Cp4.1LG06g03320 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g03320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Clathrin assembly family protein
Location	Cp4.1LG06 : 1872179 .. 1873678 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTAAAGTTGGATTTACCGAGGAATATATATATATATATATATATATATTTTTGTGTTCGTTGAATCCTTAGATTGGGAGGGGCTATATCGTGATTGAAGTAGTGAGTTTGAGAGAGCTGTATCGACATAGAACAGTAGAATAGTAGGAGGATTTTGACATATAGAATAGTAGGATGATTTTGATGCGCTGTGCCCTCTAGTGGAGGAGAGTTTTGAGTTGTATTCGGATATTTATGAAGTCTTGGCTCTTTTGCATGATAAGTTCCTTGGTATGGAGCATCCGGACTGTGTCAAGGCATTTGATGCGTATGATATTGCAGGGAAGCAGATTGATGAGCTCTCTGTGTTTTATAAATTGGTGTAAAGATGTAGGTGTTGTAAGGTCTTCTAAGTATCTAGAGGTTCGGAGAATTGACTGCAAGGTATTGGAGACATTGGATACGTTTGTTAAGGACAGAGCAAAAGACTGACGAATCGAGAGGAGGAGCAACGTTTACCTTGTTGAGGATTACTGAGAGGAGTACTCTCCTTTGGTTAATTAAGAGGAAAATCATGAGTTTATGACTAAGAAACACTATTTCCATTGGTATCAAGTCTTTAGAGGAAACTAAAACAAACCAAAAGCAAAGCCATGAGAGCTTGCTTATGAAGTAAATAATACCGTACTATTGTGGAGATTCCTGATTCTTAATATGGTATCAGAACTATGCTCTTAACTTAATCATGCCAATAAAATCAGTCGAACAAAGAAGTTGTGAGCCTCAAAGGGATACTTTGTTCGAGGGCTCTAGAGAAAGAGTTGATTCTCGATTAAGGGGGAGGATATTCAATTGCAGCTCTGGAGAAAGAGGTCTCAAGGGAGGCTCTATAGTGTACTTTTTTCGAGAAAAAGATGGTTGAGGATTATGGAGAGGAATTTCATGAACTAATTCCTGCTTTACCTCTAGGAAGAGCCAGTGCCTGATATGAATGAAATAAAAGCTCTACCTCTCCACCTCAAAATTATACTTGAACCTCCTCCTGAGCCCAAACCTCAACAACAATTCGTAGAAGACTTGGTCAATTTGAGAGACGATGCTGTTAGTTCAGATGATCAAGGTCATAGTCGTCTGGCACTGGCTTTGTTTGCTGGCTCAGCAGCTAATGGCACAAATGAATCCCGGGAAGCTTTCCCTTCTTCCAATCGACAGCCAGAAGTAACCCATGGCACGGCAGACGCCTGCTGCTGAACATGGGAAAGCGGATTGGGAATTGGCCTTCATATAGACGGCAAGCAATTTAATGAGGTAGAGAGCAGCACTTGGTGGTGGATTTGATCCATTATTGTTACATGGCATGTATGATCAAAGAATAGTTAGACTGCATACCAGCACTGCCCAATTAAGTGGTGGAAGTGCTAGCAGTCTACCAACAACAAAACTCCTGATTTGGCTCTTCCAGCCCCAGATGGAACCATTCAAACGGTTAATCAGGATCCTTTCGCCCCCATCGTAA

mRNA sequence

ATGACGGATGATTTTGATGCGCTGTGCCCTCTAGTGGAGGAGAGTTTTGAGTTGTATTCGGATATTTATGAAGTCTTGGCTCTTTTGCATGATAAGTTCCTTGGTATGGAGCATCCGGACTGTGTCAAGGCATTTGATGCGTATGATATTGCAGGGAAGCAGATTGATGAGCTCTCTGTGTTTTATAAATTGCCCAAACCTCAACAACAATTCGTAGAAGACTTGGTCAATTTGAGAGACGATGCTGTTAGTTCAGATGATCAAGGTCATAGTCGTCTGGCACTGGCTTTGTTTGCTGGCTCAGCAGCTAATGGCACAAATGAATCCCGGGAAGCTTTCCCTTCTTCCAATCGACAGCCAGAAAGAGCAGCACTTGGTGGTGGATTTGATCCATTATTGTTACATGGCATGTATGATCAAAGAATAGTTAGACTGCATACCAGCACTGCCCAATTAAGTGGTGGAAGTGCTAGCAGTCTACCAACAACAAAACTCCTGATTTGGCTCTTCCAGCCCCAGATGGAACCATTCAAACGGTTAATCAGGATCCTTTCGCCCCCATCGTAA

Coding sequence (CDS)

ATGACGGATGATTTTGATGCGCTGTGCCCTCTAGTGGAGGAGAGTTTTGAGTTGTATTCGGATATTTATGAAGTCTTGGCTCTTTTGCATGATAAGTTCCTTGGTATGGAGCATCCGGACTGTGTCAAGGCATTTGATGCGTATGATATTGCAGGGAAGCAGATTGATGAGCTCTCTGTGTTTTATAAATTGCCCAAACCTCAACAACAATTCGTAGAAGACTTGGTCAATTTGAGAGACGATGCTGTTAGTTCAGATGATCAAGGTCATAGTCGTCTGGCACTGGCTTTGTTTGCTGGCTCAGCAGCTAATGGCACAAATGAATCCCGGGAAGCTTTCCCTTCTTCCAATCGACAGCCAGAAAGAGCAGCACTTGGTGGTGGATTTGATCCATTATTGTTACATGGCATGTATGATCAAAGAATAGTTAGACTGCATACCAGCACTGCCCAATTAAGTGGTGGAAGTGCTAGCAGTCTACCAACAACAAAACTCCTGATTTGGCTCTTCCAGCCCCAGATGGAACCATTCAAACGGTTAATCAGGATCCTTTCGCCCCCATCGTAA

Protein sequence

MTDDFDALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDCVKAFDAYDIAGKQIDELSVFYKLPKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPSSNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSGGSASSLPTTKLLIWLFQPQMEPFKRLIRILSPPS

Homology

[Close]

BLAST of Cp4.1LG06g03320 vs. Swiss-Prot
Match: CAP2_ARATH (Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 8.5e-19
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 1


Query: 65  PKPQQ-QFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS-------- 124
           P+P++ QF EDLVNLR+D V++DDQG+ + ALALFAG   N  N   EAF S        
Sbjct: 426 PQPEKPQFTEDLVNLREDEVTADDQGN-KFALALFAGPPGN--NGKWEAFSSNGVTSAWQ 485

Query: 125 -------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSGGS 161
                              SN + + AALGGGFD LLL+GMYDQ +VR H ST+QL+GGS
Sbjct: 486 NPAAEPGKADWELALVETTSNLEKQTAALGGGFDNLLLNGMYDQGMVRQHVSTSQLTGGS 545

[Close]

BLAST of Cp4.1LG06g03320 vs. Swiss-Prot
Match: CAP1_ARATH (Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 9.5e-18
Identity = 58/123 (47.15%), Postives = 74/123 (60.16%), Query Frame = 1


Query: 65  PKPQQ-QFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANG--------TNESREAFPS 124
           PKPQQ Q  +DLVNLR+D VS DDQG+ + ALALFAG  AN          N    A+ +
Sbjct: 406 PKPQQPQVTDDLVNLREDDVSGDDQGN-KFALALFAGPPANNGKWEAFSSDNNVTSAWQN 465

Query: 125 ------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSGGSA 161
                             SN + ++AA+GGG DPLLL+GMYDQ  VR H ST++L+GGS+
Sbjct: 466 PAAELGKADWELALVETASNLEHQKAAMGGGLDPLLLNGMYDQGAVRQHVSTSELTGGSS 525

[Close]

BLAST of Cp4.1LG06g03320 vs. Swiss-Prot
Match: AP180_ARATH (Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 7   ALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDCVKAFDAYDIAGKQIDELSVFYKLPK 66
           +L  +++ESF+LY DI + LALL D F  +++  C+ AF A   A KQ +EL+ FY L K
Sbjct: 239 SLYAVMQESFDLYRDISDGLALLLDSFFHLQYQSCINAFQACVRASKQFEELNAFYDLSK 298

[Close]

BLAST of Cp4.1LG06g03320 vs. Swiss-Prot
Match: CAP4_ARATH (Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 22/56 (39.29%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 7   ALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDCVKAFDAYDIAGKQIDELSVFY 63
           AL P+V+ESF++Y D+ E++ +L ++F+ ++ PD +K +D +    KQ +EL  FY
Sbjct: 235 ALYPIVKESFQIYYDVTEIMGILIERFMELDIPDSIKVYDIFCRVSKQFEELDQFY 290

[Close]

BLAST of Cp4.1LG06g03320 vs. TrEMBL
Match: A0A0A0LJA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G877670 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-25
Identity = 73/126 (57.94%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  +DLVNLRDDAVS+DDQG+ +LALALFAG AANG N S EAFPS         
Sbjct: 416 PKPQPQVTDDLVNLRDDAVSADDQGN-KLALALFAGPAANGANGSWEAFPSDGQPEVTSA 475

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++AALGGG DPLLL+GMYDQ +VR HTSTAQLSG
Sbjct: 476 WQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSG 535

[Close]

BLAST of Cp4.1LG06g03320 vs. TrEMBL
Match: A0A151RLK9_CAJCA (Putative clathrin assembly protein At2g25430 family OS=Cajanus cajan GN=KK1_035144 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 72/126 (57.14%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  EDLVNLRDDAVS+DDQG+ RLALALFAG+  N TN S EAFPS         
Sbjct: 395 PKPQPQVTEDLVNLRDDAVSADDQGN-RLALALFAGAPGNNTNGSWEAFPSNGQPEVTSA 454

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++AALGGGFDPLLL GMYDQ +VR H ST QLSG
Sbjct: 455 WQTPAAEPGKADWELALVETASNLSKQKAALGGGFDPLLLTGMYDQGMVRQHVSTTQLSG 514

[Close]

BLAST of Cp4.1LG06g03320 vs. TrEMBL
Match: A0A0B2PKL8_GLYSO (Putative clathrin assembly protein OS=Glycine soja GN=glysoja_032321 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 69/126 (54.76%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  EDLVNLRDDAV++DDQG+ +LALALFAG+ AN  N S EAFPS         
Sbjct: 207 PKPQPQVTEDLVNLRDDAVTADDQGN-KLALALFAGAPANNVNGSWEAFPSNGQPEVTSA 266

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++A LGGGFDPLLL GMYDQ +VR H ST QLSG
Sbjct: 267 WQTPAAEPGKADWELALVETASNLSKQKATLGGGFDPLLLTGMYDQGMVRQHVSTTQLSG 326

[Close]

BLAST of Cp4.1LG06g03320 vs. TrEMBL
Match: I1JUC2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G066400 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 69/126 (54.76%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  EDLVNLRDDAV++DDQG+ +LALALFAG+ AN  N S EAFPS         
Sbjct: 415 PKPQPQVTEDLVNLRDDAVTADDQGN-KLALALFAGAPANNVNGSWEAFPSNGQPEVTSA 474

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++A LGGGFDPLLL GMYDQ +VR H ST QLSG
Sbjct: 475 WQTPAAEPGKADWELALVETASNLSKQKATLGGGFDPLLLTGMYDQGMVRQHVSTTQLSG 534

[Close]

BLAST of Cp4.1LG06g03320 vs. TrEMBL
Match: B9HAE9_POPTR (Clathrin assembly family protein OS=Populus trichocarpa GN=POPTR_0006s27110g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-23
Identity = 71/127 (55.91%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 65  PKPQQ-QFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS-------- 124
           PKPQQ QF EDLVNLRDDAV++DDQG+ R ALALFAG  AN  N S EAFPS        
Sbjct: 419 PKPQQPQFAEDLVNLRDDAVTADDQGN-RFALALFAGPPANNGNGSWEAFPSNGEPQLTS 478

Query: 125 ----------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLS 161
                                 SN   ++A LGGGFDPLLL+GMYDQ +VR H  TAQLS
Sbjct: 479 AWQTPAAEPGKADWELALVETASNLSKQKATLGGGFDPLLLNGMYDQGMVRQHVGTAQLS 538

[Close]

BLAST of Cp4.1LG06g03320 vs. TAIR10
Match: AT2G25430.1 (AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related)

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-20
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 1


Query: 65  PKPQQ-QFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS-------- 124
           P+P++ QF EDLVNLR+D V++DDQG+ + ALALFAG   N  N   EAF S        
Sbjct: 426 PQPEKPQFTEDLVNLREDEVTADDQGN-KFALALFAGPPGN--NGKWEAFSSNGVTSAWQ 485

Query: 125 -------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSGGS 161
                              SN + + AALGGGFD LLL+GMYDQ +VR H ST+QL+GGS
Sbjct: 486 NPAAEPGKADWELALVETTSNLEKQTAALGGGFDNLLLNGMYDQGMVRQHVSTSQLTGGS 545

[Close]

BLAST of Cp4.1LG06g03320 vs. TAIR10
Match: AT4G32285.1 (AT4G32285.1 ENTH/ANTH/VHS superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-19
Identity = 58/123 (47.15%), Postives = 74/123 (60.16%), Query Frame = 1


Query: 65  PKPQQ-QFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANG--------TNESREAFPS 124
           PKPQQ Q  +DLVNLR+D VS DDQG+ + ALALFAG  AN          N    A+ +
Sbjct: 406 PKPQQPQVTDDLVNLREDDVSGDDQGN-KFALALFAGPPANNGKWEAFSSDNNVTSAWQN 465

Query: 125 ------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSGGSA 161
                             SN + ++AA+GGG DPLLL+GMYDQ  VR H ST++L+GGS+
Sbjct: 466 PAAELGKADWELALVETASNLEHQKAAMGGGLDPLLLNGMYDQGAVRQHVSTSELTGGSS 525

[Close]

BLAST of Cp4.1LG06g03320 vs. TAIR10
Match: AT1G03050.1 (AT1G03050.1 ENTH/ANTH/VHS superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 22/56 (39.29%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 7   ALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDCVKAFDAYDIAGKQIDELSVFY 63
           AL P+V+ESF++Y D+ E++ +L ++F+ ++ PD +K +D +    KQ +EL  FY
Sbjct: 235 ALYPIVKESFQIYYDVTEIMGILIERFMELDIPDSIKVYDIFCRVSKQFEELDQFY 290

[Close]

BLAST of Cp4.1LG06g03320 vs. TAIR10
Match: AT1G05020.1 (AT1G05020.1 ENTH/ANTH/VHS superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 7   ALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDCVKAFDAYDIAGKQIDELSVFYKLPK 66
           +L  +++ESF+LY DI + LALL D F  +++  C+ AF A   A KQ +EL+ FY L K
Sbjct: 239 SLYAVMQESFDLYRDISDGLALLLDSFFHLQYQSCINAFQACVRASKQFEELNAFYDLSK 298

[Close]

BLAST of Cp4.1LG06g03320 vs. TAIR10
Match: AT4G02650.1 (AT4G02650.1 ENTH/ANTH/VHS superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 21/56 (37.50%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 7   ALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDCVKAFDAYDIAGKQIDELSVFY 63
           A+ P+V+ESF+LY +I E++ +L ++F+ ++  D +K ++ +    KQ DEL  FY
Sbjct: 240 AMYPIVKESFQLYYNITEIMGVLIERFMELDIHDSIKVYEIFCRVSKQFDELDPFY 295

[Close]

BLAST of Cp4.1LG06g03320 vs. NCBI nr
Match: gi|296082045|emb|CBI21050.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 93/228 (40.79%), Postives = 120/228 (52.63%), Query Frame = 1


Query: 7   ALCPLVEESFELYSDIYEVLALLHDKFLGMEHPDC---------VKAF------------ 66
           AL P+V ESF+LY+DI EVLA+L D+F  ME+PDC         ++ F            
Sbjct: 221 ALYPVVRESFQLYADICEVLAVLLDRFFEMEYPDCRITDKLLETLEEFVRDRAKGPKSPE 280

Query: 67  ---DAYDIAGKQ--IDELSVFYKLP-----------------KPQQ-QFVEDLVNLRDDA 126
              +   +A ++  + +++    LP                 KPQQ Q  EDLVNLRD+ 
Sbjct: 281 RNEEPQPVAREEEPVPDMNEIKALPPPENYTPPPPPPPEPEPKPQQPQVTEDLVNLRDEG 340

Query: 127 VSSDDQGHSRLALALFAGSAANGTNESREAFPS--------------------------- 161
           V++DDQG+ R ALALFAG  AN TN S EAFPS                           
Sbjct: 341 VTADDQGN-RFALALFAGPGANNTNGSWEAFPSNGQPEVTSAWQTPAAETGKADWELALV 400

[Close]

BLAST of Cp4.1LG06g03320 vs. NCBI nr
Match: gi|449437144|ref|XP_004136352.1| (PREDICTED: putative clathrin assembly protein At2g25430 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-25
Identity = 73/126 (57.94%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  +DLVNLRDDAVS+DDQG+ +LALALFAG AANG N S EAFPS         
Sbjct: 416 PKPQPQVTDDLVNLRDDAVSADDQGN-KLALALFAGPAANGANGSWEAFPSDGQPEVTSA 475

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++AALGGG DPLLL+GMYDQ +VR HTSTAQLSG
Sbjct: 476 WQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSG 535

[Close]

BLAST of Cp4.1LG06g03320 vs. NCBI nr
Match: gi|659132847|ref|XP_008466416.1| (PREDICTED: putative clathrin assembly protein At2g25430 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-25
Identity = 73/126 (57.94%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  +DLVNLRDDAVS+DDQG+ +LALALFAG AANG N S EAFPS         
Sbjct: 416 PKPQPQVTDDLVNLRDDAVSADDQGN-KLALALFAGPAANGANGSWEAFPSDGQPEVTSA 475

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++AALGGG DPLLL+GMYDQ +VR HTSTAQLSG
Sbjct: 476 WQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSG 535

[Close]

BLAST of Cp4.1LG06g03320 vs. NCBI nr
Match: gi|1012331973|gb|KYP43422.1| (Putative clathrin assembly protein At2g25430 family [Cajanus cajan])

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 72/126 (57.14%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ Q  EDLVNLRDDAVS+DDQG+ RLALALFAG+  N TN S EAFPS         
Sbjct: 395 PKPQPQVTEDLVNLRDDAVSADDQGN-RLALALFAGAPGNNTNGSWEAFPSNGQPEVTSA 454

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++AALGGGFDPLLL GMYDQ +VR H ST QLSG
Sbjct: 455 WQTPAAEPGKADWELALVETASNLSKQKAALGGGFDPLLLTGMYDQGMVRQHVSTTQLSG 514

[Close]

BLAST of Cp4.1LG06g03320 vs. NCBI nr
Match: gi|828313611|ref|XP_012571642.1| (PREDICTED: putative clathrin assembly protein At2g25430 [Cicer arietinum])

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-23
Identity = 68/126 (53.97%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 65  PKPQQQFVEDLVNLRDDAVSSDDQGHSRLALALFAGSAANGTNESREAFPS--------- 124
           PKPQ QF EDL+NLR+DAV++DDQG+ R ALALFAG+ AN  N S EAFPS         
Sbjct: 406 PKPQPQFTEDLMNLREDAVTADDQGN-RFALALFAGAPANNANGSWEAFPSNGQPEVTSA 465

Query: 125 ---------------------SNRQPERAALGGGFDPLLLHGMYDQRIVRLHTSTAQLSG 161
                                SN   ++AALGGG DPLLL+GMYDQ +VR H ST+QLSG
Sbjct: 466 WQTPAAEPGKADWELALVETASNLSKQKAALGGGLDPLLLNGMYDQGMVRQHVSTSQLSG 525

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g03320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CAP2_ARATH	8.5e-19	49.19	Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g2543...	[more]
CAP1_ARATH	9.5e-18	47.15	Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g3228...	[more]
AP180_ARATH	4.4e-07	45.00	Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1	[more]
CAP4_ARATH	4.4e-07	39.29	Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g0305...	[more]

BLAST of Cp4.1LG06g03320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA4_CUCSA	3.3e-25	57.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G877670 PE=4 SV=1	[more]
A0A151RLK9_CAJCA	2.1e-24	57.14	Putative clathrin assembly protein At2g25430 family OS=Cajanus cajan GN=KK1_0351...	[more]
A0A0B2PKL8_GLYSO	4.0e-23	54.76	Putative clathrin assembly protein OS=Glycine soja GN=glysoja_032321 PE=4 SV=1	[more]
I1JUC2_SOYBN	4.0e-23	54.76	Uncharacterized protein OS=Glycine max GN=GLYMA_04G066400 PE=4 SV=1	[more]
B9HAE9_POPTR	5.2e-23	55.91	Clathrin assembly family protein OS=Populus trichocarpa GN=POPTR_0006s27110g PE=...	[more]

BLAST of Cp4.1LG06g03320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25430.1	4.8e-20	49.19	epsin N-terminal homology (ENTH) domain-containing protein / clathri...	[more]
AT4G32285.1	5.3e-19	47.15	ENTH/ANTH/VHS superfamily protein	[more]
AT1G03050.1	2.5e-08	39.29	ENTH/ANTH/VHS superfamily protein	[more]
AT1G05020.1	2.5e-08	45.00	ENTH/ANTH/VHS superfamily protein	[more]
AT4G02650.1	1.0e-06	37.50	ENTH/ANTH/VHS superfamily protein	[more]

BLAST of Cp4.1LG06g03320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|296082045\|emb\|CBI21050.3\|	1.3e-27	40.79	unnamed protein product [Vitis vinifera]	[more]
gi\|449437144\|ref\|XP_004136352.1\|	4.7e-25	57.94	PREDICTED: putative clathrin assembly protein At2g25430 [Cucumis sativus]	[more]
gi\|659132847\|ref\|XP_008466416.1\|	4.7e-25	57.94	PREDICTED: putative clathrin assembly protein At2g25430 [Cucumis melo]	[more]
gi\|1012331973\|gb\|KYP43422.1\|	3.0e-24	57.14	Putative clathrin assembly protein At2g25430 family [Cajanus cajan]	[more]
gi\|828313611\|ref\|XP_012571642.1\|	4.4e-23	53.97	PREDICTED: putative clathrin assembly protein At2g25430 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048268	clathrin coat assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0030276	clathrin binding
GO:0005545	1-phosphatidylinositol binding
GO:0005543	phospholipid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0030136	clathrin-coated vesicle

Vocabulary: **INTERPRO**
Term	Definition
IPR014712	Clathrin_AP_dom2
IPR011417	ANTH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048268	clathrin coat assembly
cellular_component	GO:0030136	clathrin-coated vesicle
molecular_function	GO:0005545	1-phosphatidylinositol binding
molecular_function	GO:0030276	clathrin binding
molecular_function	GO:0005543	phospholipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g03320.1	Cp4.1LG06g03320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011417	AP180 N-terminal homology (ANTH) domain	PFAM	PF07651	ANTH	coord: 7..66 score: 2.9
IPR014712	Phosphoinositide-binding clathrin adaptor, domain 2	GENE3D	G3DSA:1.20.58.150		coord: 7..71 score: 8.2
None	No IPR available	PANTHER	PTHR22951	CLATHRIN ASSEMBLY PROTEIN	coord: 7..161 score: 3.9
None	No IPR available	PANTHER	PTHR22951:SF13	SUBFAMILY NOT NAMED	coord: 7..161 score: 3.9
None	No IPR available	unknown	SSF89009	GAT-like domain	coord: 7..76 score: 1.49

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g03320	Cucumber (Gy14) v2	cgybcpeB256
Cp4.1LG06g03320	Cucumber (Gy14) v2	cgybcpeB257
Cp4.1LG06g03320	Cucumber (Gy14) v2	cgybcpeB436
Cp4.1LG06g03320	Melon (DHL92) v3.6.1	cpemedB851
Cp4.1LG06g03320	Melon (DHL92) v3.6.1	cpemedB853
Cp4.1LG06g03320	Melon (DHL92) v3.6.1	cpemedB861
Cp4.1LG06g03320	Silver-seed gourd	carcpeB0204
Cp4.1LG06g03320	Silver-seed gourd	carcpeB0906
Cp4.1LG06g03320	Silver-seed gourd	carcpeB0948
Cp4.1LG06g03320	Silver-seed gourd	carcpeB0950
Cp4.1LG06g03320	Cucumber (Chinese Long) v3	cpecucB0958
Cp4.1LG06g03320	Cucumber (Chinese Long) v3	cpecucB0962
Cp4.1LG06g03320	Cucumber (Chinese Long) v3	cpecucB0964
Cp4.1LG06g03320	Wax gourd	cpewgoB0988
Cp4.1LG06g03320	Wax gourd	cpewgoB1004
Cp4.1LG06g03320	Cucurbita pepo (Zucchini)	cpecpeB134
Cp4.1LG06g03320	Cucurbita pepo (Zucchini)	cpecpeB464
Cp4.1LG06g03320	Cucurbita pepo (Zucchini)	cpecpeB467
Cp4.1LG06g03320	Cucurbita pepo (Zucchini)	cpecpeB498
Cp4.1LG06g03320	Cucumber (Gy14) v1	cgycpeB0442
Cp4.1LG06g03320	Cucumber (Gy14) v1	cgycpeB0828
Cp4.1LG06g03320	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g03320	Cucurbita maxima (Rimu)	cmacpeB159
Cp4.1LG06g03320	Cucurbita maxima (Rimu)	cmacpeB502
Cp4.1LG06g03320	Cucurbita maxima (Rimu)	cmacpeB512
Cp4.1LG06g03320	Cucurbita maxima (Rimu)	cmacpeB785
Cp4.1LG06g03320	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g03320	Cucurbita moschata (Rifu)	cmocpeB136
Cp4.1LG06g03320	Cucurbita moschata (Rifu)	cmocpeB173
Cp4.1LG06g03320	Cucurbita moschata (Rifu)	cmocpeB460
Cp4.1LG06g03320	Cucurbita moschata (Rifu)	cmocpeB470
Cp4.1LG06g03320	Cucurbita moschata (Rifu)	cmocpeB738
Cp4.1LG06g03320	Wild cucumber (PI 183967)	cpecpiB774
Cp4.1LG06g03320	Wild cucumber (PI 183967)	cpecpiB778
Cp4.1LG06g03320	Cucumber (Chinese Long) v2	cpecuB772
Cp4.1LG06g03320	Cucumber (Chinese Long) v2	cpecuB776
Cp4.1LG06g03320	Bottle gourd (USVL1VR-Ls)	cpelsiB636
Cp4.1LG06g03320	Bottle gourd (USVL1VR-Ls)	cpelsiB643
Cp4.1LG06g03320	Bottle gourd (USVL1VR-Ls)	cpelsiB651
Cp4.1LG06g03320	Watermelon (Charleston Gray)	cpewcgB701
Cp4.1LG06g03320	Watermelon (Charleston Gray)	cpewcgB707
Cp4.1LG06g03320	Watermelon (Charleston Gray)	cpewcgB713
Cp4.1LG06g03320	Watermelon (97103) v1	cpewmB760
Cp4.1LG06g03320	Watermelon (97103) v1	cpewmB766
Cp4.1LG06g03320	Watermelon (97103) v1	cpewmB779
Cp4.1LG06g03320	Melon (DHL92) v3.5.1	cpemeB716
Cp4.1LG06g03320	Melon (DHL92) v3.5.1	cpemeB718
Cp4.1LG06g03320	Melon (DHL92) v3.5.1	cpemeB728