Cp4.1LG05g11040 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g11040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-binding protein, putative
LocationCp4.1LG05 : 7457250 .. 7465469 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTTAGTTGAAACAAATATATTAAGATTTGAAGTTATATGAATCAAATTGGGACCAAACTAAATTAGGGAATAAATAAGGCTTAAAAATATGTTATTAAAATAAAATAAATAATAAAAAGAAACAGGAGAGGAGGGAGAGAGATGAGATCTGCTCTAGGTGTTTCTTGAATTCCCAGAAAATCTGATTGAAGGTCAGTTGAGCGCGTTATCCACGAATCTATACTTTTTTTTTGTCTGTTTCAATTGTTATTTTGAAGATTTAATCGCAAACAAGAAATTGAAACAAGGAACAAACCGAATGATGGAATCGGTGAGATTCATTTGGTATTTAACTATTGTGTGTGAGAAAGAGGTGTGCTTCTTCTTCTTATTATGTGCAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGTGGGTCTTAGAGCGAGCGAGGAAGAACAGGAGGAGAGTGAGATATTCTTTTTTCCCCTTTAGGGTTCAATTTCATTGCGTTAACTGCCCCAATTCATCATGGATCGGAAGCTTGTGGTTTGTTTTTTCTTTTTCATTTGTTTCTTCTATCAAGTAATTCGGTTAAGGGTTCGATTCGTTTTATTTATTTATTTCGTGAAATTTAGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGTTTGCCTTTTCCCCTATTCCTATGATGCATTCGTACTATCCATTCTTTCTTATGGGTTTTTAAGAAAGCATGCCTTTGTCATGAATTCAGTGATTTTGAAAGTGTGAGGTGCACTGGAGCGTAATAACTTCAAAATAAAAAAGATTTGTAAACACTTTATATAATACATGAACATGAAGATTGTTATGAATAAGAACATAATGAAAATTTTAAGAATTAAAAGCTTTTATTAGAGATTGTGGAGGAAAAATGAAGGTGTTAAGAGTGCTTTTATTTTCTTCCTAAAACATTACTAAAAAAAATTAGTGCTTCAAGCATCGAGGTGCCCACCCCAGCTATCGATACCTGTGCCTCAAGCTGGCCTTATTAAGAGTGCCTAGCTGTTTTGAAGCAATACACCGAGTGTGGGCTTTTCTGTGTGCCTGCCATGGCATGCTTGATCTATTGGCGTTTAGATTGTAGGAATGTATGTGCTGTTTATGTTTGGACGTGCAGAAATATGCTAGGAAGTGAAACATGTTCAGTTTGCAGGAATGAAAATTATTAATTATTAGTTACATTTCAAGAACATAATTTTAAATTAAGTTAAACATTTTCATTATAAAAGTTAAAATCCATATCTTGCCATCTCTTGTTCAGACCCAAGCAAAAACCAAAAATATCTTACAATCTTCATTAGGTACTTACCAAGTAAAAAGACATCTCCAGAAAGTATGATCCAAATCTTTTGATGCTTGCATACAAAAACACACTGTAGATGGCCTAAAGTGTCTCTTTAGGTCGTTTATAAGAAATTTTGTACTTTTCGGTAGGCCTTGTTGTCTTGGATTGAAGCCCTGTTTTGTATAGCTTGTTTGGATTTGGATTGCTTCTCTTGTTGGACTTTGGTTTTAGATGCCCCTCCTACATTCTTGTTTGTTTTGTTAACGAAAGTTGGTTTTCAATAATTTTTTCTAATATATTAATTTATCAGCTTTGTTTTCCCTGGTGGATTGTACATATGAAGACAGTGGATGCTTGTTGTGGCTAATTTTGTGTAGATACATTTTTATTTTCAAGTCCTTTTTTGGTAGTCATATGCTTTTTTTTTTCCTTATATGTCAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGGTAAGACTATCTTCAATATCTTCACTTTTGGTTGACTTGATGCCTGATGCCTTACACCTCCTTGTTGCAGAATGCGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGTTAGTTTCCCTTTTTCTCTCTTTCCCTTTTTTATTTGCCTTCCTTACATACATTTTCCTTGTCTAGAATCCCCTTCATTTTATCTTCTTTTTGAATAAATAAATCATTAAAAGTGCGAGTACTGTCTTTTGATTTGTATGCATACATATTTGTATATGTTTTGAATTGAAAAGCATGTCCTGGAAAATGATCATATTTTCAGGAAAAATTTGTCTCATATTTGTATCATATTTTCTGTTGACAGGAGGAGATGAGAGCACCTCCAAAGAGAGTTACGAGGATATTTGTAGCAAGGATTTCACAATCTGTGACTGAGGCTGCCTTCCGCAGGTAGTTTGGTGTGATTTTGTGCCAGATTCTTGTGCACAATCAATATATATCAGACATTAGTTGAACACGATGGCTACATGTTGGACACTTGTTAGGCACATGTTAAATCCTTGTTAAGCATAATAAATAGGTCTTATTTCACTTGATGGGGGCCGTTCCTTTTGTGGATTCGGTTTTCTTATATGCCTTTTTATTCTTTCATTTTCTCTCAATGAAAGCTTGATTCTTTATTAAAACAAACGTTCTTAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAATAGTAATATAGGACAAAACAATGTACTGAGTTAATACATCAAAATCTTTTTTCCAAGCATACACATAGGCTTACTGACTTCAGATTTGCTGATGGTATACAATATTTATTTCAAAAAGTGTATATTTTAATTAGTGTATTCTTGTCACGTTTGGTCCTGAACTTTTTAGAAAATTCCGTCTTACTGTGTCCATGTTATGTTGTGTGCGTCTCTCCTGTCCATGCTAGAAATTTGATTGGGATTTATCGGTGAAGGCTGAAGAGGAATTGGGAAGAGAACAGGCAACAAAGCTGGAAGTAGAAAAAAAGATTGAATCTGGCCTAAAGAATTCAGGCTATAGATCATTTAAGGAAGTCTGTGGAGAACTGAGAAAGTACAAACCTCTTAATGGAACTTTGTCGCCAGAAACTTTTTGAGCTTGAAATCTGACGTGGAATTATCAGTGAATAGGAGGTAAAGACTAATTTAGAAGAGGACGGGAAAAAAGATGAAAGAAGAAAAATATTGAATCCCCACCAAGAGTATGCAGGTTATAGAACGTCGAAGGAAGTTGTGGAGGCATGAGAGAAATTGAGAACTTCTCAATGAAACTTCTAGCAACTTGAGAGAGAAAGAACTTTGAGGTGGCAGTTGAATGACTATTTGTTAATTTTCTATTCACATCATTACATGTGGGAATGACAGAATGATAATCCTCCGATAAAGTCTAAGGAATGTATGCGTGAGGAAAGAGTGAGGATTGATTTTTTAATTAGTTAGTTAAAGGGGGATGCATCGATGTGTTACGAATTTGTGGGGCTGACATAATAGGAAAGAGGGAGTACTCAAGGGAAAGAAGGGAGCTGGGAGAGGTACGCTTGCTTGGTCGGCAAGTTGGGTGTACTTTGGAGGGAGTTTGCTTGATTGTGTAACATATTGATAAATAAATCTAGCTCCCATGCTTGTATAGCTTATCAAGTATCGAGCAAGAAGCTACACTTTATGGCTTATGTCTTCCCGTCCTCTGACTCTTCCTCCTTGCTGTCCTTGAGTTTTTTCCGCAATTTCTCTAAAAGAGAGGCTTTGGATGTTGTGTGCCTTCTTTCGATTCCTTAGGGGCGATATGTTCTTCGCGGGGGGAGGGACACTAGGTTCTAGTCCCTGGATCCATGTAGGGTCTTCTCTTGTAGCTCTTTCTATTGGTTCAGTCTGGCCTGTTCTCCCTCTTTCTGTGTTTGCTTTCTCCCGGTCTGGAAAGTGCAAATCCCTAAGAGGGTAAAATATTTGTGTGGCAGATTTTACATGAGAGAATCAACACTTTGGACCTGTTTCTATGGTGGTGCATTCTATGTAGGTGTCAGACTGAGTATTTGTATCATCTGTTGTGGGTTGCTCGTTTGTCCGAATTTTTTGGGCTCGTTATTTAGATTCTTATAATTTATGTTGGGTTTGACAGAGGAGGTTCTCCTGGGCTTACTTGTTCGTGAGAAGGACACTGTTTTTTGGCATGCCAGTTTCTCTTGCCATGCCATGGGGGTTTGGCTGGAGAGGAATTGTAGACTTTTTAGAGAGGTGTGGGTGTCGGTCACTTGGCCTTTTTGTAATTATGATCTTGGTTTGATTTTGTTGGATTGAAGTCCCTTTGCATAGTTTATGAGACGTTCTTTTGTGGGTCTTATTTTATCTATACCCATATATTTTATTTTTATTTTCTCAAAGAAAGTGCGGTTTCTTCTACAAAAAATAAATAAATCCATCTCATATCACAAAATTTTGTGTGGCCTTTCTGTTTCAAATGGGGATGTTGCAGGGACAAACATTTTAAAATTTAATTTGGGGATGAACCGTGCTTGCATCTGCCCCTCAAATGTGTCTCAAGTTATTACAATTATTCTATTGATCTTTAATTAACCTTTTCCATTGACAGACGAATAGGAAGTTTCATATTTTCATTAAATGAATTATTTAAACTAATAAATAATAAAATTAATTTTATTGCCTAGAAAAAGTAGGTACCTGCAAGGGAACCTGTTCCTTCAGGGTTTTTAGACATCTCTTAAGAGTCAGAGTCTGTTGACTCAATCCACAATGACTTTGGTAAAGCCTTCAAGCTATATACCCAAATGCAACTTTGTAAGAATTTCATAATCTGATGGTTATCGGAGAGAAGATTGTTAGTATCCTTCGGATGGCACTAAGGCCTTTTAAGAATCCACTAAGACACTATTCAAGCATCTCGTAGAAGAGTTGCAACATTTGTCTTAAGAATTTGATTCATGGTTTTTATTTATGACTTGATGACCTTTTTTTTGTTATTTGGTTTACAAATTCTTGATGGAAATGAACTTCATGTTTGTTGCAGTCATTTTGAGAAATATGGAGAAATAACAGATCTTTACATGCCGAAGGTACGTTTTCCTTTCACTAAACTAGGAAATTAGTTCTGTGGATTCTCTATTCCTATTTTCACTTATCAGGTGTACATGTACTACGTGAATTGGAAAATATGGGTCACCCATGTTTTTGTGCAGTGTATATTAACATCTTTTAACTTTTGTTAATTATTCAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAATTCAGGTTGGATCATCTTTTTATATTGATATAAGATATGATTGCAGAGTTCAAGTTGGCAACTTTTGGTTTGTTTCTTCAATTTCTGAAAATATCCGCCCAAATACGGATCCTTTTAATTGTTTACTAGTGCAGTAGTTGAGTTTTTCTACACTGTTCAAAGATTTCCGGATACATAAGTACAAAGATTGGTTTATGGGAAAACATTTTCTCTCTGCTACCACTCTCAAACAACTCACTCTCTTTCATTTTTCAATTTCATCTCCTTCTTCACTCTTCTTTCCACTGCTTTTTTCTATAACTATTCACTTACTTCTTGTTTTCCTTTCATTTTTTTCTTGAAACTCTTTCTTTTTTTTTTCTCCAATTTCAATTGATTAGAAAATACATCTTCAGAATTCAAAGGTACAAAATGATTTTTTTACCATCTTTCCACAATCTAGCTTGAATAAGGCCGAACTCTTCAAAGAGCAAGCCAGTTTAAGTGAATATAATTCTACACAGAGCAAGCCACTTCTAAATTGAGTCATCCCATAATTGAACTCTTCAAAGAGCAAGCCTGTTTAAGTGAACTTAACCTAAGCTCCATGGTAACTTAAATCTTTTACACATTGACCTTGCACATGAAATTGAGTTTGAATCTAGACTAACGATTTTGAAGGTAAAGAATGAATGTTTCTTGTTTTGGATCAAAACTTGTGGAACACCATGGTCACTATCATTTGCTCAGTAGAGGAGGGGGTGGGAAGGGACAAGCAGTGGGGGAAGAGGAGAGGGACATTTAAAACTGTTCATGGTTCTTTTTCTTTCCTCTCGCCGACTAAGTGTGCTGTCCTTAAGAAAGTTCCAGAGAGGCTTTTTTATCCTCCTGCAGTGTACCTTGGTTTTCCTTCTAATTTTGTTTTATTGACAATCTTCATTGTAATGTTTTCACATTAATATAAAAGTTCAACCATGCTATTTCGTGGTTGCCGATTTCCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAACTAGGAGGTTCTGCAGTGGTTGTTGACAGAGCGACCCCCAAGGCAAGATTTTGCTGTTATCTTTATAACACCATATTTACCTTTTGATGGATCTTTTTTTTTCTTTTTTTTTTGAAGACCGAAGGATTCTTTTTAGTTTGTCATGATTTTGTTCGTCTAATTGAGATCAATATACTATTTTTCCAGGATGATGATTTCAGACCCATAGGGAAAATGCCGCGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGTATGTATCTCTGATAGTATCCTTTTTTATGTGATGCTTGGTCTTGGTGAATATTGTTATGATGATTCCCCATTTCATTGGATCAGGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTCGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGTAAATTAGATTTAGTTAATGCTCCACTTTTTATGAGTGACTGAATTGAGATAGCATAACGGTTCAGTTGTTACTGACGAATGTAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCACGAGATTTGTGGACAACAGGTATTCTACTGCATGTCACTTTCCTCACTAGAAGGGCATTGCCAGCGACTGTTCTTTTCTGCCTTTTGCGAGTAATGGTTACTAGTTATTAGTTATATGATTATTACGCAAGCTTCAATCTTGGGTTATGAATCTTATCTCACAATTGGAATCTGCAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTGTGATGAGTAGCGCGGCAGAATCTTTTGGGAGCTATGGTGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTAGACTTTGATGATGTAAGTGGCTCTGTTTCTATTTGACTTATATTCAAGTTGGTTAAAATTTAGGTAGTGATTGATAGGTTGTCCACCACATTTAGCGAGCTTTACATTTACTGGTGCCTCTCAGACCCTCCCAAGGGCCCTACAATTAGGATTATAAACATTTTGATTAAAGATTCTTTAGAAATTATTTGAAGGTTTGGTTTCTGAACTTTGAAAGTGTTTTATGATAAGCATTTTTTCGCAAAGTACTTTTGAGTGCTTTTGACGAGTCAAAAGTCAAAAGCATTTAAAAAGGTTACTTCCAACATGATTTGTTTTTTCTTTAAAGCTTTTTTAAAGATTAATGAGTTTATATTGTGCAGTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCGTACTGATGAGTGACAAACCAGCATTGAATTAGTAGTGATGGCTGATGGCTTGATAAATCAACGGCATGAATTGCCATATTTATGGAGAGTCGATATCTTTCAATGTCTGATTATTTGGTTTCTTTTGGTTTATTGTTTTTAACTGTCTCAACACCATTCCTTAGCTGAAACATGGATCAATTGGGGTCGTCGTGGTGTGGGATCGGGATCGGGATCAGGAGGGTATGTCGGCTGTATGAATGTTTGGTTAGTAGTTCTTAGTGAGTTATATTCTTCTCTAACTCTACTTTAAGAATATTCATTTTATAACATCTCTAGGATGGTTTGGTTATCATCGAACAATTGATCGACTACTGAACGCTGGATGGCCTTTTTCTAGTTGTGTTCTTTTTCTTTGAATCAGTCCTACAATGCTTTCAGATCCTTCCAATTTGACTAAATCCATGGCCAAATAAGAGCACTCCCTCAT

mRNA sequence

TATTTTAGTTGAAACAAATATATTAAGATTTGAAGTTATATGAATCAAATTGGGACCAAACTAAATTAGGGAATAAATAAGGCTTAAAAATATGTTATTAAAATAAAATAAATAATAAAAAGAAACAGGAGAGGAGGGAGAGAGATGAGATCTGCTCTAGGTGTTTCTTGAATTCCCAGAAAATCTGATTGAAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGTGGGTCTTAGAGCGAGCGAGGAAGAACAGGAGGAGAGTGAGATATTCTTTTTTCCCCTTTAGGGTTCAATTTCATTGCGTTAACTGCCCCAATTCATCATGGATCGGAAGCTTGTGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGAATGCGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGAAAGAGGGAGTACTCAAGGGAAAGAAGGGAGCTGGGAGAGTCATTTTGAGAAATATGGAGAAATAACAGATCTTTACATGCCGAAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAATTCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAACTAGGAGGTTCTGCAGTGGATGATGATTTCAGACCCATAGGGAAAATGCCGCGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTCGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCACGAGATTTGTGGACAACAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCGTACTGATGAGTGACAAACCAGCATTGAATTAGTAGTGATGGCTGATGGCTTGATAAATCAACGGCATGAATTGCCATATTTATGGAGAGTCGATATCTTTCAATGTCTGATTATTTGGTTTCTTTTGGTTTATTGTTTTTAACTGTCTCAACACCATTCCTTAGCTGAAACATGGATCAATTGGGGTCGTCGTGGTGTGGGATCGGGATCGGGATCAGGAGGGTATGTCGGCTGTATGAATGTTTGGTTAGTAGTTCTTAGTGAGTTATATTCTTCTCTAACTCTACTTTAAGAATATTCATTTTATAACATCTCTAGGATGGTTTGGTTATCATCGAACAATTGATCGACTACTGAACGCTGGATGGCCTTTTTCTAGTTGTGTTCTTTTTCTTTGAATCAGTCCTACAATGCTTTCAGATCCTTCCAATTTGACTAAATCCATGGCCAAATAAGAGCACTCCCTCAT

Coding sequence (CDS)

ATGGATCGGAAGCTTGTGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGAATGCGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGAAAGAGGGAGTACTCAAGGGAAAGAAGGGAGCTGGGAGAGTCATTTTGAGAAATATGGAGAAATAACAGATCTTTACATGCCGAAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAATTCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAACTAGGAGGTTCTGCAGTGGATGATGATTTCAGACCCATAGGGAAAATGCCGCGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTCGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCACGAGATTTGTGGACAACAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCGTACTGA

Protein sequence

MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSNEHFLGNRMLEVKVATPKERGSTQGKEGSWESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAVDDDFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFWGYGVGGGRPSRADWRYRPY
Homology
[Close]
BLAST of Cp4.1LG05g11040 vs. Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.9e-19
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 

Query: 2   DRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL 61
           D K+ + G+ W+   + LRDY  +FGE+ DC VM++ +TGRSRGFG++TF   +     +
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221

Query: 62  SNEHFLGNRMLEVKVATPKERGSTQGK-----------EGSWESHFEKYGEITDLYMPKD 121
           S EH L  ++++ K A P+E      K           E  + + F ++G + D  +  D
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281

Query: 122 QGSKIHRGIGFITFAN 127
           + +   RG GF+T+ N
Sbjct: 282 KDTGRPRGFGFVTYEN 297

[Close]
BLAST of Cp4.1LG05g11040 vs. Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.7e-18
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 1 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           K+ + G+ W    + LRDY SKFGE+ +C+VM++ +T RSRGFG+VTFA        L  
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81

Query: 64  EHF-LGNRMLEVKVATPKE---RGSTQGKE------------GSWESHFEKYGEITDLYM 123
            H  L ++ ++ KVA P+    +  T+ K+               + +FE++G++ D  +
Sbjct: 82  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141

Query: 124 PKDQGSKIHRGIGFITFAN 127
             D+ +  HRG GF+TF N
Sbjct: 142 MFDKTTNRHRGFGFVTFEN 160

[Close]
BLAST of Cp4.1LG05g11040 vs. Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.7e-18
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 1 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           K+ + G+ W    + LRDY SKFGE+ +C+VM++ +T RSRGFG+VTFA        L  
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81

Query: 64  EHF-LGNRMLEVKVATPKE---RGSTQGKE------------GSWESHFEKYGEITDLYM 123
            H  L ++ ++ KVA P+    +  T+ K+               + +FE++G++ D  +
Sbjct: 82  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141

Query: 124 PKDQGSKIHRGIGFITFAN 127
             D+ +  HRG GF+TF N
Sbjct: 142 MFDKTTNRHRGFGFVTFEN 160

[Close]
BLAST of Cp4.1LG05g11040 vs. Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-15
Identity = 74/246 (30.08%), Postives = 110/246 (44.72%), Query Frame = 1 

Query: 3   RKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           RKL + G+ ++   E LR +  ++G L DC+VM++ +T RSRGFG+VT+AT E+   A+ 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 63  SNEHFLGNRMLEVKVATPKERGSTQG-------------KEGSWESH----FEKYGEITD 122
           +  H +  R++E K A  +E     G             KE + E H    FE+YG+I  
Sbjct: 74  TTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 123 LYMPKDQGSKIHRGIGFITFAN---------------SGTKCSNYYLVDSVENLMAETHE 182
           + +  D+GS   RG  F+TF +                G  C     +   E   A + +
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQ 193

Query: 183 LG-------GSAVDDDFRPIGKMPRGG-----GGGGGGGGGGGYG----AYNAYISAATR 200
            G       G    D F       RGG     GG GG  GGGGYG     YN + +  + 
Sbjct: 194 RGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSN 253

[Close]
BLAST of Cp4.1LG05g11040 vs. Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-15
Identity = 62/200 (31.00%), Postives = 99/200 (49.50%), Query Frame = 1 

Query: 3   RKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           RKL + G+ ++   E LR +  ++G L DC+VM++ +T RSRGFG+VT+AT E+   A+ 
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 63  SNEHFLGNRMLEVKVATPKERGSTQG-------------KEGSWESH----FEKYGEITD 122
           +  H +  R++E K A  +E     G             KE + E H    FE+YG+I  
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 123 LYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAVDDDFRPIGK 182
           + +  D+GS   RG  F+TF +  +   +  ++     +     E+  +    +      
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDS--VDKIVIQKYHTVNGHNCEVRKALCKQEMASASS 193

[Close]
BLAST of Cp4.1LG05g11040 vs. TrEMBL
Match: A0A0A0LMN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285910 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 1.4e-151
Identity = 290/387 (74.94%), Postives = 302/387 (78.04%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWD+DTEGLR+YMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LS+EHFLGNRM+EVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSK HRGIGFITFA+S          DSVENLMA+THELGGS V        DD
Sbjct: 121 YMPKDQGSKTHRGIGFITFASS----------DSVENLMADTHELGGSNVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMP+G     GGGGGGGYGAYNAYISAATRYAALGAPTLYDHP SVY GRREFR
Sbjct: 181 DFRPIGKMPQG-----GGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVY-GRREFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDD----AGAAGPSGPF----------------------- 331
           VSRRSHEICGQQVAIDSATPLDD    AGA+G SG F                       
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMY 360

[Close]
BLAST of Cp4.1LG05g11040 vs. TrEMBL
Match: W9QU11_9ROSA (Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_011062 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 9.5e-137
Identity = 257/381 (67.45%), Postives = 285/381 (74.80%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWD+DT+GLRDYM+KFGELEDCIVMKERSTGRSRGFGYVTFA++EDAKNA
Sbjct: 1   MERKLVVLGIPWDVDTDGLRDYMTKFGELEDCIVMKERSTGRSRGFGYVTFASEEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGKE---------------GSWESHFEKYGEITDL 120
           LS EHFL NRMLEVKVATPKE      K+                +++SHFEKYGEITDL
Sbjct: 61  LSGEHFLRNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVAKATFQSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGS  HRGIGFITFAN+          +SV+NLMAETHELGGS V        +D
Sbjct: 121 YMPKDQGSTTHRGIGFITFANA----------ESVDNLMAETHELGGSTVVVDRATPKED 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRR--E 240
           DFRPIG+M +GG           YGAYNAYISAATRYAALGAPTLYDHP ++YG  R   
Sbjct: 181 DFRPIGRMAQGG-----------YGAYNAYISAATRYAALGAPTLYDHPGTMYGNGRGES 240

Query: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300
            RG+GKKIF+GRLPQEA+ +DLRQYFGRFGRILDVY+P+DPKRSGHRGFGFVTFAEDGVA
Sbjct: 241 TRGLGKKIFVGRLPQEATIEDLRQYFGRFGRILDVYIPRDPKRSGHRGFGFVTFAEDGVA 300

Query: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGP------------SGPF------------- 331
           DRVSRRSHEICGQQVAID+ATP+DDAG +G              GP              
Sbjct: 301 DRVSRRSHEICGQQVAIDTATPVDDAGTSGNFVVNSAEAFGGYGGPMRTYGRMYGSLDFD 360

[Close]
BLAST of Cp4.1LG05g11040 vs. TrEMBL
Match: A0A061DGB0_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_000623 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 3.0e-135
Identity = 254/377 (67.37%), Postives = 279/377 (74.01%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPW++DTEGLR YMSKFG+LEDCIVMKERSTGRSRGFGYVTFA+ +DAKN 
Sbjct: 1   MDRKLVVLGIPWEVDTEGLRKYMSKFGDLEDCIVMKERSTGRSRGFGYVTFASADDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           LS EHFLG RMLEVK+ATPKE      K               E ++ SHFE+YGEITDL
Sbjct: 61  LSIEHFLGERMLEVKIATPKEEMRAPAKKVTRIFVARIPPSVDESTFRSHFEEYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQ SK HRGIGFITFA++          DSVENLM +THELGGS V        +D
Sbjct: 121 YMPKDQASKAHRGIGFITFASA----------DSVENLMTDTHELGGSTVVVDRATPKED 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DF+PIG+M +GG           YGAYNAYISAATRYAALGAPTLYDHP  VYG     R
Sbjct: 181 DFKPIGRMSQGG-----------YGAYNAYISAATRYAALGAPTLYDHPGPVYGRGESTR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEA+A+DLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFVGRLPQEANAEDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAA---GPSGPF---------------------WGY 331
           VSRRSHEICGQQVAIDSATP+DDAG +    P+GP+                     WGY
Sbjct: 301 VSRRSHEICGQQVAIDSATPVDDAGPSFMMNPAGPYRGFGGPMRPFGRMYGGLHFDDWGY 356

[Close]
BLAST of Cp4.1LG05g11040 vs. TrEMBL
Match: A0A061DGF8_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 3 OS=Theobroma cacao GN=TCM_000623 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 4.0e-135
Identity = 254/378 (67.20%), Postives = 279/378 (73.81%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPW++DTEGLR YMSKFG+LEDCIVMKERSTGRSRGFGYVTFA+ +DAKN 
Sbjct: 1   MDRKLVVLGIPWEVDTEGLRKYMSKFGDLEDCIVMKERSTGRSRGFGYVTFASADDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           LS EHFLG RMLEVK+ATPKE      K               E ++ SHFE+YGEITDL
Sbjct: 61  LSIEHFLGERMLEVKIATPKEEMRAPAKKVTRIFVARIPPSVDESTFRSHFEEYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQ SK HRGIGFITFA++          DSVENLM +THELGGS V        +D
Sbjct: 121 YMPKDQASKAHRGIGFITFASA----------DSVENLMTDTHELGGSTVVVDRATPKED 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DF+PIG+M +GG           YGAYNAYISAATRYAALGAPTLYDHP  VYG     R
Sbjct: 181 DFKPIGRMSQGG-----------YGAYNAYISAATRYAALGAPTLYDHPGPVYGRGESTR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEA+A+DLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFVGRLPQEANAEDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAA---GPSGPF----------------------WG 331
           VSRRSHEICGQQVAIDSATP+DDAG +    P+GP+                      WG
Sbjct: 301 VSRRSHEICGQQVAIDSATPVDDAGPSFMMNPAGPYRGFGGPMRPFGRMYGGLHFDDQWG 357

[Close]
BLAST of Cp4.1LG05g11040 vs. TrEMBL
Match: D7SVX4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00600 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 2.0e-134
Identity = 256/380 (67.37%), Postives = 281/380 (73.95%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MD KLVVLGIPWD+DT+GLRDYMSKFGEL+D IVMKERSTGRSRGFGYVTF + EDAK  
Sbjct: 1   MDNKLVVLGIPWDVDTDGLRDYMSKFGELKDVIVMKERSTGRSRGFGYVTFGSVEDAKKV 60

Query: 61  LSNEHFLGNRMLEVKVATPKE----------------RGSTQGKEGSWESHFEKYGEITD 120
           LS+EHFLGNRMLEVKVATPKE                R      E ++ S+FE YGEITD
Sbjct: 61  LSSEHFLGNRMLEVKVATPKEEMMRAPIKKVTRIFVARIPDSVNEAAFRSYFETYGEITD 120

Query: 121 LYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------D 180
           LYMPKD GSK HRGIGFITFA++          +SV+NLM ETHELGGSAV        +
Sbjct: 121 LYMPKDHGSKGHRGIGFITFASA----------ESVDNLMVETHELGGSAVVVDRATPKE 180

Query: 181 DDFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREF 240
           ++FRP+ ++P+GG           YGAYNAYI+AATRYAALGAPTLYDHP SVYG     
Sbjct: 181 EEFRPVSRVPQGG-----------YGAYNAYITAATRYAALGAPTLYDHPGSVYGRGEST 240

Query: 241 RGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVAD 300
           R MGKKIF+GRLPQEASA+DLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVAD
Sbjct: 241 RAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVAD 300

Query: 301 RVSRRSHEICGQQVAIDSATPLDDAGAAG--------PSGPF------------------ 331
           RVSRRSHEICGQQVAIDSATPLDDAG++G        P G F                  
Sbjct: 301 RVSRRSHEICGQQVAIDSATPLDDAGSSGNFMMDSAEPFGGFGGPMRTYGRMYGSLDFDD 359

[Close]
BLAST of Cp4.1LG05g11040 vs. TAIR10
Match: AT4G36960.1 (AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 431.8 bits (1109), Expect = 3.8e-121
Identity = 238/389 (61.18%), Postives = 270/389 (69.41%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWDID++GL+DYMSKFG+LEDCIVMK+RSTGRSRGFGYVTFA+ EDAKNA
Sbjct: 1   MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           L  EHFLGNR+LEVKVATPKE      K               E  + SHFE+YGEITDL
Sbjct: 61  LKGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKD  SK HRGIGFITF+++          DSVE+LM +TH+LGG+ V        +D
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSA----------DSVEDLMEDTHDLGGTTVAVDRATPKED 180

Query: 181 DFRP----IGKMPRGGGG-GGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYG- 240
           D  P    + +M R      GG G  GGYGAY+AYISAATRYAALGAPTLYD+P + YG 
Sbjct: 181 DHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGR 240

Query: 241 GRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAE 300
           G    RG+G KIF+GRLPQEAS DDLR YFGRFG I D Y+PKDPKRSGHRGFGFVTFAE
Sbjct: 241 GEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 300

Query: 301 DGVADRVSRRSHEICGQQVAIDSATPLDDAGAA----------------GPSGPF----- 331
           +GVADRV+RRSHEICGQ+VAIDSATPLD+AG +                G  GP      
Sbjct: 301 NGVADRVARRSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGR 360

[Close]
BLAST of Cp4.1LG05g11040 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-20
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 1 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL + GI WD D E L++Y  K+G+L + ++M++R+TGR+RGFG++ FA    A+  + +
Sbjct: 16  KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75

Query: 64  EHFLGNRMLEVKVATPKE------------------RGSTQG----------------KE 123
           +H +  R +E K A P++                   G   G                 E
Sbjct: 76  KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135

Query: 124 GSWESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-H 157
             ++++F+++G I D+ +  D  ++  RG GFITF +           +SV+ ++ +T H
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSE----------ESVDMVLHKTFH 193

[Close]
BLAST of Cp4.1LG05g11040 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-17
Identity = 63/209 (30.14%), Postives = 105/209 (50.24%), Query Frame = 1 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL + GI WD + E L++Y S FGE+ + +++K+R+TGR+RGFG+V FA    A+  ++ 
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 64  EHFLGNRMLEVKVATPKE-------------RGSTQG----------------KEGSWES 123
           +H +  R++E K A P++             +GS  G                 E  +++
Sbjct: 67  KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126

Query: 124 HFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-HELGGS 183
           +FE++G  TD+ +  D  ++  RG GFIT+ +           ++VE ++ +T HEL G 
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE----------EAVEKVLLKTFHELNGK 186

[Close]
BLAST of Cp4.1LG05g11040 vs. TAIR10
Match: AT5G55550.3 (AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-17
Identity = 62/224 (27.68%), Postives = 107/224 (47.77%), Query Frame = 1 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL + GI WD D E LRDY S +G++ + ++M++R+TGR+RGFG++ FA    ++  + +
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 64  EHFLGNRMLEVKVATPKER-------------------GSTQGK------------EGSW 123
           +H +  R +E K A P++                    G  + K            E  +
Sbjct: 67  KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126

Query: 124 ESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAET-HELG 183
           +++F+++G I D+ +  D  ++  RG GFITF +           D+V+ ++ +T HEL 
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD----------DAVDRVLHKTFHELN 186

Query: 184 GS------AVDDDFRPIGKMPRGGGGGGGGGGGGGYGAYNAYIS 190
           G       AV  +  P+  +      G   GGG      N+Y +
Sbjct: 187 GKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFN 220

[Close]
BLAST of Cp4.1LG05g11040 vs. TAIR10
Match: AT5G47620.4 (AT5G47620.4 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 81.6 bits (200), Expect = 9.7e-16
Identity = 55/203 (27.09%), Postives = 91/203 (44.83%), Query Frame = 1 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSN 63
           KL + GI W+   + LRDY   FGE+ + ++MK+R+TGR+RGFG+V FA    A+  +  
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 64  EHFLGNRML----------------------EVKVATP--------KERGSTQGK----- 123
           +H +  ++L                      E K A P        K   S QG      
Sbjct: 67  KHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN 126

Query: 124 --------------EGSWESHFEKYGEITDLYMPKDQGSKIHRGIGFITFANSGTKCSNY 157
                         E  ++ +F ++G ITD+ +  D  ++  RG GFI++ +        
Sbjct: 127 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE------- 186

[Close]
BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: gi|778670030|ref|XP_011649346.1| (PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 2.0e-151
Identity = 290/387 (74.94%), Postives = 302/387 (78.04%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWD+DTEGLR+YMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LS+EHFLGNRM+EVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSK HRGIGFITFA+S          DSVENLMA+THELGGS V        DD
Sbjct: 121 YMPKDQGSKTHRGIGFITFASS----------DSVENLMADTHELGGSNVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMP+G     GGGGGGGYGAYNAYISAATRYAALGAPTLYDHP SVY GRREFR
Sbjct: 181 DFRPIGKMPQG-----GGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVY-GRREFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDD----AGAAGPSGPF----------------------- 331
           VSRRSHEICGQQVAIDSATPLDD    AGA+G SG F                       
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMY 360

[Close]
BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: gi|659115957|ref|XP_008457826.1| (PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis melo])

HSP 1 Score: 541.2 bits (1393), Expect = 1.3e-150
Identity = 288/387 (74.42%), Postives = 300/387 (77.52%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWD+DTEGLR+YMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKE---------------RGSTQGKEGSWESHFEKYGEITDL 120
           LS+EHFLGNRM+EVKVATPKE               R S    E ++ SHFEKYGEITDL
Sbjct: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSK HRGIGFITFA+S          DSVENLMA+THELGGS V        DD
Sbjct: 121 YMPKDQGSKTHRGIGFITFASS----------DSVENLMADTHELGGSTVVVDRATPKDD 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIGKMP+       GGGGGGYGAYNAYISAATRYAALGAPTLYDHP SVY GRREFR
Sbjct: 181 DFRPIGKMPQ-------GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVY-GRREFR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDD----AGAAGPSGPF----------------------- 331
           VSRRSHEICGQQVAIDSATPLDD    AGA+G SG F                       
Sbjct: 301 VSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMY 360

[Close]
BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: gi|1009145034|ref|XP_015890115.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Ziziphus jujuba])

HSP 1 Score: 495.4 bits (1274), Expect = 8.0e-137
Identity = 258/379 (68.07%), Postives = 283/379 (74.67%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWD+DT+GLR+YMSKFGELEDCIVMKERSTGRSRGFGYVTFA+ EDAKNA
Sbjct: 1   MERKLVVLGIPWDVDTDGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           LS EHFLGNRMLEVKVATPKE      K               + ++ SHFEKYGEITDL
Sbjct: 61  LSGEHFLGNRMLEVKVATPKEEMRVPAKKVTRIFVARIPQSVTQATFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGSK+HRGIGFITFAN+          +SV++LMAETHELGGS V        +D
Sbjct: 121 YMPKDQGSKMHRGIGFITFANA----------ESVDSLMAETHELGGSTVVVDRATPKED 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DFRPIG+M +GG           YGAYNAYISAATRYAALGAPTLYDHP SVYG     R
Sbjct: 181 DFRPIGRMAQGG-----------YGAYNAYISAATRYAALGAPTLYDHPGSVYGRGESSR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           G+GKKIF+GRLPQEA+ +DLRQYFGRFGRILDVY+P+DPKR+GHRGFGFVTFAEDGVADR
Sbjct: 241 GLGKKIFVGRLPQEATIEDLRQYFGRFGRILDVYIPRDPKRTGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGA------------AGPSGPF--------------W 331
           VSRRSHEICGQQVAID+ATPLDDAGA             G  GP               W
Sbjct: 301 VSRRSHEICGQQVAIDTATPLDDAGAGANFILNSAESFGGYGGPMRTYGRMYGSLDFDDW 358

[Close]
BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: gi|703088843|ref|XP_010093639.1| (Uncharacterized RNA-binding protein [Morus notabilis])

HSP 1 Score: 494.6 bits (1272), Expect = 1.4e-136
Identity = 257/381 (67.45%), Postives = 285/381 (74.80%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWD+DT+GLRDYM+KFGELEDCIVMKERSTGRSRGFGYVTFA++EDAKNA
Sbjct: 1   MERKLVVLGIPWDVDTDGLRDYMTKFGELEDCIVMKERSTGRSRGFGYVTFASEEDAKNA 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGKE---------------GSWESHFEKYGEITDL 120
           LS EHFL NRMLEVKVATPKE      K+                +++SHFEKYGEITDL
Sbjct: 61  LSGEHFLRNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVAKATFQSHFEKYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQGS  HRGIGFITFAN+          +SV+NLMAETHELGGS V        +D
Sbjct: 121 YMPKDQGSTTHRGIGFITFANA----------ESVDNLMAETHELGGSTVVVDRATPKED 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRR--E 240
           DFRPIG+M +GG           YGAYNAYISAATRYAALGAPTLYDHP ++YG  R   
Sbjct: 181 DFRPIGRMAQGG-----------YGAYNAYISAATRYAALGAPTLYDHPGTMYGNGRGES 240

Query: 241 FRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVA 300
            RG+GKKIF+GRLPQEA+ +DLRQYFGRFGRILDVY+P+DPKRSGHRGFGFVTFAEDGVA
Sbjct: 241 TRGLGKKIFVGRLPQEATIEDLRQYFGRFGRILDVYIPRDPKRSGHRGFGFVTFAEDGVA 300

Query: 301 DRVSRRSHEICGQQVAIDSATPLDDAGAAGP------------SGPF------------- 331
           DRVSRRSHEICGQQVAID+ATP+DDAG +G              GP              
Sbjct: 301 DRVSRRSHEICGQQVAIDTATPVDDAGTSGNFVVNSAEAFGGYGGPMRTYGRMYGSLDFD 360

[Close]
BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match: gi|590704825|ref|XP_007047267.1| (RNA-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 489.6 bits (1259), Expect = 4.4e-135
Identity = 254/377 (67.37%), Postives = 279/377 (74.01%), Query Frame = 1 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPW++DTEGLR YMSKFG+LEDCIVMKERSTGRSRGFGYVTFA+ +DAKN 
Sbjct: 1   MDRKLVVLGIPWEVDTEGLRKYMSKFGDLEDCIVMKERSTGRSRGFGYVTFASADDAKNV 60

Query: 61  LSNEHFLGNRMLEVKVATPKERGSTQGK---------------EGSWESHFEKYGEITDL 120
           LS EHFLG RMLEVK+ATPKE      K               E ++ SHFE+YGEITDL
Sbjct: 61  LSIEHFLGERMLEVKIATPKEEMRAPAKKVTRIFVARIPPSVDESTFRSHFEEYGEITDL 120

Query: 121 YMPKDQGSKIHRGIGFITFANSGTKCSNYYLVDSVENLMAETHELGGSAV--------DD 180
           YMPKDQ SK HRGIGFITFA++          DSVENLM +THELGGS V        +D
Sbjct: 121 YMPKDQASKAHRGIGFITFASA----------DSVENLMTDTHELGGSTVVVDRATPKED 180

Query: 181 DFRPIGKMPRGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFR 240
           DF+PIG+M +GG           YGAYNAYISAATRYAALGAPTLYDHP  VYG     R
Sbjct: 181 DFKPIGRMSQGG-----------YGAYNAYISAATRYAALGAPTLYDHPGPVYGRGESTR 240

Query: 241 GMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300
           GMGKKIF+GRLPQEA+A+DLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR
Sbjct: 241 GMGKKIFVGRLPQEANAEDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADR 300

Query: 301 VSRRSHEICGQQVAIDSATPLDDAGAA---GPSGPF---------------------WGY 331
           VSRRSHEICGQQVAIDSATP+DDAG +    P+GP+                     WGY
Sbjct: 301 VSRRSHEICGQQVAIDSATPVDDAGPSFMMNPAGPYRGFGGPMRPFGRMYGGLHFDDWGY 356

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YHKF_SCHPO3.9e-1933.09Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
MSI2H_HUMAN9.7e-1834.53RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1[more]
MSI2H_MOUSE9.7e-1834.53RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1[more]
RA1L2_HUMAN1.6e-1530.08Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 P... [more]
ROA1_RAT2.6e-1531.00Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 ... [more]
BLAST of Cp4.1LG05g11040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMN9_CUCSA1.4e-15174.94Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285910 PE=4 SV=1[more]
W9QU11_9ROSA9.5e-13767.45Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_011062 PE=4 SV=1[more]
A0A061DGB0_THECC3.0e-13567.37RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_000623 PE=4 SV=1[more]
A0A061DGF8_THECC4.0e-13567.20RNA-binding (RRM/RBD/RNP motifs) family protein isoform 3 OS=Theobroma cacao GN=... [more]
D7SVX4_VITVI2.0e-13467.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00600 PE=4 SV=... [more]
BLAST of Cp4.1LG05g11040 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G36960.13.8e-12161.18 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.13.8e-2028.72 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G07810.21.8e-1730.14 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.31.8e-1727.68 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G47620.49.7e-1627.09 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG05g11040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778670030|ref|XP_011649346.1|2.0e-15174.94PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis sativus][more]
gi|659115957|ref|XP_008457826.1|1.3e-15074.42PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis melo][more]
gi|1009145034|ref|XP_015890115.1|8.0e-13768.07PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Ziziphus jujuba][more]
gi|703088843|ref|XP_010093639.1|1.4e-13667.45Uncharacterized RNA-binding protein [Morus notabilis][more]
gi|590704825|ref|XP_007047267.1|4.4e-13567.37RNA-binding family protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11040.1Cp4.1LG05g11040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..71
score: 4.8E-15coord: 223..277
score: 8.3E-13coord: 94..127
score: 2.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 4..75
score: 8.9E-22coord: 222..293
score: 1.1
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 3..79
score: 16.517coord: 221..297
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 93..178
score: 1.6E-8coord: 220..301
score: 1.6E-18coord: 3..85
score: 3.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 221..322
score: 7.39E-20coord: 3..127
score: 8.88
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 220..325
score: 2.0E-47coord: 4..125
score: 2.0
NoneNo IPR availablePANTHERPTHR24012:SF489SUBFAMILY NOT NAMEDcoord: 220..325
score: 2.0E-47coord: 4..125
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11040Cucsa.366860Cucumber (Gy14) v1cgycpeB0976
Cp4.1LG05g11040CmaCh02G005760Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g11040CmoCh02G005840Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g11040Cla020192Watermelon (97103) v1cpewmB732
Cp4.1LG05g11040Csa2G285910Cucumber (Chinese Long) v2cpecuB708
Cp4.1LG05g11040ClCG02G012740Watermelon (Charleston Gray)cpewcgB653
Cp4.1LG05g11040CSPI02G14290Wild cucumber (PI 183967)cpecpiB710
Cp4.1LG05g11040Lsi10G005620Bottle gourd (USVL1VR-Ls)cpelsiB595
Cp4.1LG05g11040CsaV3_2G016830Cucumber (Chinese Long) v3cpecucB0884
Cp4.1LG05g11040CsGy2G014170Cucumber (Gy14) v2cgybcpeB245
Cp4.1LG05g11040Carg11646Silver-seed gourdcarcpeB1476
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g11040Wax gourdcpewgoB0952
Cp4.1LG05g11040Cucumber (Gy14) v1cgycpeB0666
Cp4.1LG05g11040Cucurbita maxima (Rimu)cmacpeB583
Cp4.1LG05g11040Cucurbita moschata (Rifu)cmocpeB532
Cp4.1LG05g11040Melon (DHL92) v3.5.1cpemeB660
Cp4.1LG05g11040Melon (DHL92) v3.5.1cpemeB663
Cp4.1LG05g11040Melon (DHL92) v3.6.1cpemedB791
Cp4.1LG05g11040Melon (DHL92) v3.6.1cpemedB794
Cp4.1LG05g11040Melon (DHL92) v3.6.1cpemedB809