGLDAALYLAQSKTLSGLKKSCGNPRALLALSCVSDGMQ 124

Query: 132 TIDALLTCKVKRKRDANSVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAK 191
           TIDALLTCKVKRKR+          ++EQE    E D   S +L K+LPFPVTYYTLTAK
Sbjct: 125 TIDALLTCKVKRKRNLIDSVRDTSQSAEQERSISEMD---STELLKDLPFPVTYYTLTAK 184

Query: 192 ELEDNGYPFNQPGFIQTLPAPMGSSPYEMLALDCEM--------------------IVLD 251
           ELEDNGY  NQPGF+ TLPA  GSSPY++LALDCEM                    +VLD
Sbjct: 185 ELEDNGYCLNQPGFVSTLPASAGSSPYKILALDCEMCITSEGFELTRVTLVDIKGQVVLD 244

Query: 252 KLVKPSNAIVDYNTRFSGITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMAL 311
           KLVKPSN I DYNTR+SGIT EML+ VTTSL+DVQ+DFL LV+K+T+L+GHSLENDL+AL
Sbjct: 245 KLVKPSNPITDYNTRYSGITYEMLSGVTTSLQDVQEDFLKLVYKDTILIGHSLENDLLAL 304

Query: 312 KISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDR------------- 371
           KISHDLV+DT+VLYKHPRGGS+K+ALR+LAKRFLS EIQQS NGHD              
Sbjct: 305 KISHDLVIDTSVLYKHPRGGSYKTALRVLAKRFLSSEIQQSGNGHDSIEDARAAMELALL 364

Query: 372 -----PEFGSPPSLVRKKLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALA 431
                P+FGSPPSL+R+KLL++LGE GK SSFIDD+S VKRY+SESSHA PV SDDEAL 
Sbjct: 365 KIKNGPDFGSPPSLMRRKLLSLLGECGKTSSFIDDISIVKRYASESSHAIPVCSDDEALL 424

Query: 432 KAKKEAMNERVHFVWTQFSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSP 491
           KA+KE  N+RVHFVWT FSELNSY +KQA+D+ +LN KLAE++SL+TCD K  + K    
Sbjct: 425 KARKEVKNDRVHFVWTHFSELNSYFRKQAEDDVKLNGKLAEMISLLTCDKKPANWKGIKN 484

Query: 492 KICVEQREILARIDSRIDSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRD 538
            +  E +EIL RI++R+ SL+ +LPTN+M IICTGHGDIA+V RLRKML E+SET++ R+
Sbjct: 485 NVSTELKEILTRINARVYSLHTALPTNSMFIICTGHGDIAIVHRLRKMLTEQSETTVSRE 544

[Close]

BLAST of Cp4.1LG06g07840 vs. NCBI nr
Match: gi|225457811|ref|XP_002278571.1| (PREDICTED: small RNA degrading nuclease 5 [Vitis vinifera])

HSP 1 Score: 708.8 bits (1828), Expect = 7.5e-201
Identity = 363/547 (66.36%), Postives = 433/547 (79.16%), Query Frame = 1


Query: 30  SFFDIYGTDAKAEVLFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVM 89
           +FFDIYG +AKAEV+FKTP+++STL+LQDVQGLVTWVLAEGFMPSW+FIKNKPLIPKVVM
Sbjct: 26  TFFDIYGPEAKAEVVFKTPDADSTLNLQDVQGLVTWVLAEGFMPSWIFIKNKPLIPKVVM 85

Query: 90  VYLPGLDAALYMSQSKILPTFKRFCGSPRPVLALSCISDRMQTIDALLTCKVKRKR-DAN 149
           +Y+PGLDAALYMSQSKIL   K FCG+PR VLALSC+SDRMQTIDALLTCK+KRKR + +
Sbjct: 86  LYVPGLDAALYMSQSKILSGLKEFCGNPRAVLALSCVSDRMQTIDALLTCKLKRKRNEVD 145

Query: 150 SVDLKNKLTSEQEIFGPEKDSPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIQT 209
           S   K+  TSEQ       ++  S+++ K+LPFP+TYYTLTAKELEDNGY  +QPGF+ T
Sbjct: 146 SALKKHDQTSEQGGCSGGSNNSSSMEVLKDLPFPITYYTLTAKELEDNGYCHDQPGFVST 205

Query: 210 LPAPMGSSPYEMLALDCEM--------------------IVLDKLVKPSNAIVDYNTRFS 269
           LPAP G   YEMLALDCEM                    +VLDKLVKPSN I+DYNTR+S
Sbjct: 206 LPAPSGCRLYEMLALDCEMCVTSEGFELTRISLVDIKGQVVLDKLVKPSNRIIDYNTRYS 265

Query: 270 GITCEMLNEVTTSLEDVQKDFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHP 329
           GITCEMLN VTT L+DVQ+DFL LV+KET+LVGHSLENDL+ALKISHDLV+DTAVLYKHP
Sbjct: 266 GITCEMLNGVTTGLKDVQEDFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHP 325

Query: 330 RGGSHKSALRILAKRFLSREIQQSSNGHDR------------------PEFGSPPSLVRK 389
           RG S+K+ALR+L +RFLSREIQ+S NGHD                   PEFGSPPS +RK
Sbjct: 326 RGASYKTALRVLTRRFLSREIQESRNGHDSIEDARAAMELALLKIRHGPEFGSPPSFMRK 385

Query: 390 KLLNILGESGKMSSFIDDVSTVKRYSSESSHAFPVTSDDEALAKAKKEAMNERVHFVWTQ 449
           KLL +L + GK SSFIDD+S V+RY+SE+SHAFPV+SD EAL+KAKKE  N++VHFVWTQ
Sbjct: 386 KLLTVLNDYGKTSSFIDDISIVRRYTSEASHAFPVSSDVEALSKAKKEVKNDKVHFVWTQ 445

Query: 450 FSELNSYHKKQADDEERLNVKLAELLSLVTCDTKSVSKKRNSPKICVEQREILARIDSRI 509
           FSELNSY KKQA+D ++LN KLAE++SL+TC+ KS + K     +  E ++IL  ID+RI
Sbjct: 446 FSELNSYFKKQAEDTDKLNAKLAEMISLLTCNKKSTTPKGIKFSVTSELKDILTCIDTRI 505

Query: 510 DSLYASLPTNAMLIICTGHGDIALVQRLRKMLVEKSETSICRDKVVKIFEELHAQAEVAL 538
            SLY  LP N MLIICTGHGD A+V RLRKML E+ ET++ R+K+VK+ EEL AQAEVAL
Sbjct: 506 RSLYHELPANTMLIICTGHGDTAIVHRLRKMLREQIETTVSREKLVKVLEELQAQAEVAL 565

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g07840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDN5_ARATH	6.1e-171	56.89	Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2	[more]
YFE9_SCHPO	1.7e-32	26.13	Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
REXO1_YEAST	1.1e-26	24.64	RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RN...	[more]
GOR_HUMAN	1.0e-24	39.43	Putative exonuclease GOR OS=Homo sapiens GN=REXO1L1P PE=5 SV=2	[more]
REXO1_MOUSE	3.0e-24	38.29	RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1	[more]

BLAST of Cp4.1LG06g07840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FIQ9_THECC	1.4e-201	64.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 O...	[more]
F6H092_VITVI	5.2e-201	66.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15280 PE=4 SV=...	[more]
B9S2M9_RICCO	2.2e-199	63.43	Rnase h, putative OS=Ricinus communis GN=RCOM_0559410 PE=4 SV=1	[more]
A0A0D2RHL6_GOSRA	1.4e-198	65.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083600 PE=4 SV=1	[more]
K7M768_SOYBN	3.1e-198	64.39	Uncharacterized protein OS=Glycine max GN=GLYMA_14G119200 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g07840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25800.1	3.5e-172	56.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G05540.1	6.8e-19	28.52	small RNA degrading nuclease 2	[more]
AT3G50100.1	2.2e-17	28.44	small RNA degrading nuclease 1	[more]
AT5G67240.1	3.2e-16	32.86	small RNA degrading nuclease 3	[more]
AT3G50090.1	2.0e-10	28.17	Exonuclease family protein	[more]

BLAST of Cp4.1LG06g07840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133351\|ref\|XP_008466693.1\|	6.8e-263	82.26	PREDICTED: small RNA degrading nuclease 5 [Cucumis melo]	[more]
gi\|449458093\|ref\|XP_004146782.1\|	1.1e-260	81.57	PREDICTED: small RNA degrading nuclease 5 [Cucumis sativus]	[more]
gi\|1009175078\|ref\|XP_015868684.1\|	5.2e-202	65.03	PREDICTED: small RNA degrading nuclease 5 [Ziziphus jujuba]	[more]
gi\|590600012\|ref\|XP_007019342.1\|	2.0e-201	64.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 [...	[more]
gi\|225457811\|ref\|XP_002278571.1\|	7.5e-201	66.36	PREDICTED: small RNA degrading nuclease 5 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013520	Exonuclease_RNaseT/DNA_pol3
IPR012337	RNaseH-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008859	exoribonuclease II activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g07840.1	Cp4.1LG06g07840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 229..337 score: 3.9
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 215..333 score: 2.78
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 230..283 score: 4.
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 219..362 score: 1.6
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 22..537 score: 2.9E
None	No IPR available	PANTHER	PTHR12801:SF51	PROTEIN Y56A3A.33	coord: 22..537 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g07840	CmaCh09G010700	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g07840	CmaCh01G010180	Cucurbita maxima (Rimu)	cmacpeB508
Cp4.1LG06g07840	CmoCh09G010780	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g07840	CmoCh01G010600	Cucurbita moschata (Rifu)	cmocpeB464
Cp4.1LG06g07840	Csa6G397180	Cucumber (Chinese Long) v2	cpecuB796
Cp4.1LG06g07840	MELO3C010583	Melon (DHL92) v3.5.1	cpemeB720
Cp4.1LG06g07840	CSPI06G20550	Wild cucumber (PI 183967)	cpecpiB795
Cp4.1LG06g07840	Lsi08G002790	Bottle gourd (USVL1VR-Ls)	cpelsiB646
Cp4.1LG06g07840	MELO3C010582.2	Melon (DHL92) v3.6.1	cpemedB855
Cp4.1LG06g07840	CsaV3_6G035590	Cucumber (Chinese Long) v3	cpecucB0986
Cp4.1LG06g07840	Bhi04G001705	Wax gourd	cpewgoB0983
Cp4.1LG06g07840	CsGy6G019990	Cucumber (Gy14) v2	cgybcpeB872
Cp4.1LG06g07840	Carg26648	Silver-seed gourd	carcpeB0856

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g07840	Silver-seed gourd	carcpeB0097
Cp4.1LG06g07840	Silver-seed gourd	carcpeB1161
Cp4.1LG06g07840	Wax gourd	cpewgoB0984
Cp4.1LG06g07840	Cucurbita pepo (Zucchini)	cpecpeB228
Cp4.1LG06g07840	Cucurbita pepo (Zucchini)	cpecpeB404
Cp4.1LG06g07840	Cucurbita pepo (Zucchini)	cpecpeB460
Cp4.1LG06g07840	Cucumber (Gy14) v1	cgycpeB0129
Cp4.1LG06g07840	Cucurbita maxima (Rimu)	cmacpeB335
Cp4.1LG06g07840	Cucurbita maxima (Rimu)	cmacpeB754
Cp4.1LG06g07840	Cucurbita moschata (Rifu)	cmocpeB299
Cp4.1LG06g07840	Cucurbita moschata (Rifu)	cmocpeB708
Cp4.1LG06g07840	Wild cucumber (PI 183967)	cpecpiB794
Cp4.1LG06g07840	Cucumber (Chinese Long) v2	cpecuB795
Cp4.1LG06g07840	Bottle gourd (USVL1VR-Ls)	cpelsiB648
Cp4.1LG06g07840	Watermelon (Charleston Gray)	cpewcgB710
Cp4.1LG06g07840	Watermelon (97103) v1	cpewmB757
Cp4.1LG06g07840	Melon (DHL92) v3.5.1	cpemeB723
Cp4.1LG06g07840	Melon (DHL92) v3.6.1	cpemedB858