Cp4.1LG05g12670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g12670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Encodes a protein of unknown function that is a marker for oxidative stress response.
Location	Cp4.1LG05 : 8811282 .. 8811662 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAACAGAAAGAAAAACCATCAGCTGCAGCAAACCCACCCATCCCTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGGTATATACTTCCAATTCCTTCACTGTGCATCTAAAAGAAATAATCATGTTTGTGATACATGTGGTGGATGTGTTCATCTAATGCTTCCAAAAACTCATTTGACTGGGTACACAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATTCAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

mRNA sequence

ATGGAACAACAGAAAGAAAAACCATCAGCTGCAGCAAACCCACCCATCCCTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATTCAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Coding sequence (CDS)

ATGGAACAACAGAAAGAAAAACCATCAGCTGCAGCAAACCCACCCATCCCTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATTCAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Protein sequence

MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADKNSETSGVESSLPLRTTVSE

Homology

[Close]

BLAST of Cp4.1LG05g12670 vs. TrEMBL
Match: A0A0A0LIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247070 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.7e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPIPSCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of Cp4.1LG05g12670 vs. TrEMBL
Match: W9R2R5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018552 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1


Query: 1  MEQQKEKP----SAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI 60
          ME  K +P    SAA  PP+ SCRKKK+EEATFLED+KDHIDEFIHASMDEHK+CFKKTI
Sbjct: 1  MESHKTQPEKQSSAATKPPVSSCRKKKSEEATFLEDVKDHIDEFIHASMDEHKTCFKKTI 60

Query: 61 NKMFRMSKVVADKNSETSGVESSLPLRTTV 87
           KMF MSK+VA+++SE  GVESSLPL+TTV
Sbjct: 61 QKMFGMSKIVAERSSEAEGVESSLPLKTTV 90

[Close]

BLAST of Cp4.1LG05g12670 vs. TrEMBL
Match: A0A022R7H7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017130mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 6  EKPSAAA-NPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSK 65
          EKPS+AA NP + SCR+KKNE ATFLED+KDHIDEFI ASMDEHK+CF+KTI KMF MSK
Sbjct: 9  EKPSSAAPNPAMASCRRKKNESATFLEDVKDHIDEFISASMDEHKTCFQKTIKKMFSMSK 68

Query: 66 VVADKNSETSGVESSLPLRTTVSE 89
          VVA+++SET  VESSLPL+TTV+E
Sbjct: 69 VVAERSSETKEVESSLPLQTTVAE 92

[Close]

BLAST of Cp4.1LG05g12670 vs. TrEMBL
Match: A0A166GEX9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001537 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-25
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 2  EQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFR 61
          E+Q++ P+  A P IPSCRKKK+EEATFLED+K+HIDEFIHASMDEH SCFKKTI+KMF 
Sbjct: 4  EEQRQSPAVTA-PAIPSCRKKKSEEATFLEDVKEHIDEFIHASMDEHASCFKKTIHKMFG 63

Query: 62 MSKVVADKNSETSGVESSLPLRTT 86
          MSK+VA++NS T  VESSLPL+TT
Sbjct: 64 MSKIVAERNSRTEEVESSLPLQTT 86

[Close]

BLAST of Cp4.1LG05g12670 vs. TrEMBL
Match: A0A166IDG2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003668 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 63/89 (70.79%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 1  MEQQKEKPSAAANPPIP-SCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKM 60
          ME +KE+ S A + PI  SCRKKK+EEATFLED+KDHIDEFIHASM+EH +CFKKT+ KM
Sbjct: 1  MEAKKEQSSPAVSTPISTSCRKKKSEEATFLEDVKDHIDEFIHASMEEHATCFKKTVKKM 60

Query: 61 FRMSKVVADKNSETSGVESSLPLRTTVSE 89
          F MSK+VA++NSE+  VESSLPLRTTV++
Sbjct: 61 FGMSKIVAERNSESKEVESSLPLRTTVAD 89

[Close]

BLAST of Cp4.1LG05g12670 vs. TAIR10
Match: AT4G39235.1 (AT4G39235.1 unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 14 PPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADKNS-E 73
          P + SCRKK  ++ATF ED+KDHID+FIHASMDEHKSCF+KTI KMF +SK VA+K + E
Sbjct: 11 PAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAVAEKQAVE 70

Query: 74 TSGVESSLPLRTTVSE 89
            GVES LPL+TTVSE
Sbjct: 71 AKGVESQLPLQTTVSE 86

[Close]

BLAST of Cp4.1LG05g12670 vs. TAIR10
Match: AT3G05570.1 (AT3G05570.1 unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 9.2e-22
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME QK +      P   SCRKK  ++A FLED+KDHID+FI+ASMD+HK+CF KTI KMF
Sbjct: 1  METQKTQAENPPKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 61 RMSKVVADKNSETS--GVESSLPLRTTVSE 89
           +SK VADK    +  GVES LPL+TTVS+
Sbjct: 61 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

[Close]

BLAST of Cp4.1LG05g12670 vs. TAIR10
Match: AT2G21640.1 (AT2G21640.1 Encodes a protein of unknown function that is a marker for oxidative stress response.)

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-14
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 13  NPPIP-----SCRKK-KNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKM---FRMS 72
           NPP P     SCRK+ K++ ATF  +LKDH+DEFIHASMDEHK+CFK T++K+   F  +
Sbjct: 19  NPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKA 78

Query: 73  KVVADKNSETSG-VESSLPLRTTVSE 89
           + VA+K  E    VE   PL+T V++
Sbjct: 79  EAVAEKQIEAKEVVEIHSPLQTAVTK 104

[Close]

BLAST of Cp4.1LG05g12670 vs. NCBI nr
Match: gi|659122040|ref|XP_008460939.1| (PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 5.9e-39
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of Cp4.1LG05g12670 vs. NCBI nr
Match: gi|449462228|ref|XP_004148843.1| (PREDICTED: uncharacterized protein LOC101211034 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.9e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPIPSCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of Cp4.1LG05g12670 vs. NCBI nr
Match: gi|1009133080|ref|XP_015883712.1| (PREDICTED: uncharacterized protein LOC107419483 [Ziziphus jujuba])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 4  QKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMS 63
          +KE  SA A PP+ SCRKKK +EATFLED+KDHIDEFIHASMDEHK+CFKKTI KMFRMS
Sbjct: 9  EKEPSSAPAKPPVTSCRKKKKDEATFLEDIKDHIDEFIHASMDEHKTCFKKTIEKMFRMS 68

Query: 64 KVVADKNSETSGVESSLPLRTTV 87
          KVVA++NSET  VESSLPL+TTV
Sbjct: 69 KVVAERNSETKEVESSLPLKTTV 91

[Close]

BLAST of Cp4.1LG05g12670 vs. NCBI nr
Match: gi|703071014|ref|XP_010088925.1| (hypothetical protein L484_018552 [Morus notabilis])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1


Query: 1  MEQQKEKP----SAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI 60
          ME  K +P    SAA  PP+ SCRKKK+EEATFLED+KDHIDEFIHASMDEHK+CFKKTI
Sbjct: 1  MESHKTQPEKQSSAATKPPVSSCRKKKSEEATFLEDVKDHIDEFIHASMDEHKTCFKKTI 60

Query: 61 NKMFRMSKVVADKNSETSGVESSLPLRTTV 87
           KMF MSK+VA+++SE  GVESSLPL+TTV
Sbjct: 61 QKMFGMSKIVAERSSEAEGVESSLPLKTTV 90

[Close]

BLAST of Cp4.1LG05g12670 vs. NCBI nr
Match: gi|719996582|ref|XP_010254820.1| (PREDICTED: uncharacterized protein LOC104595677 [Nelumbo nucifera])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 59/86 (68.60%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 3  QQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRM 62
          Q +  P+++A P I SCR+KK+E+A+FLEDL+DHIDEFIHASMDEHK+CFKKTI KMF M
Sbjct: 7  QPESLPTSSAKPAITSCRRKKSEDASFLEDLRDHIDEFIHASMDEHKTCFKKTIEKMFGM 66

Query: 63 SKVVADKNSETSGVESSLPLRTTVSE 89
          SK+VA++NSE+ G+ESSLPL+TTV++
Sbjct: 67 SKIVAERNSESEGIESSLPLQTTVAK 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g12670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g12670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ4_CUCSA	2.7e-38	95.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247070 PE=4 SV=1	[more]
W9R2R5_9ROSA	1.6e-27	73.33	Uncharacterized protein OS=Morus notabilis GN=L484_018552 PE=4 SV=1	[more]
A0A022R7H7_ERYGU	1.2e-25	76.19	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017130mg PE=4 SV=1	[more]
A0A166GEX9_DAUCA	1.5e-25	73.81	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001537 PE=4 SV=1	[more]
A0A166IDG2_DAUCA	2.6e-25	70.79	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003668 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g12670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39235.1	1.3e-23	69.74	unknown protein	[more]
AT3G05570.1	9.2e-22	58.89	unknown protein	[more]
AT2G21640.1	7.0e-14	51.16	Encodes a protein of unknown function that is a marker for oxidative...	[more]

BLAST of Cp4.1LG05g12670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122040\|ref\|XP_008460939.1\|	5.9e-39	96.59	PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo]	[more]
gi\|449462228\|ref\|XP_004148843.1\|	3.9e-38	95.45	PREDICTED: uncharacterized protein LOC101211034 [Cucumis sativus]	[more]
gi\|1009133080\|ref\|XP_015883712.1\|	2.1e-28	79.52	PREDICTED: uncharacterized protein LOC107419483 [Ziziphus jujuba]	[more]
gi\|703071014\|ref\|XP_010088925.1\|	2.3e-27	73.33	hypothetical protein L484_018552 [Morus notabilis]	[more]
gi\|719996582\|ref\|XP_010254820.1\|	1.3e-25	68.60	PREDICTED: uncharacterized protein LOC104595677 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g12670.1	Cp4.1LG05g12670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33622	FAMILY NOT NAMED	coord: 2..88 score: 2.9
None	No IPR available	PANTHER	PTHR33622:SF3	SUBFAMILY NOT NAMED	coord: 2..88 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g12670	Watermelon (97103) v1	cpewmB748
Cp4.1LG05g12670	Watermelon (97103) v1	cpewmB751
Cp4.1LG05g12670	Melon (DHL92) v3.5.1	cpemeB656
Cp4.1LG05g12670	Melon (DHL92) v3.5.1	cpemeB684
Cp4.1LG05g12670	Cucumber (Gy14) v2	cgybcpeB240
Cp4.1LG05g12670	Melon (DHL92) v3.6.1	cpemedB786
Cp4.1LG05g12670	Melon (DHL92) v3.6.1	cpemedB816
Cp4.1LG05g12670	Silver-seed gourd	carcpeB0660
Cp4.1LG05g12670	Silver-seed gourd	carcpeB0255
Cp4.1LG05g12670	Silver-seed gourd	carcpeB0440
Cp4.1LG05g12670	Silver-seed gourd	carcpeB1243
Cp4.1LG05g12670	Cucumber (Chinese Long) v3	cpecucB0879
Cp4.1LG05g12670	Cucumber (Chinese Long) v3	cpecucB0898
Cp4.1LG05g12670	Wax gourd	cpewgoB0932
Cp4.1LG05g12670	Wax gourd	cpewgoB0958
Cp4.1LG05g12670	Cucurbita pepo (Zucchini)	cpecpeB274
Cp4.1LG05g12670	Cucurbita pepo (Zucchini)	cpecpeB309
Cp4.1LG05g12670	Cucurbita pepo (Zucchini)	cpecpeB496
Cp4.1LG05g12670	Cucurbita pepo (Zucchini)	cpecpeB506
Cp4.1LG05g12670	Cucumber (Gy14) v1	cgycpeB0247
Cp4.1LG05g12670	Cucurbita maxima (Rimu)	cmacpeB585
Cp4.1LG05g12670	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g12670	Cucurbita moschata (Rifu)	cmocpeB499
Cp4.1LG05g12670	Cucurbita moschata (Rifu)	cmocpeB534
Cp4.1LG05g12670	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g12670	Wild cucumber (PI 183967)	cpecpiB706
Cp4.1LG05g12670	Cucumber (Chinese Long) v2	cpecuB704
Cp4.1LG05g12670	Bottle gourd (USVL1VR-Ls)	cpelsiB589
Cp4.1LG05g12670	Bottle gourd (USVL1VR-Ls)	cpelsiB605
Cp4.1LG05g12670	Watermelon (Charleston Gray)	cpewcgB634
Cp4.1LG05g12670	Watermelon (Charleston Gray)	cpewcgB662