Cp4.1LG05g13380 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g13380
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhosphoglycerate mutase family protein
LocationCp4.1LG05 : 9451166 .. 9451896 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAACCACGGAGTACGTGTCAACATCAAATATAATCATGTTAATAGTAAGGCCACTTACGTGGTTAGCTTAAGTTGTTGTCATGAATATATCCTTAATGAAAGTTCGATTCTGTCCTTTAAAATCTAAGTCAACCGATGTGAGCCCATTACATCAGTTTCAAGTTTGAACTCTGTAAAATTATTTCTCTAATACACGTTGGTCTATCGTTAAAAGTCTTAAAATGAGGCATTGGTTGAGAACTGTACATGTTCTTAAGATTGTGTATTAGCGAGGACGCTAGCCCTAAATTGTCAGATCACACGTCAGTTGTAGAGTAGAATGAAACATTCTTTACAAACGTAAAAAAAATCCCTCTCTAACCTACGTGAGATTGTAGGTTCACAATTTCATTAACCCAATTCAAAATTTCGGCATATCTTATACATATTTATAGTATAATAAATTGGAGCACGGGAGATTTTGTTAATTACCGTTGAACTATGGGAACATCGACTAATTTAATAATAAAAGTTATCGGACCTTAGGTTTTGCAGGTGCGCCATCTTGGTGGTCAGCCATGGGACCCCCTGCAAATATTTCAGACGGTGATGGGTGCTGCCATACATGAAAATGGATCGGGTTCCGATGAATTGGCATCGAGATTACAAGCCGCCATCACCAAGCCCATTCTCTTGCACCACCGGAAATTTGCTCTGCTCACCGGAGAGCTTCGAGCTGTCGTTTGA

mRNA sequence

ATGCAGAACCACGGAGTGCGCCATCTTGGTGGTCAGCCATGGGACCCCCTGCAAATATTTCAGACGGTGATGGGTGCTGCCATACATGAAAATGGATCGGGTTCCGATGAATTGGCATCGAGATTACAAGCCGCCATCACCAAGCCCATTCTCTTGCACCACCGGAAATTTGCTCTGCTCACCGGAGAGCTTCGAGCTGTCGTTTGA

Coding sequence (CDS)

ATGCAGAACCACGGAGTGCGCCATCTTGGTGGTCAGCCATGGGACCCCCTGCAAATATTTCAGACGGTGATGGGTGCTGCCATACATGAAAATGGATCGGGTTCCGATGAATTGGCATCGAGATTACAAGCCGCCATCACCAAGCCCATTCTCTTGCACCACCGGAAATTTGCTCTGCTCACCGGAGAGCTTCGAGCTGTCGTTTGA

Protein sequence

MQNHGVRHLGGQPWDPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV
Homology
[Close]
BLAST of Cp4.1LG05g13380 vs. TrEMBL
Match: M1B676_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014660 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-08
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQIFQT++ AA   NGS  ++LASR+QA     +L  HRKFAL TGELR+VV
Sbjct: 177 DPLQIFQTILNAAKDNNGSCENDLASRIQAVKIPSVLSQHRKFALQTGELRSVV 230

[Close]
BLAST of Cp4.1LG05g13380 vs. TrEMBL
Match: M1B675_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014660 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-08
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQIFQT++ AA   NGS  ++LASR+QA     +L  HRKFAL TGELR+VV
Sbjct: 159 DPLQIFQTILNAAKDNNGSCENDLASRIQAVKIPSVLSQHRKFALQTGELRSVV 212

[Close]
BLAST of Cp4.1LG05g13380 vs. TrEMBL
Match: A0A165A614_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015665 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-08
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQI QT++ AA    GS S++L SR+QA     I+  HRKFALLTGE+RAV+
Sbjct: 171 DPLQILQTILNAAKDTKGSDSNDLTSRIQAVKLPSIISQHRKFALLTGEIRAVI 224

[Close]
BLAST of Cp4.1LG05g13380 vs. TrEMBL
Match: A0A0V0HH73_SOLCH (Putative metal-independent phosphoserine phosphatase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-08
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQIFQT++ AA   NGS  ++LA R+QA     +L  HRKFAL TGELR+VV
Sbjct: 144 DPLQIFQTILNAAKDNNGSCENDLALRIQAVKIPSVLSQHRKFALQTGELRSVV 197

[Close]
BLAST of Cp4.1LG05g13380 vs. TrEMBL
Match: K4B477_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-07
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQIFQT++ AA   +GS  ++LA R+QA     +L  HRKFAL TGELR+VV
Sbjct: 174 DPLQIFQTILNAAKDNDGSCENDLALRIQAVKIPCVLSQHRKFALQTGELRSVV 227

[Close]
BLAST of Cp4.1LG05g13380 vs. TAIR10
Match: AT4G38370.1 (AT4G38370.1 Phosphoglycerate mutase family protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-06
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQ+ Q V  +A  + G G   LA + Q +    +L  HRKFALLTGELR ++
Sbjct: 175 DPLQMLQNVFHSAKQQEGDG---LAEKFQLSRVASVLSQHRKFALLTGELRPLI 225

[Close]
BLAST of Cp4.1LG05g13380 vs. NCBI nr
Match: gi|659120509|ref|XP_008460226.1| (PREDICTED: uncharacterized protein LOC103499109 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGS-GSDELASRLQAAITKPILLHHRKFALLTGELR 66
           DPLQIFQ +MG+A  ++GS  S++L+S  QA ITKP+L +HR+FALLTGELR
Sbjct: 192 DPLQIFQAMMGSAAKQDGSTSSNDLSSIFQALITKPVLSNHRQFALLTGELR 243

[Close]
BLAST of Cp4.1LG05g13380 vs. NCBI nr
Match: gi|565397567|ref|XP_006364362.1| (PREDICTED: uncharacterized protein LOC102600120 [Solanum tuberosum])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQIFQT++ AA   NGS  ++LASR+QA     +L  HRKFAL TGELR+VV
Sbjct: 177 DPLQIFQTILNAAKDNNGSCENDLASRIQAVKIPSVLSQHRKFALQTGELRSVV 230

[Close]
BLAST of Cp4.1LG05g13380 vs. NCBI nr
Match: gi|1021039192|gb|KZM96973.1| (hypothetical protein DCAR_015665 [Daucus carota subsp. sativus])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQI QT++ AA    GS S++L SR+QA     I+  HRKFALLTGE+RAV+
Sbjct: 171 DPLQILQTILNAAKDTKGSDSNDLTSRIQAVKLPSIISQHRKFALLTGEIRAVI 224

[Close]
BLAST of Cp4.1LG05g13380 vs. NCBI nr
Match: gi|645260704|ref|XP_008235948.1| (PREDICTED: uncharacterized protein LOC103334760 [Prunus mume])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           D LQI QT++ AA    GS  ++LASR+QA  T P+L  HRKF+LLT ELRAVV
Sbjct: 189 DTLQILQTILNAAKLNAGSSYNDLASRIQAVQTPPVLSQHRKFSLLTAELRAVV 242

[Close]
BLAST of Cp4.1LG05g13380 vs. NCBI nr
Match: gi|697097848|ref|XP_009623723.1| (PREDICTED: uncharacterized protein LOC104114881, partial [Nicotiana tomentosiformis])

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-07
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 15  DPLQIFQTVMGAAIHENGSGSDELASRLQAAITKPILLHHRKFALLTGELRAVV 69
           DPLQIFQTV+ AA +  GS  ++L SR+QA     +L  HR+FAL TGELR+VV
Sbjct: 150 DPLQIFQTVLNAAKNYKGSCENDLTSRIQAVKIPSVLSQHRRFALQTGELRSVV 203

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g13380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13380 vs. TrEMBL
Match NameE-valueIdentityDescription
M1B676_SOLTU1.0e-0861.11Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014660 PE=4 SV=1[more]
M1B675_SOLTU1.0e-0861.11Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014660 PE=4 SV=1[more]
A0A165A614_DAUCA5.0e-0857.41Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015665 PE=4 SV=1[more]
A0A0V0HH73_SOLCH5.0e-0859.26Putative metal-independent phosphoserine phosphatase-like OS=Solanum chacoense P... [more]
K4B477_SOLLC3.2e-0757.41Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Cp4.1LG05g13380 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38370.11.9e-0646.30 Phosphoglycerate mutase family protein[more]
BLAST of Cp4.1LG05g13380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120509|ref|XP_008460226.1|1.4e-0863.46PREDICTED: uncharacterized protein LOC103499109 [Cucumis melo][more]
gi|565397567|ref|XP_006364362.1|1.4e-0861.11PREDICTED: uncharacterized protein LOC102600120 [Solanum tuberosum][more]
gi|1021039192|gb|KZM96973.1|7.1e-0857.41hypothetical protein DCAR_015665 [Daucus carota subsp. sativus][more]
gi|645260704|ref|XP_008235948.1|1.6e-0759.26PREDICTED: uncharacterized protein LOC103334760 [Prunus mume][more]
gi|697097848|ref|XP_009623723.1|3.5e-0757.41PREDICTED: uncharacterized protein LOC104114881, partial [Nicotiana tomentosifor... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g13380.1Cp4.1LG05g13380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g13380Cucurbita pepo (Zucchini)cpecpeB280
Cp4.1LG05g13380Cucurbita pepo (Zucchini)cpecpeB318
Cp4.1LG05g13380Cucurbita pepo (Zucchini)cpecpeB495
Cp4.1LG05g13380Cucumber (Gy14) v1cgycpeB0210
Cp4.1LG05g13380Cucumber (Gy14) v1cgycpeB0304
Cp4.1LG05g13380Cucurbita maxima (Rimu)cmacpeB552
Cp4.1LG05g13380Cucurbita maxima (Rimu)cmacpeB579
Cp4.1LG05g13380Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g13380Cucurbita moschata (Rifu)cmocpeB135
Cp4.1LG05g13380Cucurbita moschata (Rifu)cmocpeB528
Cp4.1LG05g13380Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g13380Wild cucumber (PI 183967)cpecpiB748
Cp4.1LG05g13380Cucumber (Chinese Long) v2cpecuB746
Cp4.1LG05g13380Bottle gourd (USVL1VR-Ls)cpelsiB607
Cp4.1LG05g13380Watermelon (Charleston Gray)cpewcgB649
Cp4.1LG05g13380Watermelon (Charleston Gray)cpewcgB652
Cp4.1LG05g13380Watermelon (97103) v1cpewmB736
Cp4.1LG05g13380Watermelon (97103) v1cpewmB737
Cp4.1LG05g13380Melon (DHL92) v3.5.1cpemeB659
Cp4.1LG05g13380Cucumber (Gy14) v2cgybcpeB850
Cp4.1LG05g13380Cucumber (Gy14) v2cgybcpeB978
Cp4.1LG05g13380Melon (DHL92) v3.6.1cpemedB789
Cp4.1LG05g13380Melon (DHL92) v3.6.1cpemedB815
Cp4.1LG05g13380Silver-seed gourdcarcpeB0488
Cp4.1LG05g13380Silver-seed gourdcarcpeB1194
Cp4.1LG05g13380Cucumber (Chinese Long) v3cpecucB0925
Cp4.1LG05g13380Cucumber (Chinese Long) v3cpecucB0952
Cp4.1LG05g13380Wax gourdcpewgoB0934
Cp4.1LG05g13380Wax gourdcpewgoB0963