Cp4.1LG06g00910 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g00910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase I subunit rpa43
LocationCp4.1LG06 : 389928 .. 392753 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATTTTTTATTTTTTACCTTCTCGCGCGCTCTTTCTTCTCCGGCGCTGCGGATTCTTCCTCTACTCCTTGTTGCGGTCGTCGTTTCAATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAGTAACTCGAACTTCTTTTACGCTTTCAACAATTCTCGTCTCTAATTGCCTGCAATCACAATCTTTTCCAGTTACTGATACTGTTGCTTTGTTGATGTATTTATTATTTTTCTTTGTGCATCTTGATTGGGGATGCTATCTTTTAATGGCAGAATTTGACTAGTACAACCTTCAATTTCGCCGCAATTTAACTTAGTTTTTTCCTGCATTTTTATCAACTGCCGTTTTTTTCTTTGCTGGCTTGCTATTCTGTATTGAAGAAAGAAACACCTGGTTGTGCTGTTGTTTGTGAACTCAGAATGTAAGTTTTTGTGACTTCCATGATTAGGGAATAGAGATGTTCTTCATTTAATTTGGACACAAAGGCGCAAAAGTTGGACTTCTAGTGATTGTCATTGCTGCTTCTTTTGCTTCATTCAATCAGCATTCAATTTCATTTATGTGGTACATATATGTGAACTTGTATTGAACTGACTTTGTTTAAACTGTACTCCGCGTGTAGATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTATGATTCTCACGGTATTGCCATTAGGAAAAACAACACATCTAGAGTTTAAGTTGTCCATGCTTTTCTGATAGTTTGGTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAGTATGTTTTGTGCATTGTACTTGAGAATTCATACCTTTCCCTTTGTTGTACATATGAGAAGGAAGTTCTTGATATCCTGTTCTGATTGTATTATGCATTGATTTTGACATAGAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGGTTAGATTTTTTTTCCCTTTAATCACGTTTATTCTGTATCATTGAAGTGGAAAGTTATTCTTGGAGTTTTCATTCAATTAATTGGGGCCGGAACATCAACCTCATATTTATTGATGTTTCCTGATTCTTGTTGTTCTGCTTCAGTGATCTTAATATCTTGATGTTATAAGAAGTGACTTAATTCATCCTTTACAGTTTTGATGAGGGAATACTGCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAGTGAGATAATACTACATTCTGTGAGGTTTAAGCTATAATCCCCAAATCTATTATTTTAATTTTTTTCGCCAAATTCTGTAGGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAGAAGCAAAAAACTGCCAGATTATCTTGAAGAATGCTAATTCTCATATAACATAGATCGTCTACATATCAGGTAACTTTTCCTACTCCCTCAGTAGGATGGCTAATTTCTTGCTGTCACTCAATTCATGCCTAAAATCTTCATTACCCAAAAAATTTGCTTGAAAGTAAACTTGAATTCAATTGTTTTCCTAGTGTAAGAAATGCTTGGGAGAAGCACCTTGCGCTTGGGAATATCACCTCAACTTTGATAATGACTTAACTTTATATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTTAGTGAATTATGCTTTACAGCCCAATCTGGAAGGTGATGACAGATATCAGCATCCTAGACTTCACTGAATATTGTCTGAGATTTGGACATTATATTTCTAATTTCATTCAAAATCACTTGCCTAAACACAAGACCACACCATTGTTTTATCCATGATTGAGATATTGTCTGCTTTAGTCAGTTATGTATTGTCGTCAGTCTCATGATTTTTAAAACGCGTCTACTAGGGTGAGATTTCTACACTCTTATAAAGAATAATTTGTTTTACTCTCTAACAGATGTGAAATATGATTTGCTGTTTGCAAGTACATTCCATTTGCATCCATTATATCTCTAACCTCCATCATGGGTTCCATTTTTTTTTAGAAGCTGCAAATAATTTATCATTTATAAGGTATGGGGTGTTCTGTCCAAAACAACGGGCCGCAGAATGATTCGTAATAGAAGAGAGCTGATTGTTACTCACATTTTTGAAGTTGAAGGTTGTAATCTTTGTACTCCTCGTGTTCTGGGGATAGAAAAGCCCCGGTTTTTCAAATAGGTGAACCGGGTCTACACGATCTAACTCCCATGTGAATATGTGATCCATGGTTTTTTGTTTAATCAGATAAGTCCAAACGCAGCAATATGACAGTTTTATTGTTTTCTTTGGGCGACAATGGCGGATTTGTAACATGGTATGAACTATGAAGTGGGAAGTACAAAACCGTTCAATCCAATCAAAACTAGAGTTTAAAAA

mRNA sequence

TTTTATTTTTTATTTTTTACCTTCTCGCGCGCTCTTTCTTCTCCGGCGCTGCGGATTCTTCCTCTACTCCTTGTTGCGGTCGTCGTTTCAATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTGCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAATCGTCTACATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTTAGTGAATTATGCTTTACAGCCCAATCTGGAAGGTGATGACAGATATCAGCATCCTAGACTTCACTGAATATTGTCTGAGATTTGGACATTATATTTCTAATTTCATTCAAAATCACTTGCCTAAACACAAGACCACACCATTGTTTTATCCATGATTGAGATATTGTCTGCTTTAGTCAGTTATGTATTGTCGTCAGTCTCATGATTTTTAAAACGCGTCTACTAGGGTGAGATTTCTACACTCTTATAAAGAATAATTTGTTTTACTCTCTAACAGATGTGAAATATGATTTGCTGTTTGCAAGTACATTCCATTTGCATCCATTATATCTCTAACCTCCATCATGGGTTCCATTTTTTTTTAGAAGCTGCAAATAATTTATCATTTATAAGGTATGGGGTGTTCTGTCCAAAACAACGGGCCGCAGAATGATTCGTAATAGAAGAGAGCTGATTGTTACTCACATTTTTGAAGTTGAAGGTTGTAATCTTTGTACTCCTCGTGTTCTGGGGATAGAAAAGCCCCGGTTTTTCAAATAGGTGAACCGGGTCTACACGATCTAACTCCCATGTGAATATGTGATCCATGGTTTTTTGTTTAATCAGATAAGTCCAAACGCAGCAATATGACAGTTTTATTGTTTTCTTTGGGCGACAATGGCGGATTTGTAACATGGTATGAACTATGAAGTGGGAAGTACAAAACCGTTCAATCCAATCAAAACTAGAGTTTAAAAA

Coding sequence (CDS)

ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAAATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGATACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTGCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCTTAGCAACTAATAAATCGTCTACATATCAGGGTGTGGACAAATGCAGCTACCCATTTTTGCAACTGTTAAGAAGAGATAGCCCAAATGCATATATTATGAGGTTAGGGCCAATATACATGGTTAGTGAATTATGCTTTACAGCCCAATCTGGAAGGTGA

Protein sequence

MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSSTYQGVDKCSYPFLQLLRRDSPNAYIMRLGPIYMVSELCFTAQSGR
Homology
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BLAST of Cp4.1LG06g00910 vs. Swiss-Prot
Match: RPA43_SCHPO (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa43 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-08
Identity = 43/163 (26.38%), Postives = 83/163 (50.92%), Query Frame = 1 

Query: 10  DLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYF 69
           DL + + P  S     AI   + +M+L    +  G++LAY+  + ++KSAK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  AVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEFKHITRH-G 129
            + ++  +L+FSPK    LEGK+  +    I +++LG  +A I  + I  ++  I     
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMLVSRANKHHVIKVGTMIRFLVKSF--DEGILHISGSLVPS 169
           EE    + N  ++++ G  + F+V     + G+  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

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BLAST of Cp4.1LG06g00910 vs. TrEMBL
Match: A0A0A0LGG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866520 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.7e-84
Identity = 163/186 (87.63%), Postives = 175/186 (94.09%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA++V+Y+HP+KS K+SQA+LRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVIT EDIR EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRA+KHH+IKVGTMIR LVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGLAT 187
           VEG  T
Sbjct: 181 VEGSVT 186

[Close]
BLAST of Cp4.1LG06g00910 vs. TrEMBL
Match: V4T5B5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002352mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.3e-68
Identity = 134/191 (70.16%), Postives = 160/191 (83.77%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAD+ +YLHP+KS KVSQAILREL ++L KF+E FEGVLLAY+  I+DK+ KI
Sbjct: 1   MEGLKVSDADMEVYLHPSKSKKVSQAILRELSSLLFKFNEIFEGVLLAYDVNILDKNGKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L G+HPYF V +KAKLLLFSPKPNML+EGKVV+L Q SIHVIVLGF+SA+ITD+DIR EF
Sbjct: 61  LFGIHPYFGVKLKAKLLLFSPKPNMLVEGKVVRLTQASIHVIVLGFSSAIITDQDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
            + T++GEE+  SR++K HVIKVGTMIRFLVKSFDE ILHISGSL P+HTGSI  L+K S
Sbjct: 121 NYTTKYGEEVFASRSHKRHVIKVGTMIRFLVKSFDEEILHISGSLKPAHTGSIRWLDKKS 180

Query: 181 VEGLATNKSST 192
                 + S+T
Sbjct: 181 KNVCLADSSTT 191

[Close]
BLAST of Cp4.1LG06g00910 vs. TrEMBL
Match: E0CPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13950 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.4e-65
Identity = 127/190 (66.84%), Postives = 160/190 (84.21%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGL+VSDA+L++Y+HP+K+N+VSQAILREL ++L KF+E F+GV+LAY+  I  K AKI
Sbjct: 1   MEGLRVSDANLIVYVHPSKANRVSQAILRELSSLLFKFNEIFDGVVLAYDVDIPSKDAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L G+HPYF V +KAKLLLFSPKPNML+EGKVVKL QESIH++VLGF+SA+ITDE+IR EF
Sbjct: 61  LPGIHPYFGVRLKAKLLLFSPKPNMLIEGKVVKLAQESIHIVVLGFSSAIITDEEIRGEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           K+  +HGE + VSR++K HVIKVGTMIRFLVKS DE ILHISGSL P HTGSI  L+K  
Sbjct: 121 KYKIKHGEAVFVSRSHKRHVIKVGTMIRFLVKSLDEEILHISGSLNPPHTGSILWLDKKL 180

Query: 181 VEGLATNKSS 191
            +   +++S+
Sbjct: 181 EDASPSSRST 190

[Close]
BLAST of Cp4.1LG06g00910 vs. TrEMBL
Match: A0A0D2NAR8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G111600 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.5e-64
Identity = 129/190 (67.89%), Postives = 159/190 (83.68%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGL V+DA+LV+YLHP+KS  VSQ+ILRELG++L KF+E F+GVLLAY+  I+DK AKI
Sbjct: 1   MEGLSVADANLVMYLHPSKSRNVSQSILRELGSLLFKFNETFDGVLLAYDVNILDKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF + +KA LLLFSPKP+MLLEGKVVKL QESIHVIVLGF+SA+IT E+IR EF
Sbjct: 61  LSGVHPYFGLRLKANLLLFSPKPDMLLEGKVVKLSQESIHVIVLGFSSAIITAENIRGEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           K+ T+  EE+  S+++K HVIKVGTMIRFLVKSFDE ILHI GSL+ +HTGSI  L+++ 
Sbjct: 121 KYRTKDTEELFASKSHKRHVIKVGTMIRFLVKSFDEEILHIIGSLISAHTGSIRWLDRHL 180

Query: 181 VEGLATNKSS 191
            E    ++SS
Sbjct: 181 EEDSKFDRSS 190

[Close]
BLAST of Cp4.1LG06g00910 vs. TrEMBL
Match: A0A0D2RJ67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G111600 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.4e-64
Identity = 128/189 (67.72%), Postives = 158/189 (83.60%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGL V+DA+LV+YLHP+KS  VSQ+ILRELG++L KF+E F+GVLLAY+  I+DK AKI
Sbjct: 1   MEGLSVADANLVMYLHPSKSRNVSQSILRELGSLLFKFNETFDGVLLAYDVNILDKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF + +KA LLLFSPKP+MLLEGKVVKL QESIHVIVLGF+SA+IT E+IR EF
Sbjct: 61  LSGVHPYFGLRLKANLLLFSPKPDMLLEGKVVKLSQESIHVIVLGFSSAIITAENIRGEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           K+ T+  EE+  S+++K HVIKVGTMIRFLVKSFDE ILHI GSL+ +HTGSI  L+++ 
Sbjct: 121 KYRTKDTEELFASKSHKRHVIKVGTMIRFLVKSFDEEILHIIGSLISAHTGSIRWLDRHL 180

Query: 181 VEGLATNKS 190
            E    ++S
Sbjct: 181 EEDSKFDRS 189

[Close]
BLAST of Cp4.1LG06g00910 vs. TAIR10
Match: AT1G75670.1 (AT1G75670.1 DNA-directed RNA polymerases)

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-57
Identity = 105/188 (55.85%), Postives = 145/188 (77.13%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           K+  R GE   VSR++K H +K+GTM+R  V+SFDE ++HI+GSL+P +TG +  LEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VEGLATNK 189
            E L T++
Sbjct: 181 EEALPTDR 188

[Close]
BLAST of Cp4.1LG06g00910 vs. NCBI nr
Match: gi|659132997|ref|XP_008466499.1| (PREDICTED: DNA-directed RNA polymerase I subunit rpa43 isoform X1 [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 5.0e-85
Identity = 166/189 (87.83%), Postives = 177/189 (93.65%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA++V+Y+HP+KS KVSQA+LRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVIT EDIR EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRA+KHHVIKVGTMIRFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGLATNKS 190
           VEG  +  S
Sbjct: 181 VEGSVSMSS 189

[Close]
BLAST of Cp4.1LG06g00910 vs. NCBI nr
Match: gi|659132999|ref|XP_008466500.1| (PREDICTED: DNA-directed RNA polymerase I subunit rpa43 isoform X2 [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 6.6e-85
Identity = 165/183 (90.16%), Postives = 175/183 (95.63%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA++V+Y+HP+KS KVSQA+LRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVIT EDIR EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRA+KHHVIKVGTMIRFLVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEG 184
           VEG
Sbjct: 181 VEG 183

[Close]
BLAST of Cp4.1LG06g00910 vs. NCBI nr
Match: gi|778686734|ref|XP_011652442.1| (PREDICTED: uncharacterized protein LOC101216589 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.5e-84
Identity = 163/186 (87.63%), Postives = 175/186 (94.09%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDA++V+Y+HP+KS K+SQA+LRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           LSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIHVIVLGFASAVIT EDIR EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
           KH T+HGEEM VSRA+KHH+IKVGTMIR LVKSFDE ILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGLAT 187
           VEG  T
Sbjct: 181 VEGSVT 186

[Close]
BLAST of Cp4.1LG06g00910 vs. NCBI nr
Match: gi|567885177|ref|XP_006435147.1| (hypothetical protein CICLE_v10002352mg [Citrus clementina])

HSP 1 Score: 266.9 bits (681), Expect = 3.3e-68
Identity = 134/191 (70.16%), Postives = 160/191 (83.77%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAD+ +YLHP+KS KVSQAILREL ++L KF+E FEGVLLAY+  I+DK+ KI
Sbjct: 1   MEGLKVSDADMEVYLHPSKSKKVSQAILRELSSLLFKFNEIFEGVLLAYDVNILDKNGKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L G+HPYF V +KAKLLLFSPKPNML+EGKVV+L Q SIHVIVLGF+SA+ITD+DIR EF
Sbjct: 61  LFGIHPYFGVKLKAKLLLFSPKPNMLVEGKVVRLTQASIHVIVLGFSSAIITDQDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
            + T++GEE+  SR++K HVIKVGTMIRFLVKSFDE ILHISGSL P+HTGSI  L+K S
Sbjct: 121 NYTTKYGEEVFASRSHKRHVIKVGTMIRFLVKSFDEEILHISGSLKPAHTGSIRWLDKKS 180

Query: 181 VEGLATNKSST 192
                 + S+T
Sbjct: 181 KNVCLADSSTT 191

[Close]
BLAST of Cp4.1LG06g00910 vs. NCBI nr
Match: gi|568839315|ref|XP_006473630.1| (PREDICTED: uncharacterized protein LOC102620892 isoform X1 [Citrus sinensis])

HSP 1 Score: 265.4 bits (677), Expect = 9.5e-68
Identity = 133/191 (69.63%), Postives = 160/191 (83.77%), Query Frame = 1 

Query: 1   MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAD+ +YLHP+KS KVSQAILREL ++L KF+E FEGVLLAY+  I+DK+ KI
Sbjct: 1   MEGLKVSDADMEVYLHPSKSKKVSQAILRELSSLLFKFNEIFEGVLLAYDVNILDKNGKI 60

Query: 61  LSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAVITDEDIRSEF 120
           L G+HPYF V +KAKLLLFSPKPNML+EGKVV+L Q SIHVIVLGF+SA+ITD+DIR EF
Sbjct: 61  LCGIHPYFGVKLKAKLLLFSPKPNMLVEGKVVRLTQASIHVIVLGFSSAIITDQDIREEF 120

Query: 121 KHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNS 180
            + T++GEE+  SR++K HVIKVGTMIRFLVKSFDE ILHISGSL+P+ TGSI  L+K S
Sbjct: 121 NYTTKYGEEVFASRSHKWHVIKVGTMIRFLVKSFDEEILHISGSLIPARTGSIRWLDKKS 180

Query: 181 VEGLATNKSST 192
                 + S+T
Sbjct: 181 KNVCLADSSTT 191

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g00910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPA43_SCHPO8.5e-0826.38DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain... [more]
BLAST of Cp4.1LG06g00910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGG8_CUCSA1.7e-8487.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866520 PE=4 SV=1[more]
V4T5B5_9ROSI2.3e-6870.16Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002352mg PE=4 SV=1[more]
E0CPL7_VITVI2.4e-6566.84Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13950 PE=4 SV=... [more]
A0A0D2NAR8_GOSRA1.5e-6467.89Uncharacterized protein OS=Gossypium raimondii GN=B456_005G111600 PE=4 SV=1[more]
A0A0D2RJ67_GOSRA3.4e-6467.72Uncharacterized protein OS=Gossypium raimondii GN=B456_005G111600 PE=4 SV=1[more]
BLAST of Cp4.1LG06g00910 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75670.11.6e-5755.85 DNA-directed RNA polymerases[more]
BLAST of Cp4.1LG06g00910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132997|ref|XP_008466499.1|5.0e-8587.83PREDICTED: DNA-directed RNA polymerase I subunit rpa43 isoform X1 [Cucumis melo][more]
gi|659132999|ref|XP_008466500.1|6.6e-8590.16PREDICTED: DNA-directed RNA polymerase I subunit rpa43 isoform X2 [Cucumis melo][more]
gi|778686734|ref|XP_011652442.1|2.5e-8487.63PREDICTED: uncharacterized protein LOC101216589 [Cucumis sativus][more]
gi|567885177|ref|XP_006435147.1|3.3e-6870.16hypothetical protein CICLE_v10002352mg [Citrus clementina][more]
gi|568839315|ref|XP_006473630.1|9.5e-6869.63PREDICTED: uncharacterized protein LOC102620892 isoform X1 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g00910.1Cp4.1LG06g00910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 4..182
score: 7.8
NoneNo IPR availablePANTHERPTHR12709:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43coord: 4..182
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g00910Cucsa.342880Cucumber (Gy14) v1cgycpeB0896
Cp4.1LG06g00910CmaCh09G001160Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g00910CmaCh01G019600Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g00910CmoCh01G020190Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g00910CmoCh09G001140Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g00910Cla020818Watermelon (97103) v1cpewmB765
Cp4.1LG06g00910Csa3G866520Cucumber (Chinese Long) v2cpecuB779
Cp4.1LG06g00910MELO3C003766Melon (DHL92) v3.5.1cpemeB726
Cp4.1LG06g00910ClCG05G018480Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g00910CSPI03G43250Wild cucumber (PI 183967)cpecpiB781
Cp4.1LG06g00910Lsi04G017270Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g00910MELO3C003766.2Melon (DHL92) v3.6.1cpemedB859
Cp4.1LG06g00910CsaV3_3G045700Cucumber (Chinese Long) v3cpecucB0966
Cp4.1LG06g00910Bhi09G001805Wax gourdcpewgoB0993
Cp4.1LG06g00910CsGy3G040820Cucumber (Gy14) v2cgybcpeB438
Cp4.1LG06g00910Carg17187Silver-seed gourdcarcpeB1310
Cp4.1LG06g00910Carg08688Silver-seed gourdcarcpeB0154
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g00910Cp4.1LG02g07910Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g00910Wax gourdcpewgoB0982
Cp4.1LG06g00910Cucurbita pepo (Zucchini)cpecpeB100
Cp4.1LG06g00910Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g00910Cucurbita pepo (Zucchini)cpecpeB323
Cp4.1LG06g00910Cucurbita pepo (Zucchini)cpecpeB423
Cp4.1LG06g00910Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g00910Cucurbita maxima (Rimu)cmacpeB198
Cp4.1LG06g00910Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g00910Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g00910Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g00910Wild cucumber (PI 183967)cpecpiB776
Cp4.1LG06g00910Cucumber (Chinese Long) v2cpecuB774
Cp4.1LG06g00910Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g00910Watermelon (97103) v1cpewmB756
Cp4.1LG06g00910Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g00910Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g00910Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g00910Melon (DHL92) v3.6.1cpemedB875
Cp4.1LG06g00910Silver-seed gourdcarcpeB0569
Cp4.1LG06g00910Silver-seed gourdcarcpeB1365
Cp4.1LG06g00910Cucumber (Chinese Long) v3cpecucB0960
Cp4.1LG06g00910Cucumber (Chinese Long) v3cpecucB0961
Cp4.1LG06g00910Cucumber (Chinese Long) v3cpecucB0984