Cp4.1LG05g04740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g04740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 2737674 .. 2738863 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTTTCTATCGCAAGAATCCTTGTATTTTATTAGAAAAAAGCACCAGAATGGATACAAATCAATCAAAATAAAAAATTCAGAAGCTGAAAGTTTTGTTGGTGTGTGGGTGTGTACAGAAAAACAATAGGTGGAAATCTGTTCCAGAGTTTGGGGGATGGGATCACAACGCACCTGGGGCAAGCAATTATTCGGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCCAGCCTTGGAAATGAGAGGGAGATGATGGCAATGGCAGATAAACATCTTCGCCAACAGAACCACCACCACCACCGCCACCACAGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCACCACCAGCACGACCCTGTTGTCCCTGTAAGCACTTTCATCTGCTGCATCCCCTGTTCTTTTCCTACCTGAATCCCTAAAACAGATCTTTAGAAGCAAAGCTAAATTGAACAATAAATAGCACACATACATCTTCTAATCCTTGCTCTTTTATTTCTCTTATTCAGCAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGTGACGAAGAAGGCGACCCGCTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAGAGATGAGACATGTTCATCATACGGATAATTGCATCAATTTCCCCCAACCTGTATCTTGTTTTGGTTCTTCAGCATATAAAACATGGAACCTTGAATATTATATCTTATTTCATGGTGCATAACATGATAAGTAAATTATGCTATAACATAACTACATAAAACTCTGTCCTGTATCTTAAAGAGAAGTTGCTATAGATATACATGGTGGATATAGGCCATGCAATCTCAGTTATTCCGCCCACATCATCTATTCTACCCTTTTTCACAAACTACGATGAGTGAAGGTTTGTGGACCGAGAACGTTTCACCGGAGCACGGAGTGAGGACAGGTACTGAGCATCTGCCTTTCCAATTCCATCAAACAAATAGTTAAAAGCCGGCATCTCTATGTACTTCCCAGCACCTGGAACAACTTTTAGTTCATTGTTTTCCCAAACAATTCTTCCTCCAGAAATTGTCACTTCAACCTTTCCCTGTG

mRNA sequence

TTCTTTTTCTATCGCAAGAATCCTTGTATTTTATTAGAAAAAAGCACCAGAATGGATACAAATCAATCAAAATAAAAAATTCAGAAGCTGAAAGTTTTGTTGGTGTGTGGGTGTGTACAGAAAAACAATAGGTGGAAATCTGTTCCAGAGTTTGGGGGATGGGATCACAACGCACCTGGGGCAAGCAATTATTCGGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCCAGCCTTGGAAATGAGAGGGAGATGATGGCAATGGCAGATAAACATCTTCGCCAACAGAACCACCACCACCACCGCCACCACAGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCACCACCAGCACGACCCTGTTGTCCCTCAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGTGACGAAGAAGGCGACCCGCTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAGAGATGAGACATGTTCATCATACGGATAATTGCATCAATTTCCCCCAACCTGTATCTTGTTTTGGTTCTTCAGCATATAAAACATGGAACCTTGAATATTATATCTTATTTCATGGTGCATAACATGATAAGTAAATTATGCTATAACATAACTACATAAAACTCTGTCCTGTATCTTAAAGAGAAGTTGCTATAGATATACATGGTGGATATAGGCCATGCAATCTCAGTTATTCCGCCCACATCATCTATTCTACCCTTTTTCACAAACTACGATGAGTGAAGGTTTGTGGACCGAGAACGTTTCACCGGAGCACGGAGTGAGGACAGGTACTGAGCATCTGCCTTTCCAATTCCATCAAACAAATAGTTAAAAGCCGGCATCTCTATGTACTTCCCAGCACCTGGAACAACTTTTAGTTCATTGTTTTCCCAAACAATTCTTCCTCCAGAAATTGTCACTTCAACCTTTCCCTGTG

Coding sequence (CDS)

ATGATGGCAATGGCAGATAAACATCTTCGCCAACAGAACCACCACCACCACCGCCACCACAGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCACCACCAGCACGACCCTGTTGTCCCTCAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA

Protein sequence

MMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRLRHHQHDPVVPQKKKKILTYINCCIRP
Homology
[Close]
BLAST of Cp4.1LG05g04740 vs. TrEMBL
Match: A0A0A0KK09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 1   MMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRLRHHQH--------DPVVPQKK 60
           +M   DKH R Q H HHRH   H HH  ++H   ++H+  HHQH        D V P+KK
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPEKK 120

Query: 61  KKILTYINCCIRP 66
           KKILTYINCCIRP
Sbjct: 121 KKILTYINCCIRP 133

[Close]
BLAST of Cp4.1LG05g04740 vs. NCBI nr
Match: gi|778716881|ref|XP_011657609.1| (PREDICTED: protein catecholamines up [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 1   MMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRLRHHQH--------DPVVPQKK 60
           +M   DKH R Q H HHRH   H HH  ++H   ++H+  HHQH        D V P+KK
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPEKK 120

Query: 61  KKILTYINCCIRP 66
           KKILTYINCCIRP
Sbjct: 121 KKILTYINCCIRP 133

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK09_CUCSA1.1e-0752.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430670 PE=4 SV=1[more]
BLAST of Cp4.1LG05g04740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778716881|ref|XP_011657609.1|1.5e-0752.05PREDICTED: protein catecholamines up [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04740.1Cp4.1LG05g04740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g04740CmoCh02G013250Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g04740Carg02681Silver-seed gourdcarcpeB1283
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g04740Wax gourdcpewgoB0944
Cp4.1LG05g04740Cucurbita pepo (Zucchini)cpecpeB310
Cp4.1LG05g04740Cucurbita pepo (Zucchini)cpecpeB369
Cp4.1LG05g04740Cucurbita pepo (Zucchini)cpecpeB493
Cp4.1LG05g04740Cucumber (Gy14) v1cgycpeB0161
Cp4.1LG05g04740Cucurbita maxima (Rimu)cmacpeB098
Cp4.1LG05g04740Cucurbita maxima (Rimu)cmacpeB158
Cp4.1LG05g04740Cucurbita maxima (Rimu)cmacpeB586
Cp4.1LG05g04740Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g04740Cucurbita moschata (Rifu)cmocpeB074
Cp4.1LG05g04740Cucurbita moschata (Rifu)cmocpeB134
Cp4.1LG05g04740Cucurbita moschata (Rifu)cmocpeB535
Cp4.1LG05g04740Wild cucumber (PI 183967)cpecpiB744
Cp4.1LG05g04740Cucumber (Chinese Long) v2cpecuB742
Cp4.1LG05g04740Bottle gourd (USVL1VR-Ls)cpelsiB598
Cp4.1LG05g04740Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g04740Watermelon (97103) v1cpewmB723
Cp4.1LG05g04740Melon (DHL92) v3.5.1cpemeB696
Cp4.1LG05g04740Cucumber (Gy14) v2cgybcpeB137
Cp4.1LG05g04740Cucumber (Gy14) v2cgybcpeB845
Cp4.1LG05g04740Melon (DHL92) v3.6.1cpemedB829
Cp4.1LG05g04740Silver-seed gourdcarcpeB0741
Cp4.1LG05g04740Cucumber (Chinese Long) v3cpecucB0921
Cp4.1LG05g04740Cucumber (Chinese Long) v3cpecucB0877