Cp4.1LG06g02250 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g02250
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 1234352 .. 1234549 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTCTCTAAGACTTCATTCATGGCTCTTGTAGCCGTCCTGTTCACCGTCTTCTCCGTTGCAGTTGCACAATCTGCTGAGTCCCCTGCTCCTGCACCGGCTTCTCCGGCCACCTCTGTCGTCCCGTCGTTGAGCGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTTGGATCTGCACTCAAGGCTTGA

mRNA sequence

ATGGCCGCCGTCTCTAAGACTTCATTCATGGCTCTTGTAGCCGTCCTGTTCACCGTCTTCTCCGTTGCAGTTGCACAATCTGCTGAGTCCCCTGCTCCTGCACCGGCTTCTCCGGCCACCTCTGTCGTCCCGTCGTTGAGCGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTTGGATCTGCACTCAAGGCTTGA

Coding sequence (CDS)

ATGGCCGCCGTCTCTAAGACTTCATTCATGGCTCTTGTAGCCGTCCTGTTCACCGTCTTCTCCGTTGCAGTTGCACAATCTGCTGAGTCCCCTGCTCCTGCACCGGCTTCTCCGGCCACCTCTGTCGTCCCGTCGTTGAGCGTCGCTTGCGTTGGTGCTTTCGTCGCTCTCGTCTTTGGATCTGCACTCAAGGCTTGA

Protein sequence

MAAVSKTSFMALVAVLFTVFSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFGSALKA
Homology
[Close]
BLAST of Cp4.1LG06g02250 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.6e-17
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 1  MAAVSKTSFMALVAVLFTVFSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 60
          MAAVSK SFMALVAVLF V SVAVAQSAESPAP PASPA SVVPSLS ACVGAF+AL+FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of Cp4.1LG06g02250 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-06
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1   MAAVSKTSFMALVAVLFTVFSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 60
           MAA+SK S +AL+A++F + SVA   + E+PAP+PASPATS+ PS   AC+ AF+AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

[Close]
BLAST of Cp4.1LG06g02250 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 1  MAAVSKTSFMALVAVLFTVFSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 60
          MAAVSK SFMALVAVLF V SVAVAQSAESPAP PASPA SVVPSLS ACVGAF+AL+FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of Cp4.1LG06g02250 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1   MAAVSKTSFMALVAVLFTVFSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 60
           MAA+SK S +AL+A++F + SVA   + E+PAP+PASPATS+ PS   AC+ AF+AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g02250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02250 vs. TrEMBL
Match NameE-valueIdentityDescription
Q96504_CUCSA9.6e-1787.69CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
A0A0A0LKU1_CUCSA2.0e-0656.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
BLAST of Cp4.1LG06g02250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1669529|dbj|BAA08394.1|1.4e-1687.69CRG16 [Cucumis sativus][more]
gi|700207284|gb|KGN62403.1|2.9e-0656.25hypothetical protein Csa_2G351840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02250.1Cp4.1LG06g02250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g02250CsaV3_4G035470Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g02250Carg21745Silver-seed gourdcarcpeB0448
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g02250Cucumber (Chinese Long) v3cpecucB0957
Cp4.1LG06g02250Cucumber (Chinese Long) v3cpecucB0994
Cp4.1LG06g02250Wax gourdcpewgoB0976
Cp4.1LG06g02250Wax gourdcpewgoB0997
Cp4.1LG06g02250Wax gourdcpewgoB1003
Cp4.1LG06g02250Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g02250Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g02250Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g02250Cucumber (Gy14) v1cgycpeB0923
Cp4.1LG06g02250Cucumber (Gy14) v1cgycpeB1044
Cp4.1LG06g02250Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g02250Cucurbita maxima (Rimu)cmacpeB199
Cp4.1LG06g02250Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g02250Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g02250Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g02250Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g02250Cucurbita moschata (Rifu)cmocpeB462
Cp4.1LG06g02250Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g02250Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g02250Wild cucumber (PI 183967)cpecpiB773
Cp4.1LG06g02250Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g02250Cucumber (Chinese Long) v2cpecuB771
Cp4.1LG06g02250Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g02250Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g02250Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g02250Watermelon (Charleston Gray)cpewcgB702
Cp4.1LG06g02250Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g02250Watermelon (97103) v1cpewmB756
Cp4.1LG06g02250Watermelon (97103) v1cpewmB767
Cp4.1LG06g02250Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g02250Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g02250Cucumber (Gy14) v2cgybcpeB139
Cp4.1LG06g02250Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g02250Cucumber (Gy14) v2cgybcpeB562
Cp4.1LG06g02250Melon (DHL92) v3.6.1cpemedB850
Cp4.1LG06g02250Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g02250Melon (DHL92) v3.6.1cpemedB867
Cp4.1LG06g02250Silver-seed gourdcarcpeB0142
Cp4.1LG06g02250Silver-seed gourdcarcpeB0267
Cp4.1LG06g02250Silver-seed gourdcarcpeB1083