Cp4.1LG05g10940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g10940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHeterogeneous nuclear ribonucleoprotein
LocationCp4.1LG05 : 7221084 .. 7222121 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTGATGCGGACCCATCCCACCGCAAGATTTTTGTTCACGGGCTCGGATGGGATACCAATACGGAAACTTTGAACAACGTGTTTAAGCAATATGGGGAGATTGAGGACTCCAAAGCTGTGTGTGATAAGGTCTCTGGGAAGTCCAAGGGTTACGGTTTCATCCTCTTCAAGAAGCGTAGTGGGGCTCGAAAAGCACTGAAGGAACCCCAGAAGAAGATTGGCAATAGGATGACTGCCTGTCAGTTGGCTTCGGTTGGGCCTGTTCCATCGTCGAGTGCGGCGGTAGTAACCCCTCAAGCACCACCTGCTTCGGAATATACTCAGAGGAAGATTTATGTGAGCAATGTTGGAGCTGATGTAGACCCCCAGAAGTTGCTAACTTTCTTTTCCCAGTTCGGTGAAGTTGATGAAGGACCATTGGGGCTTGACAAGGTGACAGGCAAGCCTAAAGGTTTCTGTCTATTTGTGTACAAGACGATAGAAAGTGCTAAGAGGGCTTTGGAGGAGCCCCACAAGAACTTTGAGGGTCATATGTTGCATTGCCAGAGGGCCATCGACGGTCCCAAGCCAGGGAAGTCTCAGCACCAGCATCATGTACAAAATGCTCCGTTTCAGAGGAATAAGAATCCGAATTATGCAGGTGGGGCGGCATCTGGATCAGGGCACCTGATGGCACCTGCAGGGCCTGGTGTTGGTTACAACCAAGGACCTCCTCAAGCATTGAACCCAGCTCTTGGCCAGGCCCTGACTGCTTTGCTGGCGAGTCAGGGTGCTGGGTTAGGACTAACTAATTTGTTAGGGACGCTCGGATCTGCTGCAGGGCTGAATCCAGCTGTGCAAGGCGGCGGACCTGGAGTACAAAGTGGGTATGGTAGTCAAGCAAATATAAGTCCTGGTGTAATTGGATATGGAAGTCAAAGCGGTGTGCAGGGTGGATATCCAAACCAACAGATGGGACAGGGTGGAACCGTAAGGGGAGGGCAGCATGGAGTTGGACAGTATGGTGGTCCTGGCGGTTATATGGGGCACTAG

mRNA sequence

ATGGTTGCTGATGCGGACCCATCCCACCGCAAGATTTTTGTTCACGGGCTCGGATGGGATACCAATACGGAAACTTTGAACAACGTGTTTAAGCAATATGGGGAGATTGAGGACTCCAAAGCTGTGTGTGATAAGGTCTCTGGGAAGTCCAAGGGTTACGGTTTCATCCTCTTCAAGAAGCGTAGTGGGGCTCGAAAAGCACTGAAGGAACCCCAGAAGAAGATTGGCAATAGGATGACTGCCTGTCAGTTGGCTTCGGTTGGGCCTGTTCCATCGTCGAGTGCGGCGGTAGTAACCCCTCAAGCACCACCTGCTTCGGAATATACTCAGAGGAAGATTTATGTGAGCAATGTTGGAGCTGATGTAGACCCCCAGAAGTTGCTAACTTTCTTTTCCCAGTTCGGTGAAGTTGATGAAGGACCATTGGGGCTTGACAAGGTGACAGGCAAGCCTAAAGGTTTCTGTCTATTTGTGTACAAGACGATAGAAAGTGCTAAGAGGGCTTTGGAGGAGCCCCACAAGAACTTTGAGGGTCATATGTTGCATTGCCAGAGGGCCATCGACGGTCCCAAGCCAGGGAAGTCTCAGCACCAGCATCATGTACAAAATGCTCCGTTTCAGAGGAATAAGAATCCGAATTATGCAGGTGGGGCGGCATCTGGATCAGGGCACCTGATGGCACCTGCAGGGCCTGGTGTTGGTTACAACCAAGGACCTCCTCAAGCATTGAACCCAGCTCTTGGCCAGGCCCTGACTGCTTTGCTGGCGAGTCAGGGTGCTGGGTTAGGACTAACTAATTTGTTAGGGACGCTCGGATCTGCTGCAGGGCTGAATCCAGCTGTGCAAGGCGGCGGACCTGGAGTACAAAGTGGGTATGGTAGTCAAGCAAATATAAGTCCTGGTGTAATTGGATATGGAAGTCAAAGCGGTGTGCAGGGTGGATATCCAAACCAACAGATGGGACAGGGTGGAACCGTAAGGGGAGGGCAGCATGGAGTTGGACAGTATGGTGGTCCTGGCGGTTATATGGGGCACTAG

Coding sequence (CDS)

ATGGTTGCTGATGCGGACCCATCCCACCGCAAGATTTTTGTTCACGGGCTCGGATGGGATACCAATACGGAAACTTTGAACAACGTGTTTAAGCAATATGGGGAGATTGAGGACTCCAAAGCTGTGTGTGATAAGGTCTCTGGGAAGTCCAAGGGTTACGGTTTCATCCTCTTCAAGAAGCGTAGTGGGGCTCGAAAAGCACTGAAGGAACCCCAGAAGAAGATTGGCAATAGGATGACTGCCTGTCAGTTGGCTTCGGTTGGGCCTGTTCCATCGTCGAGTGCGGCGGTAGTAACCCCTCAAGCACCACCTGCTTCGGAATATACTCAGAGGAAGATTTATGTGAGCAATGTTGGAGCTGATGTAGACCCCCAGAAGTTGCTAACTTTCTTTTCCCAGTTCGGTGAAGTTGATGAAGGACCATTGGGGCTTGACAAGGTGACAGGCAAGCCTAAAGGTTTCTGTCTATTTGTGTACAAGACGATAGAAAGTGCTAAGAGGGCTTTGGAGGAGCCCCACAAGAACTTTGAGGGTCATATGTTGCATTGCCAGAGGGCCATCGACGGTCCCAAGCCAGGGAAGTCTCAGCACCAGCATCATGTACAAAATGCTCCGTTTCAGAGGAATAAGAATCCGAATTATGCAGGTGGGGCGGCATCTGGATCAGGGCACCTGATGGCACCTGCAGGGCCTGGTGTTGGTTACAACCAAGGACCTCCTCAAGCATTGAACCCAGCTCTTGGCCAGGCCCTGACTGCTTTGCTGGCGAGTCAGGGTGCTGGGTTAGGACTAACTAATTTGTTAGGGACGCTCGGATCTGCTGCAGGGCTGAATCCAGCTGTGCAAGGCGGCGGACCTGGAGTACAAAGTGGGTATGGTAGTCAAGCAAATATAAGTCCTGGTGTAATTGGATATGGAAGTCAAAGCGGTGTGCAGGGTGGATATCCAAACCAACAGATGGGACAGGGTGGAACCGTAAGGGGAGGGCAGCATGGAGTTGGACAGTATGGTGGTCCTGGCGGTTATATGGGGCACTAG

Protein sequence

MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKRSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHMLHCQRAIDGPKPGKSQHQHHVQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYNQGPPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGVQSGYGSQANISPGVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH
Homology
[Close]
BLAST of Cp4.1LG05g10940 vs. Swiss-Prot
Match: UBA2A_ARATH (UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.9e-117
Identity = 241/359 (67.13%), Postives = 273/359 (76.04%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           VAD DP HRKIFVHGLGWDT TETL   FKQYGEIED KAV DK+SGKSKGYGFIL+K R
Sbjct: 132 VADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSR 191

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPV----PSSSAAVVTPQAPPASEYTQRKIYVSN 121
           SGAR ALK+PQKKIG+RMTACQLAS GPV    P ++AAV  P     SE+TQ+KIYVSN
Sbjct: 192 SGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSN 251

Query: 122 VGADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFE 181
           VGA++DPQKLL FFS+FGE++EGPLGLDK TG+PKGFCLFVYK+ ESAKRALEEPHK FE
Sbjct: 252 VGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFE 311

Query: 182 GHMLHCQRAIDGPKPGKSQHQHH----VQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGV 241
           GH+LHCQ+AIDGPKPGK Q  HH      N  +QRN N  Y  G   G GHLMA    G+
Sbjct: 312 GHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRNDNNGY--GPPGGHGHLMAGNPAGM 371

Query: 242 GYNQGP-PQALNPALGQALTALLASQGAGLGLT-----NLLGTLGSAAGLNPAVQGGGPG 301
           G   GP  Q +NPA+GQALTALLASQGAGL         LLG+LG+AAG+NP   G G G
Sbjct: 372 G---GPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP---GNGVG 431

Query: 302 VQSGYGSQANISPGVI-GYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           + +GYG+QA ++PG + GYG+Q G+QGGY   Q GQGGT R GQHGVG YG P  YMGH
Sbjct: 432 MPTGYGTQA-MAPGTMPGYGTQPGLQGGYQTPQPGQGGTSR-GQHGVGPYGTP--YMGH 478

[Close]
BLAST of Cp4.1LG05g10940 vs. Swiss-Prot
Match: UBA2B_ARATH (UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 7.3e-109
Identity = 233/354 (65.82%), Postives = 261/354 (73.73%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           +VAD D  HRKIFVHGLGWDT  ++L + FKQYGEIED K V DKVSG+SKGYGFILFK 
Sbjct: 119 IVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
           RSGAR ALK+PQKKIG RMTACQLAS+GPV  +   VV P      E  QRKIYVSNV A
Sbjct: 179 RSGARNALKQPQKKIGTRMTACQLASIGPVQGNP--VVAPAQHFNPENVQRKIYVSNVSA 238

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           D+DPQKLL FFS+FGE++EGPLGLDK TG+PKGF LFVY+++ESAK+ALEEPHK FEGH+
Sbjct: 239 DIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHV 298

Query: 181 LHCQRAIDGPKPGKSQHQH----HVQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYN 240
           LHC +A DGPK  K QHQH    H QN+ +QRN N  Y  GA  G GH +A      G N
Sbjct: 299 LHCHKANDGPKQVK-QHQHNHNSHNQNSRYQRNDNNGY--GAPGGHGHFIA------GNN 358

Query: 241 QGPPQALNPALGQALTALLASQGAGLGLTN-----LLGTLGSAAGLNPAVQGGGPGVQSG 300
           Q   QA NPA+GQALTALLASQGAGLGL       LLGTLG+A   +P   GG P   SG
Sbjct: 359 QA-VQAFNPAIGQALTALLASQGAGLGLNQAFGQALLGTLGTA---SPGAVGGMP---SG 418

Query: 301 YGSQANISPGVI-GYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMG 345
           YG+QANISPGV  GYG+Q+G QGGY  QQ GQGG  R GQHG G YGGP  YMG
Sbjct: 419 YGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGAGR-GQHGAG-YGGP--YMG 450

[Close]
BLAST of Cp4.1LG05g10940 vs. Swiss-Prot
Match: UBA2C_ARATH (UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.3e-44
Identity = 134/353 (37.96%), Postives = 177/353 (50.14%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           + AD+D S RK+F+ GL  DT TE L ++F  YG++E++  + DKV+GKSKGYGF+ F  
Sbjct: 66  LTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMH 125

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
             GA  ALKEP KKI  R+T  QLA+ G   + S           ++ + RKIYV+NV  
Sbjct: 126 VDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQI---------ADISMRKIYVANVPF 185

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           D+   +LL  F  +G+V+EGPLG DKVTGK +GF LFVYKT E A+ AL +P K  +G  
Sbjct: 186 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 245

Query: 181 LHCQRAIDGPKPGK----------SQHQH-HVQNAPFQRNKNPNYAGGAASGSGHLMAPA 240
           L+C+ A+DG K GK          S H H H +     R   P  A G  S  G      
Sbjct: 246 LNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYGAAGGISAYG------ 305

Query: 241 GPGVGYNQGPPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQG-GGPGV 300
               GY+ GPP          + +  +S G G            +AG      G GGPG 
Sbjct: 306 ----GYSGGPP-------AHHMNSTHSSMGVG------------SAGYGGHYGGYGGPG- 365

Query: 301 QSGYGSQANISPGVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGG 342
             G G    +  G  G G+ SG     P+   G GG    G +G+    G  G
Sbjct: 366 --GTGVYGGLGGGYGGPGTGSGQYRMPPSSMPGGGGYPESGHYGLSSSAGYPG 377

[Close]
BLAST of Cp4.1LG05g10940 vs. Swiss-Prot
Match: UBA1A_ARATH (UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-24
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 3   ADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKRS 62
           AD D +HRKIFV+GL W+T  ETL  VF+ YGEIE+   V DK +GK+KG+GF++FK R 
Sbjct: 97  ADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRK 156

Query: 63  GARKALKEPQKKIGNRMTACQLASVGPVPS 93
           GA++ALKEP+K+I NR   CQLAS+GP  S
Sbjct: 157 GAKEALKEPKKRILNRTATCQLASMGPAAS 186

[Close]
BLAST of Cp4.1LG05g10940 vs. Swiss-Prot
Match: UBA1C_ARATH (UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 7.5e-21
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 3   ADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKRS 62
           AD D + R IFV G GWDT  E L   F+ YGEIE+   V DK +G+ KGYGF++FK R 
Sbjct: 401 ADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRK 460

Query: 63  GARKALKEPQKKIGNRMTACQLASVGP 90
           GAR+ALK P+K++ NR+  C LAS  P
Sbjct: 461 GAREALKRPEKRMYNRIVVCNLASEKP 487

[Close]
BLAST of Cp4.1LG05g10940 vs. TrEMBL
Match: A0A0A0LQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297150 PE=4 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 7.5e-177
Identity = 316/345 (91.59%), Postives = 328/345 (95.07%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           MVADADPSHRKIFVHGLGWDTN ETL NVFKQ+GEIED KAVCDKVSGKSKGYGFILFKK
Sbjct: 158 MVADADPSHRKIFVHGLGWDTNAETLINVFKQFGEIEDCKAVCDKVSGKSKGYGFILFKK 217

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
           RSGARKALKEPQKKIGNRMTACQLASVGPVP+++A V  PQ PPASEYTQRKIYVSNVGA
Sbjct: 218 RSGARKALKEPQKKIGNRMTACQLASVGPVPTTNA-VAAPQVPPASEYTQRKIYVSNVGA 277

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           DVDPQKLL FFSQFGEVDEGPLGLDK+TGKPKGFCLFVYK+IESAK+ALEEPHKNFEGH+
Sbjct: 278 DVDPQKLLAFFSQFGEVDEGPLGLDKMTGKPKGFCLFVYKSIESAKKALEEPHKNFEGHV 337

Query: 181 LHCQRAIDGPKPGKSQHQHHVQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYNQGPP 240
           LHCQ+AIDGPKPGK+QHQHH  NAPFQRNKNPNY GGAASGSGHLMAPAGPGVGYNQGPP
Sbjct: 338 LHCQKAIDGPKPGKAQHQHHTPNAPFQRNKNPNYTGGAASGSGHLMAPAGPGVGYNQGPP 397

Query: 241 QALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGVQSGYGSQANISP 300
           Q LNPA+GQALTALLA QGAGLGLTNLLGTLG+ AGLNPAVQG GPGVQSGYGSQANISP
Sbjct: 398 QGLNPAIGQALTALLAGQGAGLGLTNLLGTLGT-AGLNPAVQGAGPGVQSGYGSQANISP 457

Query: 301 GVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           GVIGYGSQSGVQGGYPNQQMGQGG  RGGQHGVGQYGGPGGYMGH
Sbjct: 458 GVIGYGSQSGVQGGYPNQQMGQGGAGRGGQHGVGQYGGPGGYMGH 500

[Close]
BLAST of Cp4.1LG05g10940 vs. TrEMBL
Match: A0A067JQZ6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03187 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 6.2e-139
Identity = 266/353 (75.35%), Postives = 301/353 (85.27%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           +AD DP HRKIFVHGLGWDTN ETL N FK YGEIED KAVCDKVSGKSKGYGFILFKKR
Sbjct: 114 IADEDPVHRKIFVHGLGWDTNAETLLNAFKPYGEIEDCKAVCDKVSGKSKGYGFILFKKR 173

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGAD 121
           SGARKALKEPQKKIGNRMTACQLAS+GPVP++SAA+++ Q    SEYTQRKIYVSNVGAD
Sbjct: 174 SGARKALKEPQKKIGNRMTACQLASIGPVPTTSAAILS-QQQLVSEYTQRKIYVSNVGAD 233

Query: 122 VDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHML 181
           +DPQKL TFFS +GE++EGPLGLDK++GKPKGFCLFVYK +ESAK+ALEEPHKNFEGH+L
Sbjct: 234 LDPQKLTTFFSNYGEIEEGPLGLDKLSGKPKGFCLFVYKNVESAKKALEEPHKNFEGHIL 293

Query: 182 HCQRAIDGPKPGKS----QHQHHVQNAPFQRNKNPNYAGGAASGSGHLMAP-AGPGVGYN 241
           HCQ+AIDGPKPGKS    + QH+VQN  FQRN+N  +AGG A+G  HLMAP AGPG+G+N
Sbjct: 294 HCQKAIDGPKPGKSMQQQRSQHNVQNPNFQRNENVAFAGGTAAGPAHLMAPAAGPGIGFN 353

Query: 242 QG--PPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPA-VQGGGPGVQSGYG 301
           QG     ALNPALGQALTALLA+QGAGLGLT++LGTLGSAA ++ A V G   G+Q  YG
Sbjct: 354 QGAAAAPALNPALGQALTALLATQGAGLGLTSILGTLGSAAAVSQAGVPGAASGMQGAYG 413

Query: 302 SQANISPGVIG-YGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           +QANISPGVIG YG+Q  +QGGY NQQ+G GG+ R GQHGVGQYGG   YMGH
Sbjct: 414 NQANISPGVIGSYGTQGVIQGGYSNQQVGHGGSAR-GQHGVGQYGGVAPYMGH 464

[Close]
BLAST of Cp4.1LG05g10940 vs. TrEMBL
Match: M5WHP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004648mg PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 2.9e-136
Identity = 260/357 (72.83%), Postives = 296/357 (82.91%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           VAD DP HRKIFVHGLGWDTN ETL +VFK+YGEIED KAVCDKVSGKSKGYGFILFK R
Sbjct: 144 VADEDPIHRKIFVHGLGWDTNAETLTSVFKEYGEIEDCKAVCDKVSGKSKGYGFILFKTR 203

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTP------QAPPASEYTQRKIYV 121
           SGARKALK+PQKKIGNRMTACQLA++GP P+ S A   P      Q+   SEYTQRKIYV
Sbjct: 204 SGARKALKQPQKKIGNRMTACQLAAIGPGPAPSTAAAVPVAVQAAQSQTVSEYTQRKIYV 263

Query: 122 SNVGADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKN 181
           SNVGAD++PQKLL FFS+FGE++EGPLGLDK+TG+PKGFCLFVYK+ ESAKRALEEPHKN
Sbjct: 264 SNVGADLEPQKLLMFFSRFGEIEEGPLGLDKMTGRPKGFCLFVYKSPESAKRALEEPHKN 323

Query: 182 FEGHMLHCQRAIDGPKPGKSQH--QHH--VQNAPFQRNKNPNYAGGAASGSGHLMAPAGP 241
           F+GH+LHCQ+AIDGPKP KSQH  QHH    N+ FQRN+NP Y GGAA+G GHLMAPA  
Sbjct: 324 FDGHILHCQKAIDGPKPVKSQHPNQHHHKSHNSKFQRNENPGYVGGAAAGMGHLMAPASG 383

Query: 242 GVGYNQG--PPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGVQ 301
           G+G+NQG    QALNPALGQALTAL A+QGAGLGLTNLLGT G+A  +NP V G G  +Q
Sbjct: 384 GIGFNQGAAAAQALNPALGQALTALFATQGAGLGLTNLLGTFGTAPNVNPGVPGAGHAIQ 443

Query: 302 SGYGSQANISPGVIG-YGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
            GY +QA+ISPG++G YG+Q  +QGGYPN Q+GQGG+ R GQHGVGQ GG   Y+GH
Sbjct: 444 GGYANQASISPGMMGSYGNQGAMQGGYPNPQIGQGGSGR-GQHGVGQSGG-APYLGH 498

[Close]
BLAST of Cp4.1LG05g10940 vs. TrEMBL
Match: B9S7Y1_RICCO (Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM_1382750 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 4.4e-129
Identity = 257/355 (72.39%), Postives = 292/355 (82.25%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           +ADADP+HRKIFVHGLGWD+  ETL N FKQYGEIED KAVCDKVSGKSKGYGFILFKKR
Sbjct: 127 IADADPAHRKIFVHGLGWDSTAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKR 186

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAP---PASEYTQRKIYVSNV 121
           SGARKAL+EPQKKIGNRMTACQLAS+GPVP+S+A   TP AP     SEYTQRKIY+SNV
Sbjct: 187 SGARKALEEPQKKIGNRMTACQLASMGPVPTSTAPANTP-APGQQQVSEYTQRKIYISNV 246

Query: 122 GADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEG 181
           GAD+DPQ+L +FFS+FGE++EGPLGLDK+TGKPKGFCLFVYK++ESAK+ALEEPHKNFEG
Sbjct: 247 GADLDPQQLTSFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESAKKALEEPHKNFEG 306

Query: 182 HMLHCQRAIDGPKPGKSQHQ---HHVQNAPFQRNKNP-NYAGGAASGSGHLMAPAG-PGV 241
           H+LHCQ+A+DGPK GKSQ Q   H+VQ + FQRN N   Y+G    G  HLMAPA  PG+
Sbjct: 307 HILHCQKAVDGPKHGKSQQQQQHHNVQKSHFQRNGNAGGYSGRNVPGPAHLMAPAAPPGI 366

Query: 242 GYN--QGPPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNP-AVQGGGPGVQS 301
           GY    G P ALNPALGQALTALLASQGAGLGL NLLG+LGSAA +N   V G   G+Q 
Sbjct: 367 GYQGAAGAP-ALNPALGQALTALLASQGAGLGL-NLLGSLGSAAAVNQGGVPGAAAGMQG 426

Query: 302 GYGSQANISPGVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
            YG+Q +ISPGVIGYG+Q  +QGGY +QQ+GQ  + RG   GVGQYGG G YMGH
Sbjct: 427 AYGNQPSISPGVIGYGNQGVMQGGYSSQQIGQTSSGRGQHGGVGQYGGVGPYMGH 478

[Close]
BLAST of Cp4.1LG05g10940 vs. TrEMBL
Match: W9S003_9ROSA (Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_008334 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 1.0e-125
Identity = 251/351 (71.51%), Postives = 290/351 (82.62%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           +A+ DP+HRKIFV+GLGWDT  ETL +VFK+YG+IED KAVCDKVSGKSKGYGFILFK R
Sbjct: 148 IAEEDPAHRKIFVYGLGWDTTAETLTSVFKEYGDIEDCKAVCDKVSGKSKGYGFILFKTR 207

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGAD 121
           SGARKALKEPQKKIGNRMT+ QLASVG VP++++A   PQ P +SEYTQRKIYVSNVGA+
Sbjct: 208 SGARKALKEPQKKIGNRMTSSQLASVGVVPAAASA--QPQGP-SSEYTQRKIYVSNVGAE 267

Query: 122 VDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHML 181
           +DPQKL  FFS++GE++EGPLGLDK TG+PKGFCLFVYKT++ A++AL EPHKNFEG++L
Sbjct: 268 LDPQKLTVFFSKYGEIEEGPLGLDKATGRPKGFCLFVYKTVDGARKALAEPHKNFEGNIL 327

Query: 182 HCQRAIDGPKPGKSQH-QHHVQNAPFQRNKNPNYAGGAASG---SGHLMAPAGPGVGYNQ 241
           HCQ+AIDGPKPGKS H QHH  N   QRNKNP + GGA  G    GHLMAPAGPG G+ Q
Sbjct: 328 HCQKAIDGPKPGKSHHNQHHHHN---QRNKNPGF-GGAQPGPAVPGHLMAPAGPG-GFTQ 387

Query: 242 G--PPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGL-NPAVQGGGPGVQSGYGS 301
           G    QALNPALGQA+TALLASQG+G+GLTNLLGTLGSAAG+  P V G G  +Q  YG+
Sbjct: 388 GAAAAQALNPALGQAITALLASQGSGMGLTNLLGTLGSAAGVAAPGVAGPGQVIQPAYGN 447

Query: 302 QANISPGVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           QA++      YG+Q G+QGGYPNQQMGQGGT R GQ GVGQYGG   YMGH
Sbjct: 448 QASM------YGNQGGMQGGYPNQQMGQGGTGR-GQGGVGQYGGAPAYMGH 483

[Close]
BLAST of Cp4.1LG05g10940 vs. TAIR10
Match: AT3G56860.3 (AT3G56860.3 UBP1-associated protein 2A)

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-118
Identity = 241/359 (67.13%), Postives = 273/359 (76.04%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           VAD DP HRKIFVHGLGWDT TETL   FKQYGEIED KAV DK+SGKSKGYGFIL+K R
Sbjct: 132 VADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSR 191

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPV----PSSSAAVVTPQAPPASEYTQRKIYVSN 121
           SGAR ALK+PQKKIG+RMTACQLAS GPV    P ++AAV  P     SE+TQ+KIYVSN
Sbjct: 192 SGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSN 251

Query: 122 VGADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFE 181
           VGA++DPQKLL FFS+FGE++EGPLGLDK TG+PKGFCLFVYK+ ESAKRALEEPHK FE
Sbjct: 252 VGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFE 311

Query: 182 GHMLHCQRAIDGPKPGKSQHQHH----VQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGV 241
           GH+LHCQ+AIDGPKPGK Q  HH      N  +QRN N  Y  G   G GHLMA    G+
Sbjct: 312 GHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQRNDNNGY--GPPGGHGHLMAGNPAGM 371

Query: 242 GYNQGP-PQALNPALGQALTALLASQGAGLGLT-----NLLGTLGSAAGLNPAVQGGGPG 301
           G   GP  Q +NPA+GQALTALLASQGAGL         LLG+LG+AAG+NP   G G G
Sbjct: 372 G---GPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP---GNGVG 431

Query: 302 VQSGYGSQANISPGVI-GYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           + +GYG+QA ++PG + GYG+Q G+QGGY   Q GQGGT R GQHGVG YG P  YMGH
Sbjct: 432 MPTGYGTQA-MAPGTMPGYGTQPGLQGGYQTPQPGQGGTSR-GQHGVGPYGTP--YMGH 478

[Close]
BLAST of Cp4.1LG05g10940 vs. TAIR10
Match: AT2G41060.1 (AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 395.2 bits (1014), Expect = 4.1e-110
Identity = 233/354 (65.82%), Postives = 261/354 (73.73%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           +VAD D  HRKIFVHGLGWDT  ++L + FKQYGEIED K V DKVSG+SKGYGFILFK 
Sbjct: 119 IVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
           RSGAR ALK+PQKKIG RMTACQLAS+GPV  +   VV P      E  QRKIYVSNV A
Sbjct: 179 RSGARNALKQPQKKIGTRMTACQLASIGPVQGNP--VVAPAQHFNPENVQRKIYVSNVSA 238

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           D+DPQKLL FFS+FGE++EGPLGLDK TG+PKGF LFVY+++ESAK+ALEEPHK FEGH+
Sbjct: 239 DIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHV 298

Query: 181 LHCQRAIDGPKPGKSQHQH----HVQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYN 240
           LHC +A DGPK  K QHQH    H QN+ +QRN N  Y  GA  G GH +A      G N
Sbjct: 299 LHCHKANDGPKQVK-QHQHNHNSHNQNSRYQRNDNNGY--GAPGGHGHFIA------GNN 358

Query: 241 QGPPQALNPALGQALTALLASQGAGLGLTN-----LLGTLGSAAGLNPAVQGGGPGVQSG 300
           Q   QA NPA+GQALTALLASQGAGLGL       LLGTLG+A   +P   GG P   SG
Sbjct: 359 QA-VQAFNPAIGQALTALLASQGAGLGLNQAFGQALLGTLGTA---SPGAVGGMP---SG 418

Query: 301 YGSQANISPGVI-GYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMG 345
           YG+QANISPGV  GYG+Q+G QGGY  QQ GQGG  R GQHG G YGGP  YMG
Sbjct: 419 YGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGAGR-GQHGAG-YGGP--YMG 450

[Close]
BLAST of Cp4.1LG05g10940 vs. TAIR10
Match: AT3G15010.1 (AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.1 bits (453), Expect = 4.7e-45
Identity = 134/353 (37.96%), Postives = 177/353 (50.14%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           + AD+D S RK+F+ GL  DT TE L ++F  YG++E++  + DKV+GKSKGYGF+ F  
Sbjct: 66  LTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMH 125

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
             GA  ALKEP KKI  R+T  QLA+ G   + S           ++ + RKIYV+NV  
Sbjct: 126 VDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQI---------ADISMRKIYVANVPF 185

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           D+   +LL  F  +G+V+EGPLG DKVTGK +GF LFVYKT E A+ AL +P K  +G  
Sbjct: 186 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 245

Query: 181 LHCQRAIDGPKPGK----------SQHQH-HVQNAPFQRNKNPNYAGGAASGSGHLMAPA 240
           L+C+ A+DG K GK          S H H H +     R   P  A G  S  G      
Sbjct: 246 LNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYGAAGGISAYG------ 305

Query: 241 GPGVGYNQGPPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQG-GGPGV 300
               GY+ GPP          + +  +S G G            +AG      G GGPG 
Sbjct: 306 ----GYSGGPP-------AHHMNSTHSSMGVG------------SAGYGGHYGGYGGPG- 365

Query: 301 QSGYGSQANISPGVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGG 342
             G G    +  G  G G+ SG     P+   G GG    G +G+    G  G
Sbjct: 366 --GTGVYGGLGGGYGGPGTGSGQYRMPPSSMPGGGGYPESGHYGLSSSAGYPG 377

[Close]
BLAST of Cp4.1LG05g10940 vs. TAIR10
Match: AT2G22090.2 (AT2G22090.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 115.5 bits (288), Expect = 6.3e-26
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 3   ADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKRS 62
           AD D +HRKIFV+GL W+T  ETL  VF+ YGEIE+   V DK +GK+KG+GF++FK R 
Sbjct: 97  ADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRK 156

Query: 63  GARKALKEPQKKIGNRMTACQLASVGPVPS 93
           GA++ALKEP+K+I NR   CQLAS+GP  S
Sbjct: 157 GAKEALKEPKKRILNRTATCQLASMGPAAS 186

[Close]
BLAST of Cp4.1LG05g10940 vs. TAIR10
Match: AT2G19380.1 (AT2G19380.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-22
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 3   ADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKRS 62
           AD D + R IFV G GWDT  E L   F+ YGEIE+   V DK +G+ KGYGF++FK R 
Sbjct: 401 ADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRK 460

Query: 63  GARKALKEPQKKIGNRMTACQLASVGP 90
           GAR+ALK P+K++ NR+  C LAS  P
Sbjct: 461 GAREALKRPEKRMYNRIVVCNLASEKP 487

[Close]
BLAST of Cp4.1LG05g10940 vs. NCBI nr
Match: gi|659116100|ref|XP_008457902.1| (PREDICTED: UBP1-associated protein 2A-like [Cucumis melo])

HSP 1 Score: 630.9 bits (1626), Expect = 1.3e-177
Identity = 318/345 (92.17%), Postives = 330/345 (95.65%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           MVADADPSHRKIFVHGLGWDTN ETL NVFKQ+GEIED KAVCDKVSGKSKGYGFILFKK
Sbjct: 156 MVADADPSHRKIFVHGLGWDTNAETLINVFKQFGEIEDCKAVCDKVSGKSKGYGFILFKK 215

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
           RSGARKALKEPQKKIGNRMTACQLASVGPVP+++A V  PQAPPASEYTQRKIYVSNVGA
Sbjct: 216 RSGARKALKEPQKKIGNRMTACQLASVGPVPTANA-VAAPQAPPASEYTQRKIYVSNVGA 275

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           DVDPQKLL FFSQFGEVDEGPLGLDK+TGKPKGFCLFVYK+IESAK+ALEEPHKNFEGH+
Sbjct: 276 DVDPQKLLAFFSQFGEVDEGPLGLDKMTGKPKGFCLFVYKSIESAKKALEEPHKNFEGHV 335

Query: 181 LHCQRAIDGPKPGKSQHQHHVQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYNQGPP 240
           LHCQ+AIDGPKPGK+QHQHH  NAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYNQGPP
Sbjct: 336 LHCQKAIDGPKPGKAQHQHHTPNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYNQGPP 395

Query: 241 QALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGVQSGYGSQANISP 300
           Q LNPA+GQALTALLA QGAGLGLTNLLGTLG+ AGLNPAVQG GPGVQSGYGSQANISP
Sbjct: 396 QGLNPAIGQALTALLAGQGAGLGLTNLLGTLGT-AGLNPAVQGAGPGVQSGYGSQANISP 455

Query: 301 GVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           GVIGYGSQSGVQGGYPNQQMGQGG  RGGQHGVGQYGGPGGYMGH
Sbjct: 456 GVIGYGSQSGVQGGYPNQQMGQGGAGRGGQHGVGQYGGPGGYMGH 498

[Close]
BLAST of Cp4.1LG05g10940 vs. NCBI nr
Match: gi|449461439|ref|XP_004148449.1| (PREDICTED: UBP1-associated protein 2A-like [Cucumis sativus])

HSP 1 Score: 627.9 bits (1618), Expect = 1.1e-176
Identity = 316/345 (91.59%), Postives = 328/345 (95.07%), Query Frame = 1 

Query: 1   MVADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKK 60
           MVADADPSHRKIFVHGLGWDTN ETL NVFKQ+GEIED KAVCDKVSGKSKGYGFILFKK
Sbjct: 158 MVADADPSHRKIFVHGLGWDTNAETLINVFKQFGEIEDCKAVCDKVSGKSKGYGFILFKK 217

Query: 61  RSGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGA 120
           RSGARKALKEPQKKIGNRMTACQLASVGPVP+++A V  PQ PPASEYTQRKIYVSNVGA
Sbjct: 218 RSGARKALKEPQKKIGNRMTACQLASVGPVPTTNA-VAAPQVPPASEYTQRKIYVSNVGA 277

Query: 121 DVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHM 180
           DVDPQKLL FFSQFGEVDEGPLGLDK+TGKPKGFCLFVYK+IESAK+ALEEPHKNFEGH+
Sbjct: 278 DVDPQKLLAFFSQFGEVDEGPLGLDKMTGKPKGFCLFVYKSIESAKKALEEPHKNFEGHV 337

Query: 181 LHCQRAIDGPKPGKSQHQHHVQNAPFQRNKNPNYAGGAASGSGHLMAPAGPGVGYNQGPP 240
           LHCQ+AIDGPKPGK+QHQHH  NAPFQRNKNPNY GGAASGSGHLMAPAGPGVGYNQGPP
Sbjct: 338 LHCQKAIDGPKPGKAQHQHHTPNAPFQRNKNPNYTGGAASGSGHLMAPAGPGVGYNQGPP 397

Query: 241 QALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGVQSGYGSQANISP 300
           Q LNPA+GQALTALLA QGAGLGLTNLLGTLG+ AGLNPAVQG GPGVQSGYGSQANISP
Sbjct: 398 QGLNPAIGQALTALLAGQGAGLGLTNLLGTLGT-AGLNPAVQGAGPGVQSGYGSQANISP 457

Query: 301 GVIGYGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           GVIGYGSQSGVQGGYPNQQMGQGG  RGGQHGVGQYGGPGGYMGH
Sbjct: 458 GVIGYGSQSGVQGGYPNQQMGQGGAGRGGQHGVGQYGGPGGYMGH 500

[Close]
BLAST of Cp4.1LG05g10940 vs. NCBI nr
Match: gi|694416470|ref|XP_009336360.1| (PREDICTED: UBP1-associated protein 2A-like [Pyrus x bretschneideri])

HSP 1 Score: 502.7 bits (1293), Expect = 5.2e-139
Identity = 266/358 (74.30%), Postives = 299/358 (83.52%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           VAD DP HRKIFVHGLGWDTN ETL  VF++YGEIED KAVCDKVSGKSKGYGFILFK R
Sbjct: 141 VADEDPIHRKIFVHGLGWDTNAETLTGVFREYGEIEDCKAVCDKVSGKSKGYGFILFKTR 200

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAP-----PASEYTQRKIYVS 121
           SGARKAL++PQKKIGNR TACQLA++GP P+ +AA     AP     P SEYTQRKIYVS
Sbjct: 201 SGARKALQQPQKKIGNRTTACQLAAIGPGPAPNAAAGPMAAPAAQSQPMSEYTQRKIYVS 260

Query: 122 NVGADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNF 181
           NVGAD+D QKLL FFS+FGEV++GPLGLDK+TG+PKGFCLFVYK+ ESAKRALEEPHKNF
Sbjct: 261 NVGADLDIQKLLMFFSRFGEVEDGPLGLDKLTGRPKGFCLFVYKSAESAKRALEEPHKNF 320

Query: 182 EGHMLHCQRAIDGPKPGKSQHQHHVQ------NAPFQRNKNPNYAGGAASGSGHLMAPAG 241
           EGH+LHCQ+AIDGPKPGKSQHQH  Q      N+ FQRN+NP YAGGAASG GHLMAPA 
Sbjct: 321 EGHILHCQKAIDGPKPGKSQHQHQNQHHHKSHNSKFQRNENPGYAGGAASGMGHLMAPAS 380

Query: 242 PGVGYNQGPP--QALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGV 301
            G+G+NQG P  QA NPA+GQALTALLA+QGAGLGLTNLLGT GSA  +NP V G G  +
Sbjct: 381 GGIGFNQGAPAAQAFNPAIGQALTALLATQGAGLGLTNLLGTFGSAPNVNPGVPGAGHVI 440

Query: 302 QSGYGSQANISPGVIG-YGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           Q GYG+QA+ISPG++G YG+QS +QGGYPN Q+GQGG+ R GQHGVGQ GG   YMGH
Sbjct: 441 QGGYGNQASISPGMMGSYGNQSAMQGGYPNPQLGQGGSGR-GQHGVGQSGG-APYMGH 496

[Close]
BLAST of Cp4.1LG05g10940 vs. NCBI nr
Match: gi|802775597|ref|XP_012090826.1| (PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas])

HSP 1 Score: 501.9 bits (1291), Expect = 8.9e-139
Identity = 266/353 (75.35%), Postives = 301/353 (85.27%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           +AD DP HRKIFVHGLGWDTN ETL N FK YGEIED KAVCDKVSGKSKGYGFILFKKR
Sbjct: 114 IADEDPVHRKIFVHGLGWDTNAETLLNAFKPYGEIEDCKAVCDKVSGKSKGYGFILFKKR 173

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAVVTPQAPPASEYTQRKIYVSNVGAD 121
           SGARKALKEPQKKIGNRMTACQLAS+GPVP++SAA+++ Q    SEYTQRKIYVSNVGAD
Sbjct: 174 SGARKALKEPQKKIGNRMTACQLASIGPVPTTSAAILS-QQQLVSEYTQRKIYVSNVGAD 233

Query: 122 VDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNFEGHML 181
           +DPQKL TFFS +GE++EGPLGLDK++GKPKGFCLFVYK +ESAK+ALEEPHKNFEGH+L
Sbjct: 234 LDPQKLTTFFSNYGEIEEGPLGLDKLSGKPKGFCLFVYKNVESAKKALEEPHKNFEGHIL 293

Query: 182 HCQRAIDGPKPGKS----QHQHHVQNAPFQRNKNPNYAGGAASGSGHLMAP-AGPGVGYN 241
           HCQ+AIDGPKPGKS    + QH+VQN  FQRN+N  +AGG A+G  HLMAP AGPG+G+N
Sbjct: 294 HCQKAIDGPKPGKSMQQQRSQHNVQNPNFQRNENVAFAGGTAAGPAHLMAPAAGPGIGFN 353

Query: 242 QG--PPQALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPA-VQGGGPGVQSGYG 301
           QG     ALNPALGQALTALLA+QGAGLGLT++LGTLGSAA ++ A V G   G+Q  YG
Sbjct: 354 QGAAAAPALNPALGQALTALLATQGAGLGLTSILGTLGSAAAVSQAGVPGAASGMQGAYG 413

Query: 302 SQANISPGVIG-YGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           +QANISPGVIG YG+Q  +QGGY NQQ+G GG+ R GQHGVGQYGG   YMGH
Sbjct: 414 NQANISPGVIGSYGTQGVIQGGYSNQQVGHGGSAR-GQHGVGQYGGVAPYMGH 464

[Close]
BLAST of Cp4.1LG05g10940 vs. NCBI nr
Match: gi|658053366|ref|XP_008362432.1| (PREDICTED: UBP1-associated protein 2A-like [Malus domestica])

HSP 1 Score: 501.5 bits (1290), Expect = 1.2e-138
Identity = 264/358 (73.74%), Postives = 299/358 (83.52%), Query Frame = 1 

Query: 2   VADADPSHRKIFVHGLGWDTNTETLNNVFKQYGEIEDSKAVCDKVSGKSKGYGFILFKKR 61
           VAD DP HRKIFVHGLGWDTN ETL  VF++YGEIED KAVCDKVSGKSKGYGFILFK R
Sbjct: 142 VADEDPIHRKIFVHGLGWDTNAETLTGVFREYGEIEDCKAVCDKVSGKSKGYGFILFKTR 201

Query: 62  SGARKALKEPQKKIGNRMTACQLASVGPVPSSSAAV-----VTPQAPPASEYTQRKIYVS 121
           SGARKAL++PQK+IGNRMTACQLA++GP P+ +AA         Q+ P SEYTQRKIYVS
Sbjct: 202 SGARKALQQPQKRIGNRMTACQLAAIGPGPAPNAAAGPVVAQAAQSQPMSEYTQRKIYVS 261

Query: 122 NVGADVDPQKLLTFFSQFGEVDEGPLGLDKVTGKPKGFCLFVYKTIESAKRALEEPHKNF 181
           NVGAD+D QKLL FFS+FGEV++GPLGLDK+TG+PKGFCLFVYK+ ESAKRALEEPHKNF
Sbjct: 262 NVGADLDIQKLLMFFSRFGEVEDGPLGLDKLTGRPKGFCLFVYKSAESAKRALEEPHKNF 321

Query: 182 EGHMLHCQRAIDGPKPGKSQHQHHVQ------NAPFQRNKNPNYAGGAASGSGHLMAPAG 241
           EGH+LHCQ+AIDGPKPGKSQHQH  Q      N+ FQRN+NP YAGGAASG GHLMAPA 
Sbjct: 322 EGHILHCQKAIDGPKPGKSQHQHQNQHHHKSHNSKFQRNENPGYAGGAASGMGHLMAPAS 381

Query: 242 PGVGYNQGPP--QALNPALGQALTALLASQGAGLGLTNLLGTLGSAAGLNPAVQGGGPGV 301
            G+G+NQG P  QA NPA+GQALTALLA+QGAGLGLTNLLGT GSA  +NP V G G  +
Sbjct: 382 GGIGFNQGAPAAQAFNPAIGQALTALLATQGAGLGLTNLLGTFGSAPNVNPGVPGAGHVI 441

Query: 302 QSGYGSQANISPGVIG-YGSQSGVQGGYPNQQMGQGGTVRGGQHGVGQYGGPGGYMGH 346
           Q GYG+QA+ISPG++G YG+Q  +QGGYPN Q+GQGG+ R GQHGVGQ GG   YMGH
Sbjct: 442 QGGYGNQASISPGMMGSYGNQGAMQGGYPNPQLGQGGSGR-GQHGVGQSGG-APYMGH 497

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g10940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UBA2A_ARATH1.9e-11767.13UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1[more]
UBA2B_ARATH7.3e-10965.82UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1[more]
UBA2C_ARATH8.3e-4437.96UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1[more]
UBA1A_ARATH1.1e-2460.00UBP1-associated proteins 1A OS=Arabidopsis thaliana GN=UBA1A PE=1 SV=2[more]
UBA1C_ARATH7.5e-2154.02UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2[more]
BLAST of Cp4.1LG05g10940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ41_CUCSA7.5e-17791.59Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297150 PE=4 SV=1[more]
A0A067JQZ6_JATCU6.2e-13975.35Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03187 PE=4 SV=1[more]
M5WHP2_PRUPE2.9e-13672.83Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004648mg PE=4 SV=1[more]
B9S7Y1_RICCO4.4e-12972.39Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM... [more]
W9S003_9ROSA1.0e-12571.51Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_008334 PE=4 SV=1[more]
BLAST of Cp4.1LG05g10940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56860.31.1e-11867.13 UBP1-associated protein 2A[more]
AT2G41060.14.1e-11065.82 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G15010.14.7e-4537.96 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G22090.26.3e-2660.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G19380.14.2e-2254.02 RNA recognition motif (RRM)-containing protein[more]
BLAST of Cp4.1LG05g10940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116100|ref|XP_008457902.1|1.3e-17792.17PREDICTED: UBP1-associated protein 2A-like [Cucumis melo][more]
gi|449461439|ref|XP_004148449.1|1.1e-17691.59PREDICTED: UBP1-associated protein 2A-like [Cucumis sativus][more]
gi|694416470|ref|XP_009336360.1|5.2e-13974.30PREDICTED: UBP1-associated protein 2A-like [Pyrus x bretschneideri][more]
gi|802775597|ref|XP_012090826.1|8.9e-13975.35PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas][more]
gi|658053366|ref|XP_008362432.1|1.2e-13873.74PREDICTED: UBP1-associated protein 2A-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0008150 biological_process
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005575 cellular_component
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005622 intracellular
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g10940.1Cp4.1LG05g10940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 113..181
score: 1.0E-10coord: 12..78
score: 1.9
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..83
score: 1.1E-18coord: 112..184
score: 2.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 10..87
score: 14.317coord: 111..187
score: 12
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 4..85
score: 1.1E-20coord: 87..194
score: 1.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 6..91
score: 6.85E-21coord: 97..199
score: 7.52
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 285..341
score: 1.0E-62coord: 110..192
score: 1.0E-62coord: 8..85
score: 1.0
NoneNo IPR availablePANTHERPTHR24012:SF490UBP1-ASSOCIATED PROTEIN 2Ccoord: 110..192
score: 1.0E-62coord: 8..85
score: 1.0E-62coord: 285..341
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g10940Cucsa.250370Cucumber (Gy14) v1cgycpeB0667
Cp4.1LG05g10940CmaCh20G011100Cucurbita maxima (Rimu)cmacpeB589
Cp4.1LG05g10940CmaCh02G005980Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g10940CmoCh02G006010Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g10940CmoCh20G011390Cucurbita moschata (Rifu)cmocpeB532
Cp4.1LG05g10940Cla007755Watermelon (97103) v1cpewmB727
Cp4.1LG05g10940Csa2G297150Cucumber (Chinese Long) v2cpecuB707
Cp4.1LG05g10940MELO3C020961Melon (DHL92) v3.5.1cpemeB660
Cp4.1LG05g10940CSPI02G15150Wild cucumber (PI 183967)cpecpiB709
Cp4.1LG05g10940Lsi10G006700Bottle gourd (USVL1VR-Ls)cpelsiB593
Cp4.1LG05g10940MELO3C020961.2Melon (DHL92) v3.6.1cpemedB802
Cp4.1LG05g10940CsaV3_2G017690Cucumber (Chinese Long) v3cpecucB0882
Cp4.1LG05g10940Bhi10G001878Wax gourdcpewgoB0948
Cp4.1LG05g10940CsGy2G015140Cucumber (Gy14) v2cgybcpeB243
Cp4.1LG05g10940Carg11668Silver-seed gourdcarcpeB1476
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g10940Cp4.1LG16g00100Cucurbita pepo (Zucchini)cpecpeB313
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g10940Cucurbita pepo (Zucchini)cpecpeB098
Cp4.1LG05g10940Cucumber (Gy14) v1cgycpeB0224
Cp4.1LG05g10940Cucumber (Gy14) v1cgycpeB0666
Cp4.1LG05g10940Cucurbita maxima (Rimu)cmacpeB581
Cp4.1LG05g10940Cucurbita maxima (Rimu)cmacpeB683
Cp4.1LG05g10940Cucurbita moschata (Rifu)cmocpeB530
Cp4.1LG05g10940Cucurbita moschata (Rifu)cmocpeB538
Cp4.1LG05g10940Cucurbita moschata (Rifu)cmocpeB636
Cp4.1LG05g10940Wild cucumber (PI 183967)cpecpiB767
Cp4.1LG05g10940Cucumber (Chinese Long) v2cpecuB764
Cp4.1LG05g10940Bottle gourd (USVL1VR-Ls)cpelsiB601
Cp4.1LG05g10940Watermelon (Charleston Gray)cpewcgB643
Cp4.1LG05g10940Watermelon (Charleston Gray)cpewcgB647
Cp4.1LG05g10940Watermelon (Charleston Gray)cpewcgB664
Cp4.1LG05g10940Watermelon (97103) v1cpewmB715
Cp4.1LG05g10940Melon (DHL92) v3.5.1cpemeB657
Cp4.1LG05g10940Melon (DHL92) v3.5.1cpemeB676
Cp4.1LG05g10940Cucumber (Gy14) v2cgybcpeB866
Cp4.1LG05g10940Melon (DHL92) v3.6.1cpemedB787
Cp4.1LG05g10940Melon (DHL92) v3.6.1cpemedB791
Cp4.1LG05g10940Cucumber (Chinese Long) v3cpecucB0944