Cp4.1LG05g08510 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g08510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG05 : 5487089 .. 5488951 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTTGTCGGAGTGAGGCTTAGTGATGTTGCTTTGATTAGCATGATTGGTGTGTTTGGGGAGCTCTCGGATATGAAGTCGGGGAGGGCGATTCATGGTTACGTTGTGAGAAATGTTGGTAATGAGAGAATGGAAGTTCCTTTGACGACTGCGTTGATTGATATGTATTGCAAGGGCGACAATTTGGCATCGGCAATGAGGCTTTTCGATGGGTTATCTCAGAGAAACGTCGTTTCTTGGACGGCGTTGATAGCGGGTTGTATTCGCAGTTGCAGGTTCGATGAAGGGGCAAAGAATTTTAGTAGAATGCTTGAAGAAAACATAGTTCCTAATGAGATCACTTTACTAAGTTTGATAACAGAGTGTGGTTTTGTGGGAGCCTTGGATTTGGGCAAGTGGTTGCATGCCTATCTGTTAAGGAATGGGTTTGGGATGTCTCTGGCTTTGGCAACTGCTCTCATAGACATGTATGGAAAGTGTGGGCAAGTTGCATATGCTAGAGCTCTTTTCAATGGCGTCGAGGAAAAAGATGTCAAGATTTGGAGTGCTTTGATATCGGCTTACGCTCACGCGAGTTGCATCGATCAAGCTTTCGGTCTCTTCCTTAAGATGTTAGACAGTGAGGTGAAACCAAATAAGGTGACAATGGTTAGCCTGCTTTCTTTATGTGCAGAGGTTGGAGCCCTTGACCTTGGTAGATGGACTCATGCTTACATAAACCGTCATGGCCTCGAAGTAGACGTCGTTTTAGAAACAGCACTCATCAACATGTATGCAAAATGTGGAGATCTAAAAACTGCTCGTAGCCTGTTCGATGAAGCCACACGACGGGATATTCACATGTGGAATGCAATGATGGCTGGATTCTCGATCCATGGTTGTGGAAAAGAAGCTTTAGAACTCTTTTTAGATATGGAGTGTCATGGTGTTGAACCTAATGATATCACATTCATTTCTCTTTTTCATGCTTGTAGTCATTCTGGATTGGTAGGGGAGGGAATGAAGCATTTCGACAGAATGGTTCATGAATTTGGAATAGTTCCAAAGATCGAGCACTATGGATGTTTGGTGGATCTTCTTGGTCGAGCTAAACGTCTTGACGCAGCTCACAGCATCATCGAAAACATGCCCATGAGGCCCAACACAATTGTATGGGGTGCGCTGCTAGCTGCATGTAAGCTACATAAGAATCTAACCTTGGGGGAGGTGGCTGCAAGAAAGATTCTTGAATTGGACCCAGAAAACTGTGGGTATAGAGTTCTTAAGTCAAACATCTATGCATCCGAAAAGAGATGGACCGATGTAACGAGCGTTAGAGAAACAATGAGCCATTTAGGGATGAAGAAAGAACCAGGACTCAGCTGGATTGAGGTAAATGGCTCAGTTCATCACTTCAGATCTGGAGATAAGACATGCACACAAACAAGAAAAGTACATGAAATGGTGACCGAAATGTGCATCAAATTGAGAGAGGCGGGATACGCACCGAACACATCTGCAGTTTTGTTAAACGTAGAAGACGAAGAGAAGGAATCTGCACTCAGTTACCATAGTGAGAAACTGGCCATGGCATTTGGACTCATAAGTACAGCCCCGGGTACGCCCATCCGAATCATCAAGAATCTGAGGATTTGCGATGACTGTCATGCTGCAACAAAACTATTATCGAAAATCTATGGACGAACAATAATAGTCAGAGATCGAAACCGATTTCATCACTTTCGTGAAGGATATTGTTCTTGTCTAGGCTACTGGTAAGATAAGATTCCAAATTGCGGTCATGTACGTATTAATTTCAACAATACAATTAAGGTACATATTTTTTTTTGTTATGAGCAAACATCAAAGGAAAAACCTTGA

mRNA sequence

ATGCATTTTGTCGGAGTGAGGCTTAGTGATGTTGCTTTGATTAGCATGATTGGTGTGTTTGGGGAGCTCTCGGATATGAAGTCGGGGAGGGCGATTCATGGTTACGTTGTGAGAAATGTTGGTAATGAGAGAATGGAAGTTCCTTTGACGACTGCGTTGATTGATATGTATTGCAAGGGCGACAATTTGGCATCGGCAATGAGGCTTTTCGATGGGTTATCTCAGAGAAACGTCGTTTCTTGGACGGCGTTGATAGCGGGTTGTATTCGCAGTTGCAGGTTCGATGAAGGGGCAAAGAATTTTAGTAGAATGCTTGAAGAAAACATAGTTCCTAATGAGATCACTTTACTAAGTTTGATAACAGAGTGTGGTTTTGTGGGAGCCTTGGATTTGGGCAAGTGGTTGCATGCCTATCTGTTAAGGAATGGGTTTGGGATGTCTCTGGCTTTGGCAACTGCTCTCATAGACATGTATGGAAAGTGTGGGCAAGTTGCATATGCTAGAGCTCTTTTCAATGGCGTCGAGGAAAAAGATGTCAAGATTTGGAGTGCTTTGATATCGGCTTACGCTCACGCGAGTTGCATCGATCAAGCTTTCGGTCTCTTCCTTAAGATGTTAGACAGTGAGGTGAAACCAAATAAGGAAAAACCTTGA

Coding sequence (CDS)

ATGCATTTTGTCGGAGTGAGGCTTAGTGATGTTGCTTTGATTAGCATGATTGGTGTGTTTGGGGAGCTCTCGGATATGAAGTCGGGGAGGGCGATTCATGGTTACGTTGTGAGAAATGTTGGTAATGAGAGAATGGAAGTTCCTTTGACGACTGCGTTGATTGATATGTATTGCAAGGGCGACAATTTGGCATCGGCAATGAGGCTTTTCGATGGGTTATCTCAGAGAAACGTCGTTTCTTGGACGGCGTTGATAGCGGGTTGTATTCGCAGTTGCAGGTTCGATGAAGGGGCAAAGAATTTTAGTAGAATGCTTGAAGAAAACATAGTTCCTAATGAGATCACTTTACTAAGTTTGATAACAGAGTGTGGTTTTGTGGGAGCCTTGGATTTGGGCAAGTGGTTGCATGCCTATCTGTTAAGGAATGGGTTTGGGATGTCTCTGGCTTTGGCAACTGCTCTCATAGACATGTATGGAAAGTGTGGGCAAGTTGCATATGCTAGAGCTCTTTTCAATGGCGTCGAGGAAAAAGATGTCAAGATTTGGAGTGCTTTGATATCGGCTTACGCTCACGCGAGTTGCATCGATCAAGCTTTCGGTCTCTTCCTTAAGATGTTAGACAGTGAGGTGAAACCAAATAAGGAAAAACCTTGA

Protein sequence

MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKGDNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLITECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSALISAYAHASCIDQAFGLFLKMLDSEVKPNKEKP
Homology
[Close]
BLAST of Cp4.1LG05g08510 vs. Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 80/214 (37.38%), Postives = 130/214 (60.75%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M   GV  +++ ++S++   G++ D++ GR++HG  +   G  + +V + ++L+DMY K 
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET-GRVKCDVFIGSSLVDMYGKC 254

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
                A ++FD +  RNVV+WTALIAG ++S  FD+G   F  ML+ ++ PNE TL S++
Sbjct: 255 SCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVL 314

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
           + C  VGAL  G+ +H Y+++N   ++    T LID+Y KCG +  A  +F  + EK+V 
Sbjct: 315 SACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 374

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
            W+A+I+ +A       AF LF  ML S V PN+
Sbjct: 375 TWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNE 407

[Close]
BLAST of Cp4.1LG05g08510 vs. Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-37
Identity = 78/209 (37.32%), Postives = 123/209 (58.85%), Query Frame = 1 

Query: 5   GVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKGDNLA 64
           G R  D+     +    EL D+ +G+ IH  +V+    + +   + T L+DMY K   + 
Sbjct: 137 GFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV---VLTGLLDMYAKCGEIK 196

Query: 65  SAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLITECG 124
           SA ++F+ ++ RNVV WT++IAG +++   +EG   F+RM E N++ NE T  +LI  C 
Sbjct: 197 SAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACT 256

Query: 125 FVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSA 184
            + AL  GKW H  L+++G  +S  L T+L+DMY KCG ++ AR +FN     D+ +W+A
Sbjct: 257 KLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTA 316

Query: 185 LISAYAHASCIDQAFGLFLKMLDSEVKPN 214
           +I  Y H   +++A  LF KM   E+KPN
Sbjct: 317 MIVGYTHNGSVNEALSLFQKMKGVEIKPN 342

[Close]
BLAST of Cp4.1LG05g08510 vs. Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 72/202 (35.64%), Postives = 119/202 (58.91%), Query Frame = 1 

Query: 13  LISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKGDNLASAMRLFDG 72
           L S++ +F E  D+  G+ IHGYV+R   +   +V + ++L+DMY K   +  + R+F  
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS--DVYIGSSLVDMYAKSARIEDSERVFSR 304

Query: 73  LSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLITECGFVGALDLG 132
           L  R+ +SW +L+AG +++ R++E  + F +M+   + P  +   S+I  C  +  L LG
Sbjct: 305 LYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG 364

Query: 133 KWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSALISAYAHA 192
           K LH Y+LR GFG ++ +A+AL+DMY KCG +  AR +F+ +   D   W+A+I  +A  
Sbjct: 365 KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALH 424

Query: 193 SCIDQAFGLFLKMLDSEVKPNK 215
               +A  LF +M    VKPN+
Sbjct: 425 GHGHEAVSLFEEMKRQGVKPNQ 444

[Close]
BLAST of Cp4.1LG05g08510 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 75/213 (35.21%), Postives = 119/213 (55.87%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M   G+ L  + LI ++   G +   K G+ +HG  +R    ++ +  L  ++IDMY K 
Sbjct: 201 MRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDY-LQASIIDMYVKC 260

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
             L +A +LF+    RNVV WT LI+G  +  R  E    F +ML E+I+PN+ TL +++
Sbjct: 261 RLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAIL 320

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
             C  +G+L  GK +H Y++RNG  M     T+ IDMY +CG +  AR +F+ + E++V 
Sbjct: 321 VSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVI 380

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPN 214
            WS++I+A+      ++A   F KM    V PN
Sbjct: 381 SWSSMINAFGINGLFEEALDCFHKMKSQNVVPN 412

[Close]
BLAST of Cp4.1LG05g08510 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 69/213 (32.39%), Postives = 125/213 (58.69%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M   G++ S+  ++ ++    ++  ++ G+ +H ++++ +G ER  +  TTAL+DMY K 
Sbjct: 313 MFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK-LGFER-HLFATTALVDMYAKA 372

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
             LA A + FD L +R+V  WT+LI+G +++   +E    + RM    I+PN+ T+ S++
Sbjct: 373 GCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVL 432

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
             C  +  L+LGK +H + +++GFG+ + + +AL  MY KCG +     +F     KDV 
Sbjct: 433 KACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVV 492

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPN 214
            W+A+IS  +H    D+A  LF +ML   ++P+
Sbjct: 493 SWNAMISGLSHNGQGDEALELFEEMLAEGMEPD 523

[Close]
BLAST of Cp4.1LG05g08510 vs. TrEMBL
Match: A0A0A0LYC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690260 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 7.0e-96
Identity = 171/213 (80.28%), Postives = 191/213 (89.67%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M FVGV+LS VALIS+I VFG L DMKSGRA+HGY+VRNVG+E+MEV +TTALIDMYCKG
Sbjct: 180 MQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKG 239

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
             LASA RLFD LS+R+VVSWT +IAGCIRSCR DEGAKNF+RMLEE + PNEITLLSLI
Sbjct: 240 GCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLI 299

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
           TECGFVG LDLGKW HAYLLRNGFGMSLAL TALIDMYGKCGQV YARALFNGV++KDVK
Sbjct: 300 TECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVK 359

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPN 214
           IWS LISAYAH SC+DQ F LF++ML+++VKPN
Sbjct: 360 IWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPN 392

[Close]
BLAST of Cp4.1LG05g08510 vs. TrEMBL
Match: F6HVH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00690 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.7e-71
Identity = 132/214 (61.68%), Postives = 168/214 (78.50%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M+F+ VR S+VA++SM+ +F + ++M+ G+A+H YV+RN  NE M VP TTAL+DMY K 
Sbjct: 251 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 310

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            +L  A +LF+GL+Q+ VVSWTA+IAGCIRS R +EG K F RM EENI PNEIT+LSLI
Sbjct: 311 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 370

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            ECGF GAL LGK LHAY+LRNGF +SLALATAL+DMYGKC  +  ARALF+  + +DV 
Sbjct: 371 VECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVM 430

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IW+A++SAYA A+CIDQAF LF +M  S V+P K
Sbjct: 431 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 464

[Close]
BLAST of Cp4.1LG05g08510 vs. TrEMBL
Match: A5B4W3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034275 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.7e-71
Identity = 132/214 (61.68%), Postives = 168/214 (78.50%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M+F+ VR S+VA++SM+ +F + ++M+ G+A+H YV+RN  NE M VP TTAL+DMY K 
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            +L  A +LF+GL+Q+ VVSWTA+IAGCIRS R +EG K F RM EENI PNEIT+LSLI
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            ECGF GAL LGK LHAY+LRNGF +SLALATAL+DMYGKC  +  ARALF+  + +DV 
Sbjct: 306 VECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVM 365

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IW+A++SAYA A+CIDQAF LF +M  S V+P K
Sbjct: 366 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 399

[Close]
BLAST of Cp4.1LG05g08510 vs. TrEMBL
Match: A0A061F229_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_026249 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.6e-70
Identity = 134/214 (62.62%), Postives = 169/214 (78.97%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           MH + VR S+VA+ISM+ +F EL D++ GRA+H YV RN+  E+M V LTTA IDMY K 
Sbjct: 200 MHILQVRPSEVAMISMVNLFAELKDIEMGRAMHAYVTRNL--EKMGVHLTTAFIDMYAKS 259

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            NLASA  LF GL+Q+++VSWTA+IAG I   + +EG K F+RM+EE I PNEITLLSL+
Sbjct: 260 GNLASAGLLFHGLNQKSIVSWTAMIAGYIHCNKLEEGGKLFARMIEERIKPNEITLLSLV 319

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            ECGFVGAL+LGK +HAY+ RNG  +SLALATAL+DMYGKCGQ+  A+A+F+ V+ KDV 
Sbjct: 320 VECGFVGALELGKQIHAYISRNGICVSLALATALVDMYGKCGQIRNAKAVFDTVKNKDVM 379

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IWSA+I+AYA A CIDQA  LF+KM DS V+PN+
Sbjct: 380 IWSAMIAAYAQAHCIDQALDLFVKMRDSGVRPNQ 411

[Close]
BLAST of Cp4.1LG05g08510 vs. TrEMBL
Match: W9RT88_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024533 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.5e-69
Identity = 128/214 (59.81%), Postives = 169/214 (78.97%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           MH V VR S +A+ISM+ +F +L+++K  + +HGYV+RN+ NE+M VP+TT+L+DMY K 
Sbjct: 220 MHSVRVRPSQIAMISMVNLFADLTNVKLAKTMHGYVIRNMNNEKMGVPITTSLLDMYAKC 279

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            NLA A  LFDGL+Q++VVSWTA++AG IR  R ++G K F  MLEE + PNEIT+LSLI
Sbjct: 280 GNLAYARWLFDGLTQKSVVSWTAIVAGYIRGNRLEKGMKLFKEMLEEGVFPNEITVLSLI 339

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            ECGFVGAL+LGKWLH+Y+LRNGF MSL LATAL+DMYGKCG +  ARA+ +G ++KDV 
Sbjct: 340 IECGFVGALELGKWLHSYMLRNGFVMSLVLATALVDMYGKCGDLRSARAVSDGRDDKDVM 399

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IWSALISA A A+C ++A  LF +M D  ++PN+
Sbjct: 400 IWSALISASAQANCPNEARELFSQMRDEGLRPNE 433

[Close]
BLAST of Cp4.1LG05g08510 vs. TAIR10
Match: AT1G50270.1 (AT1G50270.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 80/214 (37.38%), Postives = 130/214 (60.75%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M   GV  +++ ++S++   G++ D++ GR++HG  +   G  + +V + ++L+DMY K 
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLET-GRVKCDVFIGSSLVDMYGKC 254

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
                A ++FD +  RNVV+WTALIAG ++S  FD+G   F  ML+ ++ PNE TL S++
Sbjct: 255 SCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVL 314

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
           + C  VGAL  G+ +H Y+++N   ++    T LID+Y KCG +  A  +F  + EK+V 
Sbjct: 315 SACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 374

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
            W+A+I+ +A       AF LF  ML S V PN+
Sbjct: 375 TWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNE 407

[Close]
BLAST of Cp4.1LG05g08510 vs. TAIR10
Match: AT2G03380.1 (AT2G03380.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-38
Identity = 78/209 (37.32%), Postives = 123/209 (58.85%), Query Frame = 1 

Query: 5   GVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKGDNLA 64
           G R  D+     +    EL D+ +G+ IH  +V+    + +   + T L+DMY K   + 
Sbjct: 137 GFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV---VLTGLLDMYAKCGEIK 196

Query: 65  SAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLITECG 124
           SA ++F+ ++ RNVV WT++IAG +++   +EG   F+RM E N++ NE T  +LI  C 
Sbjct: 197 SAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACT 256

Query: 125 FVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSA 184
            + AL  GKW H  L+++G  +S  L T+L+DMY KCG ++ AR +FN     D+ +W+A
Sbjct: 257 KLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTA 316

Query: 185 LISAYAHASCIDQAFGLFLKMLDSEVKPN 214
           +I  Y H   +++A  LF KM   E+KPN
Sbjct: 317 MIVGYTHNGSVNEALSLFQKMKGVEIKPN 342

[Close]
BLAST of Cp4.1LG05g08510 vs. TAIR10
Match: AT3G23330.1 (AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 8.0e-35
Identity = 72/202 (35.64%), Postives = 119/202 (58.91%), Query Frame = 1 

Query: 13  LISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKGDNLASAMRLFDG 72
           L S++ +F E  D+  G+ IHGYV+R   +   +V + ++L+DMY K   +  + R+F  
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS--DVYIGSSLVDMYAKSARIEDSERVFSR 304

Query: 73  LSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLITECGFVGALDLG 132
           L  R+ +SW +L+AG +++ R++E  + F +M+   + P  +   S+I  C  +  L LG
Sbjct: 305 LYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG 364

Query: 133 KWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSALISAYAHA 192
           K LH Y+LR GFG ++ +A+AL+DMY KCG +  AR +F+ +   D   W+A+I  +A  
Sbjct: 365 KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALH 424

Query: 193 SCIDQAFGLFLKMLDSEVKPNK 215
               +A  LF +M    VKPN+
Sbjct: 425 GHGHEAVSLFEEMKRQGVKPNQ 444

[Close]
BLAST of Cp4.1LG05g08510 vs. TAIR10
Match: AT1G06140.1 (AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 6.8e-34
Identity = 75/213 (35.21%), Postives = 119/213 (55.87%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M   G+ L  + LI ++   G +   K G+ +HG  +R    ++ +  L  ++IDMY K 
Sbjct: 201 MRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDY-LQASIIDMYVKC 260

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
             L +A +LF+    RNVV WT LI+G  +  R  E    F +ML E+I+PN+ TL +++
Sbjct: 261 RLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAIL 320

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
             C  +G+L  GK +H Y++RNG  M     T+ IDMY +CG +  AR +F+ + E++V 
Sbjct: 321 VSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVI 380

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPN 214
            WS++I+A+      ++A   F KM    V PN
Sbjct: 381 SWSSMINAFGINGLFEEALDCFHKMKSQNVVPN 412

[Close]
BLAST of Cp4.1LG05g08510 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 69/213 (32.39%), Postives = 125/213 (58.69%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M   G++ S+  ++ ++    ++  ++ G+ +H ++++ +G ER  +  TTAL+DMY K 
Sbjct: 313 MFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK-LGFER-HLFATTALVDMYAKA 372

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
             LA A + FD L +R+V  WT+LI+G +++   +E    + RM    I+PN+ T+ S++
Sbjct: 373 GCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVL 432

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
             C  +  L+LGK +H + +++GFG+ + + +AL  MY KCG +     +F     KDV 
Sbjct: 433 KACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVV 492

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPN 214
            W+A+IS  +H    D+A  LF +ML   ++P+
Sbjct: 493 SWNAMISGLSHNGQGDEALELFEEMLAEGMEPD 523

[Close]
BLAST of Cp4.1LG05g08510 vs. NCBI nr
Match: gi|778664358|ref|XP_011660280.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 1.0e-95
Identity = 171/213 (80.28%), Postives = 191/213 (89.67%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M FVGV+LS VALIS+I VFG L DMKSGRA+HGY+VRNVG+E+MEV +TTALIDMYCKG
Sbjct: 180 MQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKG 239

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
             LASA RLFD LS+R+VVSWT +IAGCIRSCR DEGAKNF+RMLEE + PNEITLLSLI
Sbjct: 240 GCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLI 299

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
           TECGFVG LDLGKW HAYLLRNGFGMSLAL TALIDMYGKCGQV YARALFNGV++KDVK
Sbjct: 300 TECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVK 359

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPN 214
           IWS LISAYAH SC+DQ F LF++ML+++VKPN
Sbjct: 360 IWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPN 392

[Close]
BLAST of Cp4.1LG05g08510 vs. NCBI nr
Match: gi|659125489|ref|XP_008462708.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucumis melo])

HSP 1 Score: 358.2 bits (918), Expect = 1.0e-95
Identity = 174/214 (81.31%), Postives = 191/214 (89.25%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M FVGV+LS VALIS+IGVFG L DMKSGRA+HGY++RNVG+E+MEV LTTALIDMYCK 
Sbjct: 181 MQFVGVKLSGVALISLIGVFGNLLDMKSGRAVHGYIMRNVGDEKMEVSLTTALIDMYCKC 240

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
           + LASA RLFD LS+R+VVSWT +I GCIRSCR  EGAKNF+RMLEE + PNEITLLSLI
Sbjct: 241 ECLASAQRLFDRLSKRSVVSWTVMIKGCIRSCRLVEGAKNFNRMLEEKLFPNEITLLSLI 300

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
           TECGFV  LDLGKW HAYLLRNGFGMSLAL TALIDMYGKCGQV YARALFNGVE+KDVK
Sbjct: 301 TECGFVKTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVEKKDVK 360

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IWSALISAYAH SC+DQ F LFL+MLD+EVKPNK
Sbjct: 361 IWSALISAYAHVSCMDQVFNLFLEMLDNEVKPNK 394

[Close]
BLAST of Cp4.1LG05g08510 vs. NCBI nr
Match: gi|764596074|ref|XP_004304765.2| (PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 280.4 bits (716), Expect = 2.6e-72
Identity = 136/214 (63.55%), Postives = 172/214 (80.37%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           MHF+ V+ S+VA+ISMIG+F +++D+K  +A+H YVVRN  NE++ VP+TTAL+DMY K 
Sbjct: 217 MHFLQVKPSEVAMISMIGLFADIADVKMAKAMHCYVVRNSANEKLVVPVTTALVDMYVKC 276

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            NL  A RLFDGL++++VVSWT +IAGCIR    +EG K F RMLEE   PNEIT+LSLI
Sbjct: 277 GNLGYARRLFDGLAEKSVVSWTTMIAGCIRCNEVEEGVKLFKRMLEERKFPNEITVLSLI 336

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            E G VGAL+LGKWLHAY+LRNGF MSLALATAL+DMYGKCG+  YARA+F+ +EEKDV 
Sbjct: 337 IESGNVGALELGKWLHAYVLRNGFVMSLALATALVDMYGKCGEAEYARAVFDSIEEKDVM 396

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IWSA+ISAY+ A+  +QA  LF +M DS V+PN+
Sbjct: 397 IWSAMISAYSRANQTNQASELFARMKDSGVRPNQ 430

[Close]
BLAST of Cp4.1LG05g08510 vs. NCBI nr
Match: gi|147857367|emb|CAN80796.1| (hypothetical protein VITISV_034275 [Vitis vinifera])

HSP 1 Score: 276.6 bits (706), Expect = 3.8e-71
Identity = 132/214 (61.68%), Postives = 168/214 (78.50%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           M+F+ VR S+VA++SM+ +F + ++M+ G+A+H YV+RN  NE M VP TTAL+DMY K 
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            +L  A +LF+GL+Q+ VVSWTA+IAGCIRS R +EG K F RM EENI PNEIT+LSLI
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            ECGF GAL LGK LHAY+LRNGF +SLALATAL+DMYGKC  +  ARALF+  + +DV 
Sbjct: 306 VECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVM 365

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IW+A++SAYA A+CIDQAF LF +M  S V+P K
Sbjct: 366 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 399

[Close]
BLAST of Cp4.1LG05g08510 vs. NCBI nr
Match: gi|1009117535|ref|XP_015875369.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus jujuba])

HSP 1 Score: 276.6 bits (706), Expect = 3.8e-71
Identity = 128/214 (59.81%), Postives = 172/214 (80.37%), Query Frame = 1 

Query: 1   MHFVGVRLSDVALISMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKG 60
           MH + V+ S+VA++SM+ +F +L+D ++G+A+HGYV+RN   +R+ +P+TTALIDM+ K 
Sbjct: 221 MHIMHVKPSEVAMLSMVSLFSDLADTRTGKAMHGYVIRNSNYDRLRIPITTALIDMHAKC 280

Query: 61  DNLASAMRLFDGLSQRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLI 120
            NL+SA RLF+GL Q+NVVSWTA+IAGCIR  + +EG K F++MLE  I PNEIT+ SLI
Sbjct: 281 GNLSSAKRLFNGLPQKNVVSWTAMIAGCIRCNKLEEGTKLFNKMLEGRIFPNEITVFSLI 340

Query: 121 TECGFVGALDLGKWLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVK 180
            ECGFV AL+LGKWLH+Y LRNGF M+L+LATAL+DMYGKCG    AR++F+G + KDV 
Sbjct: 341 IECGFVRALELGKWLHSYTLRNGFVMTLSLATALVDMYGKCGDTRSARSIFDGWDNKDVM 400

Query: 181 IWSALISAYAHASCIDQAFGLFLKMLDSEVKPNK 215
           IWSA+ISAYA A+C ++A  LF +M+D  VKPN+
Sbjct: 401 IWSAMISAYAQANCTNEASDLFAQMVDRGVKPNQ 434

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g08510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR75_ARATH1.9e-3837.38Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN... [more]
PP146_ARATH2.8e-3737.32Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidop... [more]
PP251_ARATH1.4e-3335.64Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
PPR14_ARATH1.2e-3235.21Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
PP181_ARATH2.0e-3232.39Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG05g08510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC2_CUCSA7.0e-9680.28Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690260 PE=4 SV=1[more]
F6HVH9_VITVI2.7e-7161.68Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00690 PE=4 SV=... [more]
A5B4W3_VITVI2.7e-7161.68Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034275 PE=4 SV=1[more]
A0A061F229_THECC8.6e-7062.62Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao G... [more]
W9RT88_9ROSA9.5e-6959.81Uncharacterized protein OS=Morus notabilis GN=L484_024533 PE=4 SV=1[more]
BLAST of Cp4.1LG05g08510 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50270.11.1e-3937.38 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G03380.11.6e-3837.32 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G23330.18.0e-3535.64 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G06140.16.8e-3435.21 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G33680.11.2e-3332.39 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG05g08510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664358|ref|XP_011660280.1|1.0e-9580.28PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-... [more]
gi|659125489|ref|XP_008462708.1|1.0e-9581.31PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-... [more]
gi|764596074|ref|XP_004304765.2|2.6e-7263.55PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-... [more]
gi|147857367|emb|CAN80796.1|3.8e-7161.68hypothetical protein VITISV_034275 [Vitis vinifera][more]
gi|1009117535|ref|XP_015875369.1|3.8e-7159.81PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Ziziphus ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g08510.1Cp4.1LG05g08510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 181..208
score: 7.9E-5coord: 152..178
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 77..123
score: 6.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 79..113
score: 2.8E-6coord: 181..213
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 112..146
score: 5.788coord: 178..212
score: 10.512coord: 46..76
score: 6.577coord: 77..111
score: 10.863coord: 147..177
score: 6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..213
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g08510CmaCh10G010120Cucurbita maxima (Rimu)cmacpeB099
Cp4.1LG05g08510CmoCh10G010680Cucurbita moschata (Rifu)cmocpeB075
Cp4.1LG05g08510CsaV3_1G045540Cucumber (Chinese Long) v3cpecucB0874
Cp4.1LG05g08510Bhi02G001032Wax gourdcpewgoB0971
Cp4.1LG05g08510CsGy1G032220Cucumber (Gy14) v2cgybcpeB135
Cp4.1LG05g08510Carg06114Silver-seed gourdcarcpeB0038
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g08510Cucurbita pepo (Zucchini)cpecpeB494
Cp4.1LG05g08510Cucumber (Gy14) v1cgycpeB0772
Cp4.1LG05g08510Cucurbita maxima (Rimu)cmacpeB157
Cp4.1LG05g08510Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g08510Cucurbita moschata (Rifu)cmocpeB133
Cp4.1LG05g08510Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g08510Wild cucumber (PI 183967)cpecpiB703
Cp4.1LG05g08510Wild cucumber (PI 183967)cpecpiB758
Cp4.1LG05g08510Cucumber (Chinese Long) v2cpecuB701
Cp4.1LG05g08510Cucumber (Chinese Long) v2cpecuB755
Cp4.1LG05g08510Bottle gourd (USVL1VR-Ls)cpelsiB588
Cp4.1LG05g08510Bottle gourd (USVL1VR-Ls)cpelsiB627
Cp4.1LG05g08510Watermelon (Charleston Gray)cpewcgB658
Cp4.1LG05g08510Watermelon (97103) v1cpewmB744
Cp4.1LG05g08510Melon (DHL92) v3.5.1cpemeB668
Cp4.1LG05g08510Melon (DHL92) v3.5.1cpemeB686
Cp4.1LG05g08510Melon (DHL92) v3.6.1cpemedB798
Cp4.1LG05g08510Melon (DHL92) v3.6.1cpemedB818
Cp4.1LG05g08510Silver-seed gourdcarcpeB1262
Cp4.1LG05g08510Cucumber (Chinese Long) v3cpecucB0936