Cp4.1LG06g04720 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g04720
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	sequence-specific DNA binding transcription factors
Location	Cp4.1LG06 : 2299831 .. 2302657 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCGCGTTAGACACCCGTGAGGAATGGGGCATTCGTGGCTTCTCCAATTCTACCGCGAAGATTGGGCATCGAGAGCGGAAGGGCAACGCACGAAGCTACGGCTTCACTTCATCTGAAATTGGTAAAGTGAACAACTCTCTCTCTCTCTCTCAACTGATAAATCTTCAGCATTGCAATATCATCATCGTTCATTCGATTTATTTTGCAATTTCGATCACTTTCCAACTTTTCGCGCACTCTTTTCTGCTTTACTTTGATTTACTTCTTAATTCATCCGCTAGGCGAACGAAATCGTGAGTATAAGCGTCTATTCTACCCGATATCCTTCGATTCTTTGTTTATTGTTGATGGAATCAACATCGTTTCAATTTAATCTCATAAATTTATGGTTTGTTTAGTTTCTACTACGGAATGGCGTTTGATTTTTCGTCGTCTCGTGTTGAATCGTGGATAGACTCATTTGGATTTGAAATAGAGATTTGAAATTTTCGAAACTGGAAACGAAGAACATTTGAGTTGGAAATGAAGAAAGAAAACGGCAACTGTGGATCGGGGGTTTCAGGTTCTCGTCGGACGCGGTCTCAAATAGCACCGGAATGGACCGCGGCGGAATGCCTTGTTCTTGTTAATGTGATTGGTGCTGTGGAGGCTGATTGTTTGAAAGCTTTGTCTAGCTATCAGAAATGGAAGATTGTTGCAGAGGACTGCACAGCTTTGAATGTGGCTCGGACTTCGAATCAATGCAGGAAGAAGTGGGAGTGTTTGCTGATTGAACAGGATGTTATCAAGCAATGGGAGTTAACGATGCCGGAGGATGATTCGTATTGGTGTTTAGAGAGTGGAAGGAGAAAAGAATTAGGACTTCCTGACTACTTTGACGAGGAGCTGTTCAAAGCAATTGATAATGTCTCATCAATGAGGGCGAACCAGTCGGATACGGAGCCCGATAACGATCCAGAGGCTGCCGTTGAGAACGCCGATGAAATTTCAGAGCCTGGTATGATACTTTATTTCCTAGAGCTCTTAGAGATTAAGTTTTCATGTGAATTTATTGCTTTAAGTACACTTCGATAATAATCATGTTTTGATTTTGCGAGTGGTCAACAAGGGAAATGAAAATAAAGAGCATAGAGGGAATGAGTTCTAGCACGGTAGCTAGGCTAGGTAAGACGGTTGTCCCATGAGAATAGTTTATGGATATTACAAAAATTACAGTTTTTGCTCCTTGGCCAACCCCTAGAGGTTGGCCTCAAGGGCCTCAACTTTGGCCGGAGCTCATGGGGGTCGGCCTTTCGGGCTCGATTGTGACCCTCTTCAGATACCCTTCATTGCCTTTAGACATCCTAGCGATTAGTCGTGTCAGTTATGAGCATAATGCAAGCAGGGGTTCTGATAGCCTGGTTATAAGATGATATCTTGTTTTAGTTTCTTGATCAGTGATGATCAGTGATTGAGGAAATTTCAGAAACGTTTTTTCTTCTTCTTGCTTTCGATGCTAAAAACTCCGGAAAGAATAGTTTAACTGCTTCAGAGTCTCAGATACTGTGCTTCCTTCGAACATTTCATGAATATATGTGCTTGTATCTAGAAATCATGTCTACGTAAAAATCAAAACGAGACATAGAACGGGTCGGTATTATGGTGATTCCAGGATCTAGATTCATTATTTCTTTTCCTTATAATCCATGAGGTGCAATTTGAACTTTTCTAACTGCATTTTCATAAGGGTTAATTGTGAATTTTTTTAAAACCGAAAAAACGGGTTTGTCGTAACTGCATAAATAGCTTTGCATCATGTTCTAAAGTGTGGTTAAAGGGTGAGATGGATCTTACAATGGCTGTCTTCAAATTACTTCAATAATATTGGTCTTCTTATTTCTGATTTTTTCATGTTAGGCCCTAAAAGGCAAAGACGTGGTTCAATGTCTAAGAGAAATCAAGGCCTTGAGAAATCTTTAGAATGTAAAGAAGACGAAGAGGATGAAGCAGAAGAACAACCTCTATTAAGCTCTCCAGAATCAGACCTTCGCGATTGCTACATCAAAAACAACGGAGCAAAGGCGACCGACGACATTGAACCCGAAGAGCAAATGATGGTGAAGAAATTGCTTGAAAATGCAGAAAATGTTCAAGAAATTGTGTCTGAGAATGCAGAATGTGCAACTTCTGATGAAAAGAATGACAAGGACCAAACTAATTTGATAAGACGTCAAGGGAGCAAGCTTATCAGATGCCTAGGAGATTTTCTCAACACCATTAACGATCTCCGTGACCTGCTCGAAGATTGTGAGTGATTCTCTCTTCACGAAAATTTAGGTTTTCGTTGACCCACCAAGTAAGCGTTGTTCTCAAATGGTATCCTCGACTCCGTACGTAAATGTTTGTTTAAATCATTTTGTTAGCACGTCTTAGGAAATTGCCAATTTGTTGACGGTTTAGACTTTTGAATCTTCTCGTCTTTCTTCCTACAGACAAAATGTCAGGTTGGCCATTCGAGCAACGCTTAAACGCCGTCGACATTTTCCAGGTTACAGATAGAAACCCAATCTAATGTTTATTTATGAAAACTTTTCTTTTTTTGTTCTTTTTTTCATGAATAACAAGAAAGATCGTACCAAACTCCAAACTAGGAACATTAAACTATGTTGTGCTATTCCCTTTGATGGAGAGTGGGGGGAACAAACTATGCAATATCTCTTAAAAGAACCAGCCTTTAAACAGCTCATCAAAACAAGAAACTTCTCTTTATTGCTTCTCCATTTTGATCTTCCTTCATTTTCCCTTCCAAATACACTTTGCAACACCTTCCCTCACCCATGGCTCATAC

mRNA sequence

TGCGCGTTAGACACCCGTGAGGAATGGGGCATTCGTGGCTTCTCCAATTCTACCGCGAAGATTGGGCATCGAGAGCGGAAGGGCAACGCACGAAGCTACGGCTTCACTTCATCTGAAATTGTTTCTACTACGGAATGGCGTTTGATTTTTCGTCGTCTCGTGTTGAATCGTGGATAGACTCATTTGGATTTGAAATAGAGATTTGAAATTTTCGAAACTGGAAACGAAGAACATTTGAGTTGGAAATGAAGAAAGAAAACGGCAACTGTGGATCGGGGGTTTCAGGTTCTCGTCGGACGCGGTCTCAAATAGCACCGGAATGGACCGCGGCGGAATGCCTTGTTCTTGTTAATGTGATTGGTGCTGTGGAGGCTGATTGTTTGAAAGCTTTGTCTAGCTATCAGAAATGGAAGATTGTTGCAGAGGACTGCACAGCTTTGAATGTGGCTCGGACTTCGAATCAATGCAGGAAGAAGTGGGAGTGTTTGCTGATTGAACAGGATGTTATCAAGCAATGGGAGTTAACGATGCCGGAGGATGATTCGTATTGGTGTTTAGAGAGTGGAAGGAGAAAAGAATTAGGACTTCCTGACTACTTTGACGAGGAGCTGTTCAAAGCAATTGATAATGTCTCATCAATGAGGGCGAACCAGTCGGATACGGAGCCCGATAACGATCCAGAGGCTGCCGTTGAGAACGCCGATGAAATTTCAGAGCCTGGCCCTAAAAGGCAAAGACGTGGTTCAATGTCTAAGAGAAATCAAGGCCTTGAGAAATCTTTAGAATGTAAAGAAGACGAAGAGGATGAAGCAGAAGAACAACCTCTATTAAGCTCTCCAGAATCAGACCTTCGCGATTGCTACATCAAAAACAACGGAGCAAAGGCGACCGACGACATTGAACCCGAAGAGCAAATGATGGTGAAGAAATTGCTTGAAAATGCAGAAAATGTTCAAGAAATTGTGTCTGAGAATGCAGAATGTGCAACTTCTGATGAAAAGAATGACAAGGACCAAACTAATTTGATAAGACGTCAAGGGAGCAAGCTTATCAGATGCCTAGGAGATTTTCTCAACACCATTAACGATCTCCGTGACCTGCTCGAAGATTGTGAGTGATTCTCTCTTCACGAAAATTTAGGTTTTCGTTGACCCACCAAGTAAGCGTTGTTCTCAAATGGTATCCTCGACTCCGTACGTAAATGTTTGTTTAAATCATTTTGTTAGCACGTCTTAGGAAATTGCCAATTTGTTGACGGTTTAGACTTTTGAATCTTCTCGTCTTTCTTCCTACAGACAAAATGTCAGGTTGGCCATTCGAGCAACGCTTAAACGCCGTCGACATTTTCCAGGTTACAGATAGAAACCCAATCTAATGTTTATTTATGAAAACTTTTCTTTTTTTGTTCTTTTTTTCATGAATAACAAGAAAGATCGTACCAAACTCCAAACTAGGAACATTAAACTATGTTGTGCTATTCCCTTTGATGGAGAGTGGGGGGAACAAACTATGCAATATCTCTTAAAAGAACCAGCCTTTAAACAGCTCATCAAAACAAGAAACTTCTCTTTATTGCTTCTCCATTTTGATCTTCCTTCATTTTCCCTTCCAAATACACTTTGCAACACCTTCCCTCACCCATGGCTCATAC

Coding sequence (CDS)

ATGAAGAAAGAAAACGGCAACTGTGGATCGGGGGTTTCAGGTTCTCGTCGGACGCGGTCTCAAATAGCACCGGAATGGACCGCGGCGGAATGCCTTGTTCTTGTTAATGTGATTGGTGCTGTGGAGGCTGATTGTTTGAAAGCTTTGTCTAGCTATCAGAAATGGAAGATTGTTGCAGAGGACTGCACAGCTTTGAATGTGGCTCGGACTTCGAATCAATGCAGGAAGAAGTGGGAGTGTTTGCTGATTGAACAGGATGTTATCAAGCAATGGGAGTTAACGATGCCGGAGGATGATTCGTATTGGTGTTTAGAGAGTGGAAGGAGAAAAGAATTAGGACTTCCTGACTACTTTGACGAGGAGCTGTTCAAAGCAATTGATAATGTCTCATCAATGAGGGCGAACCAGTCGGATACGGAGCCCGATAACGATCCAGAGGCTGCCGTTGAGAACGCCGATGAAATTTCAGAGCCTGGCCCTAAAAGGCAAAGACGTGGTTCAATGTCTAAGAGAAATCAAGGCCTTGAGAAATCTTTAGAATGTAAAGAAGACGAAGAGGATGAAGCAGAAGAACAACCTCTATTAAGCTCTCCAGAATCAGACCTTCGCGATTGCTACATCAAAAACAACGGAGCAAAGGCGACCGACGACATTGAACCCGAAGAGCAAATGATGGTGAAGAAATTGCTTGAAAATGCAGAAAATGTTCAAGAAATTGTGTCTGAGAATGCAGAATGTGCAACTTCTGATGAAAAGAATGACAAGGACCAAACTAATTTGATAAGACGTCAAGGGAGCAAGCTTATCAGATGCCTAGGAGATTTTCTCAACACCATTAACGATCTCCGTGACCTGCTCGAAGATTGTGAGTGA

Protein sequence

MKKENGNCGSGVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCTALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELFKAIDNVSSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSMSKRNQGLEKSLECKEDEEDEAEEQPLLSSPESDLRDCYIKNNGAKATDDIEPEEQMMVKKLLENAENVQEIVSENAECATSDEKNDKDQTNLIRRQGSKLIRCLGDFLNTINDLRDLLEDCE

Homology

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BLAST of Cp4.1LG06g04720 vs. TrEMBL
Match: A0A0A0LDW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G882960 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.7e-121
Identity = 239/311 (76.85%), Postives = 261/311 (83.92%), Query Frame = 1


Query: 1   MKKEN-GNCGSGVSGSRRTRSQIA--PEWTAAECLVLVNVIGAVEADCLKALSSYQKWKI 60
           MKKEN GN GSGVSGSRRTRSQIA  P WTAA+CLVLVNVI AVEADCLKALSSYQKWKI
Sbjct: 1   MKKENAGNRGSGVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKI 60

Query: 61  VAEDCTALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDY 120
           VAE+CT+L+V RTSNQCR+KW+CLLIE DVIKQWEL MP+DDSYWCL SGRRKELGLP+ 
Sbjct: 61  VAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWCLASGRRKELGLPEN 120

Query: 121 FDEELFKAIDNVSSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSMSKRNQ---- 180
           FDEELFKAIDNV+SMRANQSDTEPD+DPEAA+ NADEI+EPGPKRQRR SMSK NQ    
Sbjct: 121 FDEELFKAIDNVASMRANQSDTEPDSDPEAAIGNADEIAEPGPKRQRRRSMSKSNQVLEK 180

Query: 181 --------GLEKSLECKEDEE------DEAEEQPLLSSPESDLRDCYIKNNGAKATDDIE 240
                   GLE SLECKE E+      +E EE+PLLSSPE + R+CYIK+N +K TD+IE
Sbjct: 181 SLECERNLGLEISLECKEVEDRGERGGEEVEEKPLLSSPELEPRECYIKSNESKVTDNIE 240

Query: 241 PEEQMMVKKLLENAENVQEIVSENAECATSDEKNDKDQTNLIRRQGSKLIRCLGDFLNTI 291
           P+EQMM K LLENAE VQ IVSENAE  TSDEK  KDQTNL+R QGSKLIRCLGD LNTI
Sbjct: 241 PKEQMMAKFLLENAEKVQAIVSENAEYTTSDEKCAKDQTNLVRHQGSKLIRCLGDILNTI 300

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BLAST of Cp4.1LG06g04720 vs. TrEMBL
Match: M5Y8E8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025574mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.9e-58
Identity = 143/327 (43.73%), Postives = 203/327 (62.08%), Query Frame = 1


Query: 4   ENGNCGSGVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCT 63
           +   CGS  S  R TRSQ+AP+W + + L+LVN I AVEADCLKALSS+QKWKI++++C+
Sbjct: 11  DRSQCGS--SSRRSTRSQVAPDWNSTDELLLVNEIAAVEADCLKALSSFQKWKIISQNCS 70

Query: 64  ALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELF 123
           AL V RT +Q R+KW+ L ++   IKQWE       SYW LE GRRK+ GLP+ FD ELF
Sbjct: 71  ALGVPRTLDQYRRKWDALFLQYKSIKQWESASRGGASYWVLEIGRRKQKGLPENFDNELF 130

Query: 124 KAIDNVSSMRANQSDTEPDNDPEAAVEN----ADEISEPGPKRQRRGSMSKRNQGLEKSL 183
           +AIDN+  +R NQSDT+PD+DPEA ++      D ++EP  KR+RR S  +++  +E SL
Sbjct: 131 RAIDNLVRVRGNQSDTDPDSDPEAEIDAEADVPDVVAEPESKRRRRRSTHQKSCSIENSL 190

Query: 184 EC------------KEDEEDEAEEQP-------------LLSSPESDL------RDCYIK 243
           E             ++ EE  AEE+P             L   P+  L      + C  K
Sbjct: 191 EDVRWKSLKKPRVEEKPEETHAEEKPQETHAEEKPVGSCLEVIPQKSLAEQKSQKSCAKK 250

Query: 244 NNGAKATD---DIEPEEQMMVKKLLENAENVQEIVSENAEC-ATSDEKNDKD-QTNLIRR 291
           +  ++  +    IE +EQ+ V +L EN E +Q IV+ENA+  A +D K+  D QT+L+RR
Sbjct: 251 HKNSQIKEKAISIEEQEQIAVMQLHENVELIQAIVNENADHEAAADVKSTGDPQTDLVRR 310

[Close]

BLAST of Cp4.1LG06g04720 vs. TrEMBL
Match: V4UBC7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009072mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.7e-47
Identity = 126/297 (42.42%), Postives = 177/297 (59.60%), Query Frame = 1


Query: 11  GVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCTALNVART 70
           G SG+RRTRSQ+ P+W++ E L+LVN I AVEADCLKALSSYQKWKI++E CTAL+V RT
Sbjct: 4   GSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRT 63

Query: 71  SNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELFKAIDNVS 130
           +NQCR+KW+ LL E   +     T P   +    +         P  FD ELFKAI +  
Sbjct: 64  ANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDC-------FPPNFDSELFKAIHDFV 123

Query: 131 SMRANQS-DTEPDN--DPEAAVENADEISEPGPKRQRRGSMSKRNQGLEKSLE------- 190
             + N+S DT+PD+  DPEA    A   ++ G KRQRR SM  ++   +K L+       
Sbjct: 124 MSKDNRSDDTDPDSDTDPEAYFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENH 183

Query: 191 ----CKEDE--EDEAEEQPLLSSPESDLRDCYIKNNGAKATDDIEPEEQMMVKKLLENAE 250
               C E++      EE+P +   E   ++ +IK         +E  EQMMV KL ENAE
Sbjct: 184 QKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSHIKEK-KSLKSCVEENEQMMVAKLQENAE 243

Query: 251 NVQEIVSENAECATSDEKNDKD-QTNLIRRQGSKLIRCLGDFLNTINDLRDLLEDCE 291
            +  IV+E+A+ + +D  N +D ++  +RRQG KLI CLG+ +NT+N   D +++C+
Sbjct: 244 LIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK 292

[Close]

BLAST of Cp4.1LG06g04720 vs. TrEMBL
Match: A0A067FII2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022763mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.0e-47
Identity = 126/297 (42.42%), Postives = 176/297 (59.26%), Query Frame = 1


Query: 11  GVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCTALNVART 70
           G SG+RRTRSQ+ P+W++ E L+LVN I AVEADCLKALSSYQKWKI++E CTAL+V RT
Sbjct: 4   GSSGTRRTRSQVGPDWSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRT 63

Query: 71  SNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELFKAIDNVS 130
           +NQCR+KW+ LL E   +     T P   +    +         P  FD ELFKAI +  
Sbjct: 64  ANQCRRKWDSLLDEYKKMIVRSRTFPNSQTQTHTDC-------FPPNFDSELFKAIHDFV 123

Query: 131 SMRANQS-DTEPDN--DPEAAVENADEISEPGPKRQRRGSMSKRNQGLEKSLE------- 190
             + N+S DT+PD+  DPEA    A   ++ G KRQRR SM  ++   +K L+       
Sbjct: 124 MSKDNRSDDTDPDSDTDPEADFSEAISQAQLGSKRQRRQSMRVKHCAEQKPLKSCLHENH 183

Query: 191 ----CKEDE--EDEAEEQPLLSSPESDLRDCYIKNNGAKATDDIEPEEQMMVKKLLENAE 250
               C E++      EE+P +   E   ++  IK         +E  EQMMV KL ENAE
Sbjct: 184 QKSGCTEEKLCNSHVEEEPRIRLVEKKCQNSRIKEK-KSLKSCVEENEQMMVAKLQENAE 243

Query: 251 NVQEIVSENAECATSDEKNDKD-QTNLIRRQGSKLIRCLGDFLNTINDLRDLLEDCE 291
            +  IV+E+A+ + +D  N +D ++  +RRQG KLI CLG+ +NT+N   D +++C+
Sbjct: 244 LIHAIVAESADYSDADLNNVQDLESEFVRRQGDKLIACLGEIVNTLNQFTDHVQECK 292

[Close]

BLAST of Cp4.1LG06g04720 vs. TrEMBL
Match: F6H2V6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g02870 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44
Identity = 103/208 (49.52%), Postives = 140/208 (67.31%), Query Frame = 1


Query: 10  SGVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCTALNVAR 69
           S VS SRRTRSQ+AP+WT  + L+LVN I AVE +CL ALS+YQKWKI+AE+CTAL+V+R
Sbjct: 63  SRVSSSRRTRSQLAPDWTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSR 122

Query: 70  TSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELFKAIDNV 129
           T NQCR+KW+ LL E + IK+WE +   + S+W LES RR+ELGLP  F+ ELFKAID++
Sbjct: 123 TFNQCRRKWDSLLFEYNKIKKWE-SRSRNVSFWTLESERRRELGLPVDFERELFKAIDDL 182

Query: 130 SSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSMSKRNQGLEKSLECKEDEEDEA 189
            S +  +SDT+P  DPEA  +  + I+E GPK+Q+R  M ++   LE           E 
Sbjct: 183 VSSQEVRSDTDPGTDPEAEDDRLEVIAEYGPKKQKRREMPQKTTSLE-----------EK 242

Query: 190 EEQPLLSSPE-SDLRDCYIKNNGAKATD 217
           E+  ++   E +DL D  +K N   + D
Sbjct: 243 EQMMVMKLRENADLIDAIVKGNLVDSVD 258

[Close]

BLAST of Cp4.1LG06g04720 vs. TAIR10
Match: AT4G31270.1 (AT4G31270.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 110/292 (37.67%), Postives = 168/292 (57.53%), Query Frame = 1


Query: 11  GVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCTALNVART 70
           G SGSRRTRSQ+APEW   +CLVLVN I AVEADC  ALSS+QKW ++ E+C AL+V+R 
Sbjct: 4   GTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDVSRN 63

Query: 71  SNQCRKKWECLLIEQDVIKQWELT-MPEDDSYWCLESGRRKELGLPDYFDEELFKAIDNV 130
            NQCR+KW+ L+ + + IK+WE        SYW L S +RK L LP   D ELF+AI+ V
Sbjct: 64  LNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAINAV 123

Query: 131 SSMRANQSDTEPDNDPEA--AVENADEISEPGPKRQRRGSM----SKRNQGLEKSLECKE 190
             ++  ++ TE D+DPEA   V+ + E++  G KR R+ +M    +K+ +     ++   
Sbjct: 124 VMIQDEKAGTESDSDPEAQDVVDLSAELAFVGSKRSRQRTMVMKETKKEEPRTSRVQVNT 183

Query: 191 DEE---DEAEEQPLLSSPESDLRDCYIKNNGAKATDDIEPEEQMMVKKLLENAENVQEIV 250
            E+    +A  Q      +  + D    +     T +IE + ++M  KL    + +  IV
Sbjct: 184 REKPITTKATHQNKTMGEKKPVED-MSTDEEEDETMNIEEDVEVMEAKLSYKIDLIHAIV 243

Query: 251 SEN--AECATSDEKNDKDQTNLIRRQGSKLIRCLGDFLNTINDLRDLLEDCE 291
             N   +  T D  +  D+   +R+QG +LI CL + ++T+N L ++ ++ E
Sbjct: 244 GRNLAKDNETKDGVSMDDKLKSVRQQGDELIGCLSEIVSTLNRLHEVPQEIE 294

[Close]

BLAST of Cp4.1LG06g04720 vs. NCBI nr
Match: gi|449437322|ref|XP_004136441.1| (PREDICTED: uncharacterized protein LOC101210084 [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 2.4e-121
Identity = 239/311 (76.85%), Postives = 261/311 (83.92%), Query Frame = 1


Query: 1   MKKEN-GNCGSGVSGSRRTRSQIA--PEWTAAECLVLVNVIGAVEADCLKALSSYQKWKI 60
           MKKEN GN GSGVSGSRRTRSQIA  P WTAA+CLVLVNVI AVEADCLKALSSYQKWKI
Sbjct: 1   MKKENAGNRGSGVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKI 60

Query: 61  VAEDCTALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDY 120
           VAE+CT+L+V RTSNQCR+KW+CLLIE DVIKQWEL MP+DDSYWCL SGRRKELGLP+ 
Sbjct: 61  VAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWCLASGRRKELGLPEN 120

Query: 121 FDEELFKAIDNVSSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSMSKRNQ---- 180
           FDEELFKAIDNV+SMRANQSDTEPD+DPEAA+ NADEI+EPGPKRQRR SMSK NQ    
Sbjct: 121 FDEELFKAIDNVASMRANQSDTEPDSDPEAAIGNADEIAEPGPKRQRRRSMSKSNQVLEK 180

Query: 181 --------GLEKSLECKEDEE------DEAEEQPLLSSPESDLRDCYIKNNGAKATDDIE 240
                   GLE SLECKE E+      +E EE+PLLSSPE + R+CYIK+N +K TD+IE
Sbjct: 181 SLECERNLGLEISLECKEVEDRGERGGEEVEEKPLLSSPELEPRECYIKSNESKVTDNIE 240

Query: 241 PEEQMMVKKLLENAENVQEIVSENAECATSDEKNDKDQTNLIRRQGSKLIRCLGDFLNTI 291
           P+EQMM K LLENAE VQ IVSENAE  TSDEK  KDQTNL+R QGSKLIRCLGD LNTI
Sbjct: 241 PKEQMMAKFLLENAEKVQAIVSENAEYTTSDEKCAKDQTNLVRHQGSKLIRCLGDILNTI 300

[Close]

BLAST of Cp4.1LG06g04720 vs. NCBI nr
Match: gi|659132591|ref|XP_008466281.1| (PREDICTED: uncharacterized protein LOC103503736 isoform X1 [Cucumis melo])

HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117
Identity = 232/311 (74.60%), Postives = 260/311 (83.60%), Query Frame = 1


Query: 1   MKKEN-GNCGSGVSGSRRTRSQIA--PEWTAAECLVLVNVIGAVEADCLKALSSYQKWKI 60
           MKKEN GN GSGVSGSRRTRSQIA  P WTAA+CLVLVNVI AVEADCLKALSSYQKWKI
Sbjct: 1   MKKENAGNRGSGVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKI 60

Query: 61  VAEDCTALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDY 120
           VAE+CT+L+V RTSNQCR+KW+CLLIE DVIKQWEL MP+DDSYW L SGRRKELGLP+ 
Sbjct: 61  VAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWRLASGRRKELGLPEN 120

Query: 121 FDEELFKAIDNVSSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSMSK------- 180
           FDEELFKAIDNV+SMRANQSDTEPD+DPEAA+ENA+EI+EPGPKRQRR SMSK       
Sbjct: 121 FDEELFKAIDNVASMRANQSDTEPDSDPEAAIENANEIAEPGPKRQRRRSMSKSNQALEN 180

Query: 181 -----RNQGLEKSLECKEDEE------DEAEEQPLLSSPESDLRDCYIKNNGAKATDDIE 240
                RNQ LE SLECKE E+      +E +E+PLLSSPE + ++ YIK+N +K  DD+E
Sbjct: 181 SPECERNQALEISLECKEVEDGGEGEGEEVKEKPLLSSPELESQEYYIKSNESKVADDVE 240

Query: 241 PEEQMMVKKLLENAENVQEIVSENAECATSDEKNDKDQTNLIRRQGSKLIRCLGDFLNTI 291
           P+EQMM K LLENAE VQ IVSENAE  TSDEK +KDQTNL+R QGSKLIRCLGD LNTI
Sbjct: 241 PKEQMMAKFLLENAEKVQAIVSENAEYTTSDEKCNKDQTNLVRHQGSKLIRCLGDILNTI 300

[Close]

BLAST of Cp4.1LG06g04720 vs. NCBI nr
Match: gi|659132597|ref|XP_008466284.1| (PREDICTED: uncharacterized protein LOC103503736 isoform X2 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 6.2e-69
Identity = 140/171 (81.87%), Postives = 154/171 (90.06%), Query Frame = 1


Query: 1   MKKEN-GNCGSGVSGSRRTRSQIA--PEWTAAECLVLVNVIGAVEADCLKALSSYQKWKI 60
           MKKEN GN GSGVSGSRRTRSQIA  P WTAA+CLVLVNVI AVEADCLKALSSYQKWKI
Sbjct: 1   MKKENAGNRGSGVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKI 60

Query: 61  VAEDCTALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDY 120
           VAE+CT+L+V RTSNQCR+KW+CLLIE DVIKQWEL MP+DDSYW L SGRRKELGLP+ 
Sbjct: 61  VAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWRLASGRRKELGLPEN 120

Query: 121 FDEELFKAIDNVSSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSM 169
           FDEELFKAIDNV+SMRANQSDTEPD+DPEAA+ENA+EI+EP  K   RGS+
Sbjct: 121 FDEELFKAIDNVASMRANQSDTEPDSDPEAAIENANEIAEPVNK--GRGSI 169

[Close]

BLAST of Cp4.1LG06g04720 vs. NCBI nr
Match: gi|645226294|ref|XP_008219973.1| (PREDICTED: uncharacterized protein LOC103320122 [Prunus mume])

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-58
Identity = 139/320 (43.44%), Postives = 198/320 (61.88%), Query Frame = 1


Query: 10  SGVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCTALNVAR 69
           SG S  R TRSQ+AP+W   + L+LVN I AVEADCLKALSS+QKWKI++++C+AL V R
Sbjct: 8   SGSSSRRSTRSQVAPDWNPTDELLLVNEIAAVEADCLKALSSFQKWKIISQNCSALGVPR 67

Query: 70  TSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELFKAIDNV 129
           T +Q R+KW+ L +E   IKQWE       SYW LE GRRK+ GLP+ FD ELF+AIDN+
Sbjct: 68  TLDQYRRKWDALFLEYKSIKQWESASRGGASYWVLEIGRRKQKGLPENFDNELFRAIDNL 127

Query: 130 SSMRANQSDTEPDNDPEAAVENA----DEISEPGPKRQRRGSMSKRNQGLEKSLE-CKED 189
             +R NQSDT+PD+DPEA ++      D ++EP  KR+RR S  +++  ++ S   CK +
Sbjct: 128 VRVRGNQSDTDPDSDPEAEIDAEADVPDVVAEPESKRRRRRSTHQKSCPIKNSFRRCKVE 187

Query: 190 EEDE--------------------AEEQPLLS----------SPESDLRDCYIKNNGAKA 249
             +E                    AEE+P+ S          + E   + C  K+  ++ 
Sbjct: 188 RPEETHVEEKPEETHAEVKPQETHAEEKPVGSCLEVIPQKSLAEEKSQKSCAKKHKNSQI 247

Query: 250 TD---DIEPEEQMMVKKLLENAENVQEIVSENAECATSDEKNDKD-QTNLIRRQGSKLIR 291
            +    IE +EQ+ V +L EN E +Q IV+ENA+   +D K+  D QT+L+RRQG ++I 
Sbjct: 248 KEKAISIEEQEQIAVMQLHENVELIQAIVNENADHEAADVKSTGDPQTDLVRRQGDQVIA 307

[Close]

BLAST of Cp4.1LG06g04720 vs. NCBI nr
Match: gi|596295947|ref|XP_007227091.1| (hypothetical protein PRUPE_ppa025574mg [Prunus persica])

HSP 1 Score: 232.6 bits (592), Expect = 8.5e-58
Identity = 143/327 (43.73%), Postives = 203/327 (62.08%), Query Frame = 1


Query: 4   ENGNCGSGVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCLKALSSYQKWKIVAEDCT 63
           +   CGS  S  R TRSQ+AP+W + + L+LVN I AVEADCLKALSS+QKWKI++++C+
Sbjct: 11  DRSQCGS--SSRRSTRSQVAPDWNSTDELLLVNEIAAVEADCLKALSSFQKWKIISQNCS 70

Query: 64  ALNVARTSNQCRKKWECLLIEQDVIKQWELTMPEDDSYWCLESGRRKELGLPDYFDEELF 123
           AL V RT +Q R+KW+ L ++   IKQWE       SYW LE GRRK+ GLP+ FD ELF
Sbjct: 71  ALGVPRTLDQYRRKWDALFLQYKSIKQWESASRGGASYWVLEIGRRKQKGLPENFDNELF 130

Query: 124 KAIDNVSSMRANQSDTEPDNDPEAAVEN----ADEISEPGPKRQRRGSMSKRNQGLEKSL 183
           +AIDN+  +R NQSDT+PD+DPEA ++      D ++EP  KR+RR S  +++  +E SL
Sbjct: 131 RAIDNLVRVRGNQSDTDPDSDPEAEIDAEADVPDVVAEPESKRRRRRSTHQKSCSIENSL 190

Query: 184 EC------------KEDEEDEAEEQP-------------LLSSPESDL------RDCYIK 243
           E             ++ EE  AEE+P             L   P+  L      + C  K
Sbjct: 191 EDVRWKSLKKPRVEEKPEETHAEEKPQETHAEEKPVGSCLEVIPQKSLAEQKSQKSCAKK 250

Query: 244 NNGAKATD---DIEPEEQMMVKKLLENAENVQEIVSENAEC-ATSDEKNDKD-QTNLIRR 291
           +  ++  +    IE +EQ+ V +L EN E +Q IV+ENA+  A +D K+  D QT+L+RR
Sbjct: 251 HKNSQIKEKAISIEEQEQIAVMQLHENVELIQAIVNENADHEAAADVKSTGDPQTDLVRR 310

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g04720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g04720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDW0_CUCSA	1.7e-121	76.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G882960 PE=4 SV=1	[more]
M5Y8E8_PRUPE	5.9e-58	43.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025574mg PE=4 SV=1	[more]
V4UBC7_9ROSI	2.7e-47	42.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009072mg PE=4 SV=1	[more]
A0A067FII2_CITSI	8.0e-47	42.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022763mg PE=4 SV=1	[more]
F6H2V6_VITVI	6.3e-44	49.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g02870 PE=4 SV=...	[more]

BLAST of Cp4.1LG06g04720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31270.1	1.5e-41	37.67	sequence-specific DNA binding transcription factors	[more]

BLAST of Cp4.1LG06g04720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437322\|ref\|XP_004136441.1\|	2.4e-121	76.85	PREDICTED: uncharacterized protein LOC101210084 [Cucumis sativus]	[more]
gi\|659132591\|ref\|XP_008466281.1\|	1.6e-117	74.60	PREDICTED: uncharacterized protein LOC103503736 isoform X1 [Cucumis melo]	[more]
gi\|659132597\|ref\|XP_008466284.1\|	6.2e-69	81.87	PREDICTED: uncharacterized protein LOC103503736 isoform X2 [Cucumis melo]	[more]
gi\|645226294\|ref\|XP_008219973.1\|	5.0e-58	43.44	PREDICTED: uncharacterized protein LOC103320122 [Prunus mume]	[more]
gi\|596295947\|ref\|XP_007227091.1\|	8.5e-58	43.73	hypothetical protein PRUPE_ppa025574mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017877	Myb-like_dom
IPR009057	Homeobox-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g04720.1	Cp4.1LG06g04720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 25..82 score: 9.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 26..101 score: 3.2
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 26..82 score: 7
None	No IPR available	unknown	Coil	Coil	coord: 172..192 scor
None	No IPR available	PANTHER	PTHR33492	FAMILY NOT NAMED	coord: 9..289 score: 1.8
None	No IPR available	PANTHER	PTHR33492:SF4	SUBFAMILY NOT NAMED	coord: 9..289 score: 1.8
None	No IPR available	PFAM	PF13837	Myb_DNA-bind_4	coord: 24..92 score: 5.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g04720	Cucurbita pepo (Zucchini)	cpecpeB137
Cp4.1LG06g04720	Cucurbita pepo (Zucchini)	cpecpeB467
Cp4.1LG06g04720	Cucurbita pepo (Zucchini)	cpecpeB512
Cp4.1LG06g04720	Cucumber (Gy14) v1	cgycpeB0443
Cp4.1LG06g04720	Cucumber (Gy14) v1	cgycpeB0828
Cp4.1LG06g04720	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g04720	Cucurbita maxima (Rimu)	cmacpeB201
Cp4.1LG06g04720	Cucurbita maxima (Rimu)	cmacpeB502
Cp4.1LG06g04720	Cucurbita maxima (Rimu)	cmacpeB788
Cp4.1LG06g04720	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g04720	Cucurbita moschata (Rifu)	cmocpeB173
Cp4.1LG06g04720	Cucurbita moschata (Rifu)	cmocpeB460
Cp4.1LG06g04720	Cucurbita moschata (Rifu)	cmocpeB741
Cp4.1LG06g04720	Wild cucumber (PI 183967)	cpecpiB775
Cp4.1LG06g04720	Wild cucumber (PI 183967)	cpecpiB778
Cp4.1LG06g04720	Cucumber (Chinese Long) v2	cpecuB773
Cp4.1LG06g04720	Cucumber (Chinese Long) v2	cpecuB776
Cp4.1LG06g04720	Bottle gourd (USVL1VR-Ls)	cpelsiB652
Cp4.1LG06g04720	Bottle gourd (USVL1VR-Ls)	cpelsiB636
Cp4.1LG06g04720	Watermelon (Charleston Gray)	cpewcgB705
Cp4.1LG06g04720	Watermelon (Charleston Gray)	cpewcgB714
Cp4.1LG06g04720	Watermelon (97103) v1	cpewmB761
Cp4.1LG06g04720	Watermelon (97103) v1	cpewmB770
Cp4.1LG06g04720	Melon (DHL92) v3.5.1	cpemeB719
Cp4.1LG06g04720	Melon (DHL92) v3.5.1	cpemeB728
Cp4.1LG06g04720	Cucumber (Gy14) v2	cgybcpeB255
Cp4.1LG06g04720	Cucumber (Gy14) v2	cgybcpeB436
Cp4.1LG06g04720	Melon (DHL92) v3.6.1	cpemedB854
Cp4.1LG06g04720	Melon (DHL92) v3.6.1	cpemedB861
Cp4.1LG06g04720	Silver-seed gourd	carcpeB0086
Cp4.1LG06g04720	Silver-seed gourd	carcpeB0782
Cp4.1LG06g04720	Silver-seed gourd	carcpeB0906
Cp4.1LG06g04720	Silver-seed gourd	carcpeB1366
Cp4.1LG06g04720	Cucumber (Chinese Long) v3	cpecucB0959
Cp4.1LG06g04720	Cucumber (Chinese Long) v3	cpecucB0964
Cp4.1LG06g04720	Wax gourd	cpewgoB0977
Cp4.1LG06g04720	Wax gourd	cpewgoB0988