Cp4.1LG05g04340 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g04340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAT hook, DNA-binding motif-containing protein
LocationCp4.1LG05 : 2472532 .. 2475752 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATTTATATAATTCCAAATAATTATTATTTAGCTTTAAAATCACTATTATTTAAAACCTACCAAATAAAGAAAATTGATTTTAAAATGCTCGCCCTTACAAATCCGAGGGTACAGAGCATTCGTGAAGAGGTATTTTCGATGGAGGATCAAAATCTCACGGCGGAAAGCGAATCGCTTACGGACCTGAAAAGCACTACGACCGAGATAAATGGGGCGTCGGACGACGAAGACACGTCGATCGGGAACAGCGGAATCGTCGGCGAAGGGCATCTTGAAGATTTGTCCAGCGGTGAGGTGATTTCAAAGAAGAAGAGAAGAGGAAGGCCGAGGAGAAAAGCAGCCATCGACCTGGAGAAGCCGTCATCGCCGTCATCGCAGGGGAGCCTCTCGTCGTCCGCCAATTCACGAAACACTTCGAAACGCCGCCTTGGGCGGCCGCCTGGTAGTGGTAGGTTGCAGCTTCTCGCATCTTTAGGTACGCTAGGTTTCAACTCTCGATTCCGTCAATCGGTTTTTCTTTTTCAATGCGTAACGCGCCGCCGCCGTGAAAATCGCATGTAACCGTCAGTTGTTTCTTTTCGTTTCTTGGATTAGGTCGTTCTCTATATTCTTGTTGATTTTTTTTTTCGCATTTTCACGTTAATTTTGATTTTTTTTTTCTCTCTTTCAACGGAATATATATATATTTTAAAGAGAAAAATCTATTATTCTTTATATAAACTAAGTATTTCTTCTTTTTCCTTTTTTAAACAGAACGGAATCGTAAAGTATTTTTGTTTTAATTTTTTTTTTATTATTCTTTTTGCGGCCATATTTTCTTTTTTAAAAATAAACTCAATTTTTGTTTGAAAACAATTTTATTATTTTATTTATTTTAATAAACATATAAATACTTTTTTTATTTTTTAAATATAAATAACCCAATACTTCTTATTTAACTAATTTAATATTAAATTCAAGTACCGAATAAAAAAGTTCAACATTTATTTGAAACCTTTTAAAATTAAATAATATTCCAAAAAAAATGATTATGAATTTTAAATTTCAGAATTCATTTTTAGTTTAATGAAAATCAAAGTTTTTTTTTTTTTTTTAAAAAAAAATTTCTGTTTAATATTGATTCGAACCTTGGACTTAGAACGGCGTTATCGAGATGTTTGAAATCTGTGAAGGTTAAATTCNATTTTAAATTTCAGAATTCATTTTTAGTTTAATGAAAATCAAAGTTTTTTTTTTTTTTTTAAAAAAAAATTTCTGTTTAATATTGATTCGAACCTTGGACTTAGAACGGCGTTATCGAGATGTTTGAAATCTGTGAAGGTTAAATTCGGTTTGAAATTTTATATTTATTAATAGTCTCGAATATATTTGAAGGTGGTTTTGCTTGGGACACTGCCGGCGGAAGTTTTACCCCCCACATCCTCCATATTCCAAAAGGAGAGGTAAGGAATAAATATGTATAACTCATGCTTTAATTCATAAGCTATGAAAGTTTATTGCATTTAATTATTAATTAAGATATGATATGTAATTAGTTTTATAAGTTTGTGAGATATAGGTGTCAATTCGAGCATGGTTCAATGAATTTGATACTAGTTATCATGGTAGAAGTTGATAGTTTAATATGTATAATCATTCATTTGCTTTAATCAAAATCAGACCGTCACATAAACTCTGAGTATAATTTGTTGAAGATTGTTGAGAGGGAATCCCATTGACTAAATAAAGAGACGATCATGAGTTTATAAGTAAGGAATATATCTTCATTGGTATGAGACGTTTTGGGGAAACAAAAAATAAAGTCACGAGAGTATATGTTTAAAGTAGACAATATCATACTATTACGGAAGGTCGTGCTTATGCATTGGAGAGTAATTAAATGTTAAATGCATGCAGGATATTGTGAAGGGTCTATCAAGATTCTCAAAGAAAGGTCCTCGAGCAATTTGTATAATTTCTGCTGTTGGTTCAGTTTCGAGCGTTCATCTCCGCCAAGTTGATGCGAAGCCCAACAGCACACAGAAATTCCAGGTTTGTTTATGACCAAACTATTCTTTAGTGGATGAAATAGAGTATGATGTACCACATTGGTCGGGGGACGAGAACAAAACACCCTTCATAAGGGTGTGGAAACTTTCCCCTAGCAGACGACTTTTAAAGTCTTGAGGGAAAACTCGAAAGGGAAAGCCCAAAGAATACAATATCTGCTAGTAGTGGATCTTTACACGAAGATTAAAACACTTTGTATTTATGGATATGAATGTGAATGTGCAGGGAATGTTTGAGATTCTGCGCATAACAGGGTCGTTTGTGGGACAAATGAACGGTAAACGCACTAAAGTGGGACAGGTTTCCATCTCACTCGCTCATCCTGACGGGCGAGTTTTTGGGGGCGTCGTTGCTTCTGCACTCATAGCAGCCACCCCCATTCAGGTATCTCTCATTTATTTTCAAATTTGAAAACCTTATTGCATCTTTAACATTTTAAGATTATATTTTCAACTATACTAATTCGAGTGAATGTCGAGATTAGTCGCTCGAAAAAAACTCAACTTTGTAGTAATTCAATTCAATTCTTTTCAATATACCATCGTCTCATACGGATTTGATTGTCTATAATAACACGAACAATAGAAAGTTGGAATGTACTTCTGATTAAATATAATTGTTACCCATATGATCTGATTTGGTACATGTGTTACATCATGATGAATGTTTTCAAATTATCATAATACTAATCAAATATCTTTAATATTGTATCATACCCTTGATTTTAATTTGAGATCCATGTATTGATAGATTGTTGTGGCAAGCTTTAAGCAAAAAATTAGCCCTGCAGTTAAAAGGATGCACACACCAGCTCACAACAGCCAGTCCTCAGGTATTATTATTATTATTATTATTATTATTAAATTTCATTTTGTATCTTATCTGTTTGTAAATTTTTTTTAAAAAATGTTGAATATATTCCTTGGAATAACACCAGGCACTGATGAAGAAGAAGTATGTGATGCTCCGGGTACCCCGCAGCATTAAACCACCAAAACGACACCGTTTCTTCAGCAGTTAGCAGTCTTCACCTCCAGAGGTTACATGTACTTCTCTACCTCTTCTTATCTCACACAGTCAGTCGCACACAGTGTTTGAATATTAGAAAACTCGTAGCAAAACTTCCTTTGGTGGTGATTTTATAAGAAGTTTTTATCAATTTCTAGTGT

mRNA sequence

ATTATTTATATAATTCCAAATAATTATTATTTAGCTTTAAAATCACTATTATTTAAAACCTACCAAATAAAGAAAATTGATTTTAAAATGCTCGCCCTTACAAATCCGAGGGTACAGAGCATTCGTGAAGAGGTATTTTCGATGGAGGATCAAAATCTCACGGCGGAAAGCGAATCGCTTACGGACCTGAAAAGCACTACGACCGAGATAAATGGGGCGTCGGACGACGAAGACACGTCGATCGGGAACAGCGGAATCGTCGGCGAAGGGCATCTTGAAGATTTGTCCAGCGGTGAGGTGATTTCAAAGAAGAAGAGAAGAGGAAGGCCGAGGAGAAAAGCAGCCATCGACCTGGAGAAGCCGTCATCGCCGTCATCGCAGGGGAGCCTCTCGTCGTCCGCCAATTCACGAAACACTTCGAAACGCCGCCTTGGGCGGCCGCCTGGTAGTGGTAGGTTGCAGCTTCTCGCATCTTTAGGTGGTTTTGCTTGGGACACTGCCGGCGGAAGTTTTACCCCCCACATCCTCCATATTCCAAAAGGAGAGGGAATGTTTGAGATTCTGCGCATAACAGGGTCGTTTGTGGGACAAATGAACGGTAAACGCACTAAAGTGGGACAGGTTTCCATCTCACTCGCTCATCCTGACGGGCGAGTTTTTGGGGGCGTCGTTGCTTCTGCACTCATAGCAGCCACCCCCATTCAGATTGTTGTGGCAAGCTTTAAGCAAAAAATTAGCCCTGCAGTTAAAAGGATGCACACACCAGCTCACAACAGCCAGTCCTCAGGCACTGATGAAGAAGAAGTATGTGATGCTCCGGGTACCCCGCAGCATTAAACCACCAAAACGACACCGTTTCTTCAGCAGTTAGCAGTCTTCACCTCCAGAGGTTACATGTACTTCTCTACCTCTTCTTATCTCACACAGTCAGTCGCACACAGTGTTTGAATATTAGAAAACTCGTAGCAAAACTTCCTTTGGTGGTGATTTTATAAGAAGTTTTTATCAATTTCTAGTGT

Coding sequence (CDS)

ATGCTCGCCCTTACAAATCCGAGGGTACAGAGCATTCGTGAAGAGGTATTTTCGATGGAGGATCAAAATCTCACGGCGGAAAGCGAATCGCTTACGGACCTGAAAAGCACTACGACCGAGATAAATGGGGCGTCGGACGACGAAGACACGTCGATCGGGAACAGCGGAATCGTCGGCGAAGGGCATCTTGAAGATTTGTCCAGCGGTGAGGTGATTTCAAAGAAGAAGAGAAGAGGAAGGCCGAGGAGAAAAGCAGCCATCGACCTGGAGAAGCCGTCATCGCCGTCATCGCAGGGGAGCCTCTCGTCGTCCGCCAATTCACGAAACACTTCGAAACGCCGCCTTGGGCGGCCGCCTGGTAGTGGTAGGTTGCAGCTTCTCGCATCTTTAGGTGGTTTTGCTTGGGACACTGCCGGCGGAAGTTTTACCCCCCACATCCTCCATATTCCAAAAGGAGAGGGAATGTTTGAGATTCTGCGCATAACAGGGTCGTTTGTGGGACAAATGAACGGTAAACGCACTAAAGTGGGACAGGTTTCCATCTCACTCGCTCATCCTGACGGGCGAGTTTTTGGGGGCGTCGTTGCTTCTGCACTCATAGCAGCCACCCCCATTCAGATTGTTGTGGCAAGCTTTAAGCAAAAAATTAGCCCTGCAGTTAAAAGGATGCACACACCAGCTCACAACAGCCAGTCCTCAGGCACTGATGAAGAAGAAGTATGTGATGCTCCGGGTACCCCGCAGCATTAA

Protein sequence

MLALTNPRVQSIREEVFSMEDQNLTAESESLTDLKSTTTEINGASDDEDTSIGNSGIVGEGHLEDLSSGEVISKKKRRGRPRRKAAIDLEKPSSPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTPHILHIPKGEGMFEILRITGSFVGQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAATPIQIVVASFKQKISPAVKRMHTPAHNSQSSGTDEEEVCDAPGTPQH
Homology
[Close]
BLAST of Cp4.1LG05g04340 vs. Swiss-Prot
Match: AHL7_ARATH (AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana GN=AHL7 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-11
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 136 DTAGGSFTPHILHIPKGEGMFEILRITGSFVGQMN-GKRTKVGQVSISLAHPDGRVFGGV 195
           D+ GG+ T         EG FEIL ++GSF+   N G + + G +S+SLA PDGRV GG 
Sbjct: 169 DSCGGTLTY--------EGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGG 228

Query: 196 VASALIAATPIQIVVASF 213
           VA  LIAATPIQ+VV SF
Sbjct: 229 VAGLLIAATPIQVVVGSF 238

[Close]
BLAST of Cp4.1LG05g04340 vs. Swiss-Prot
Match: AHL2_ARATH (AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana GN=AHL2 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-11
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1 

Query: 136 DTAGGSFTPHILHIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGV 195
           D++GG+ T         EG FEIL ++G+F+    +G R++ G +S+SLA PDGRV GG 
Sbjct: 196 DSSGGTLTY--------EGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGG 255

Query: 196 VASALIAATPIQIVVASFKQKISPAVKRMHTPAHNSQSS 234
           VA  L+AATPIQ+VV +F    +   +      HN  SS
Sbjct: 256 VAGLLVAATPIQVVVGTFLGGTNQQEQTPKPHNHNFMSS 286

[Close]
BLAST of Cp4.1LG05g04340 vs. Swiss-Prot
Match: AHL10_ARATH (AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 6.7e-11
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1 

Query: 137 TAGGSFTPHILHIPKGEGMFEILRITGSF-VGQMNGKRTKVGQVSISLAHPDGRVFGGVV 196
           T+GG+ T         EG FEIL ++GSF + + NG+R++ G +S+SL+ PDG V GG V
Sbjct: 210 TSGGTVTY--------EGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSV 269

Query: 197 ASALIAATPIQIVVASF--------KQKI------SPAVKR------MHTPAHNSQSSGT 250
           A  LIAA+P+QIVV SF        KQ +      SP + R      + TP+ + QS GT
Sbjct: 270 AGLLIAASPVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPS-SPQSRGT 329

[Close]
BLAST of Cp4.1LG05g04340 vs. Swiss-Prot
Match: AHL1_ARATH (AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 136 DTAGGSFTPHILHIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGV 195
           D++GG+ T         EG FEIL ++GSF+     G R++ G +S+SLA PDGRV GG 
Sbjct: 216 DSSGGTLTY--------EGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGG 275

Query: 196 VASALIAATPIQIVVASF 213
           +A  L+AA+P+Q+VV SF
Sbjct: 276 LAGLLVAASPVQVVVGSF 285

[Close]
BLAST of Cp4.1LG05g04340 vs. Swiss-Prot
Match: AHL4_ARATH (AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana GN=AHL4 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-10
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1 

Query: 137 TAGGSFTPHILHIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGVV 196
           T+GG+ T         EG FEIL +TGSF+  +  G R++ G +S+SLA  DGRVFGG +
Sbjct: 225 TSGGTLTY--------EGHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGL 284

Query: 197 ASALIAATPIQIVVASF 213
           A   IAA P+Q++V SF
Sbjct: 285 AGLFIAAGPVQVMVGSF 293

[Close]
BLAST of Cp4.1LG05g04340 vs. TrEMBL
Match: U5GMD3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20060g PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.4e-25
Identity = 109/276 (39.49%), Postives = 140/276 (50.72%), Query Frame = 1 

Query: 19  MEDQNLTAESESLTDLKSTTTE--------INGASDDE-DTSIGNSGIVGEGHLEDLSSG 78
           ME++N+    E  T + +TT +          G SD   + +    G+VG G     S G
Sbjct: 4   MEEKNIIVSDE--TPIVTTTKDHAPPGSQVATGGSDPTLEPNNPGGGVVG-GSGGSGSEG 63

Query: 79  EVISK-KKRRGRPRRKAAIDLEKPSSPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLA 138
            V S  K++RGRPR K  +D    SSP     LSSS +S    KR  GRP GSG+LQLLA
Sbjct: 64  VVESTVKRKRGRPR-KYDVDANLVSSPPPPQGLSSSLSSYE--KRGRGRPRGSGKLQLLA 123

Query: 139 SLGGFAWDTAGGSFTPHIL----------------------------------------- 198
           SLGGFA +TAGGSFTPH++                                         
Sbjct: 124 SLGGFAAETAGGSFTPHVVPVYTGEDIVSKIIELSQKGARAVCILSATGVVSSVIMRQPG 183

Query: 199 ---HIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAAT 237
               I + +G FEIL ++GSF  G+  G   K G +S+SLA PDGRVFGG VA +LIAA 
Sbjct: 184 PSGGILRYDGRFEILSLSGSFTFGETGGSNRKNGMLSVSLAKPDGRVFGGGVAGSLIAAG 243

[Close]
BLAST of Cp4.1LG05g04340 vs. TrEMBL
Match: W9SZ55_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012793 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 89/217 (41.01%), Postives = 113/217 (52.07%), Query Frame = 1 

Query: 50  TSIGNSGIVGEGHLEDLSSGEVISKKKRRGRPRRKAAID-------------LEKPS--- 109
           TS   +G    G+++ L        KK+RGRPR+  A               +++P    
Sbjct: 51  TSFSAAGSGTPGNVDSLG-------KKKRGRPRKYDADGNLRLSYARVTPPVVQQPGTTP 110

Query: 110 ---SPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTPHILHIP 169
              SP+S    SSS++S    KR  GRPPGSG  QLLASLG     TA G FTPH++ + 
Sbjct: 111 FSLSPASPSEFSSSSSS----KRGRGRPPGSGNWQLLASLGELFAATACGDFTPHVVTVA 170

Query: 170 KGEGMFEILRITGSFVGQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAATPIQIVVA 229
            GEG FEIL ++GSF    +  RT++G +S+SLA PDGRV GG +A  L AA+PIQIVV 
Sbjct: 171 SGEGRFEILSLSGSFTVIDDAVRTRIGGLSVSLAGPDGRVIGGGIAGLLTAASPIQIVVG 230

Query: 230 SFKQKISPAVKRMHTPAHNSQSSGTDEEEVCDAPGTP 248
           SF        KR H   H   S  T       A  TP
Sbjct: 231 SFMPNGYKVHKRKHHREHALASPPTSAALDTPAVATP 256

[Close]
BLAST of Cp4.1LG05g04340 vs. TrEMBL
Match: A0A103XJL4_CYNCS (AT hook, DNA-binding motif-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006112 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = 1 

Query: 42  NGASDDEDTSIGNSGIVGEGHLEDLSSGEVIS-----------KKKRRGRPRRKA----- 101
           NG   ++D   G  G  G G+ +D+S G  +S            KK+RGRPR+ A     
Sbjct: 91  NGGGGNDDVGGGGGG--GGGN-DDVSGGGGVSIPNPGSGSESVVKKKRGRPRKYAPDGSH 150

Query: 102 -AIDLEKPSSPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTP 161
            A+ L   S  +  G+ +S   S    +++ GRP GSGR Q LA++G +  ++AG +FTP
Sbjct: 151 MALGLTPVSPGAGMGTAASHDRSSPPPQKKRGRPRGSGRKQRLANVGEWMHNSAGSAFTP 210

Query: 162 HILHIPKGEGMFEILRITGSF-VGQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAAT 213
           HI+HI  GEG FEIL ++GS+ + +    R + G +SIS  + DG+V GG +   LIA++
Sbjct: 211 HIIHISVGEGRFEILCLSGSYLLAESGNPRNRTGSLSISACNADGQVIGGAIGGKLIASS 270

[Close]
BLAST of Cp4.1LG05g04340 vs. TrEMBL
Match: K7UJG3_MAIZE (Uncharacterized protein OS=Zea mays GN=LOC100191677 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1 

Query: 97  SQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTPHILHIPKGEGMF 156
           S+GS +S   + +  KR  GRPPGSG++Q LASLG +   + G  FTPH++ I  GEG F
Sbjct: 169 SEGSGASGLGAPS-EKRGRGRPPGSGKMQQLASLGKWFLGSVGTGFTPHVIIIQPGEGRF 228

Query: 157 EILRITGSF--VGQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAATPIQIVVASF 213
           EIL ++GS+  V +  G RT+ G + I+L  PD RV GG V   L+AA  +Q++V SF
Sbjct: 229 EILCLSGSYLVVDEGGGARTRSGGLCIALCGPDNRVIGGSVGGVLMAAGAVQVIVGSF 285

[Close]
BLAST of Cp4.1LG05g04340 vs. TrEMBL
Match: W1PYY9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00224930 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 76/207 (36.71%), Postives = 97/207 (46.86%), Query Frame = 1 

Query: 65  DLSSGEVISKKKRRGRPRRKAAI-DLEKPSSPSSQGSLS-SSANSRNTSKRRLGRPPGSG 124
           +L S    S KK+RGRPR+ A    L    +P     LS  S+    +SKR  GRPPGSG
Sbjct: 54  NLGSSSSDSVKKKRGRPRKYAPDGSLALALTPEDNNELSLPSSPFLFSSKRGRGRPPGSG 113

Query: 125 RLQLLASLGGFAWDTAGGSFTPHILHIPKGEGMFE--------------ILRITGSFVG- 184
           + QLLA+LG +  ++AGG+FTPH++ I  GE +                IL   G+    
Sbjct: 114 KRQLLATLGEWVANSAGGNFTPHVITISTGEDVATKILSFSQKGPRSICILSANGAISNV 173

Query: 185 ------------------------------QMNGKRTKVGQVSISLAHPDGRVFGGVVAS 225
                                            G RT+ G +SISLA PDGRV GG VA 
Sbjct: 174 TLRQPGSSGGTLTYEGRFEILSLSGSFTLADNGGSRTRTGGISISLAGPDGRVIGGGVAG 233

[Close]
BLAST of Cp4.1LG05g04340 vs. TAIR10
Match: AT4G00200.1 (AT4G00200.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 136 DTAGGSFTPHILHIPKGEGMFEILRITGSFVGQMN-GKRTKVGQVSISLAHPDGRVFGGV 195
           D+ GG+ T         EG FEIL ++GSF+   N G + + G +S+SLA PDGRV GG 
Sbjct: 169 DSCGGTLTY--------EGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGG 228

Query: 196 VASALIAATPIQIVVASF 213
           VA  LIAATPIQ+VV SF
Sbjct: 229 VAGLLIAATPIQVVVGSF 238

[Close]
BLAST of Cp4.1LG05g04340 vs. TAIR10
Match: AT4G22770.1 (AT4G22770.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1 

Query: 136 DTAGGSFTPHILHIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGV 195
           D++GG+ T         EG FEIL ++G+F+    +G R++ G +S+SLA PDGRV GG 
Sbjct: 196 DSSGGTLTY--------EGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGG 255

Query: 196 VASALIAATPIQIVVASFKQKISPAVKRMHTPAHNSQSS 234
           VA  L+AATPIQ+VV +F    +   +      HN  SS
Sbjct: 256 VAGLLVAATPIQVVVGTFLGGTNQQEQTPKPHNHNFMSS 286

[Close]
BLAST of Cp4.1LG05g04340 vs. TAIR10
Match: AT2G33620.1 (AT2G33620.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1 

Query: 137 TAGGSFTPHILHIPKGEGMFEILRITGSF-VGQMNGKRTKVGQVSISLAHPDGRVFGGVV 196
           T+GG+ T         EG FEIL ++GSF + + NG+R++ G +S+SL+ PDG V GG V
Sbjct: 210 TSGGTVTY--------EGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSV 269

Query: 197 ASALIAATPIQIVVASF--------KQKI------SPAVKR------MHTPAHNSQSSGT 250
           A  LIAA+P+QIVV SF        KQ +      SP + R      + TP+ + QS GT
Sbjct: 270 AGLLIAASPVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPS-SPQSRGT 329

[Close]
BLAST of Cp4.1LG05g04340 vs. TAIR10
Match: AT4G12080.1 (AT4G12080.1 AT-hook motif nuclear-localized protein 1)

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-12
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 136 DTAGGSFTPHILHIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGV 195
           D++GG+ T         EG FEIL ++GSF+     G R++ G +S+SLA PDGRV GG 
Sbjct: 216 DSSGGTLTY--------EGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGG 275

Query: 196 VASALIAATPIQIVVASF 213
           +A  L+AA+P+Q+VV SF
Sbjct: 276 LAGLLVAASPVQVVVGSF 285

[Close]
BLAST of Cp4.1LG05g04340 vs. TAIR10
Match: AT5G51590.1 (AT5G51590.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1 

Query: 137 TAGGSFTPHILHIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGVV 196
           T+GG+ T         EG FEIL +TGSF+  +  G R++ G +S+SLA  DGRVFGG +
Sbjct: 225 TSGGTLTY--------EGHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGL 284

Query: 197 ASALIAATPIQIVVASF 213
           A   IAA P+Q++V SF
Sbjct: 285 AGLFIAAGPVQVMVGSF 293

[Close]
BLAST of Cp4.1LG05g04340 vs. NCBI nr
Match: gi|659117497|ref|XP_008458632.1| (PREDICTED: uncharacterized protein LOC103497978 isoform X2 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-28
Identity = 79/185 (42.70%), Postives = 120/185 (64.86%), Query Frame = 1 

Query: 34  LKSTTTEINGASDDEDTSIGNSGIVGEGHLEDLSSGEVISKKKRRGRPRRKAAIDLEKPS 93
           +K  + + +  +D E  SIG+  I  E  L + + G+ ++ KK +GRPR+  A++ + PS
Sbjct: 11  VKHESPDSDNVADGEQRSIGDEAIDEEDRLGESAGGKTVTMKKIKGRPRKNDAVNGQNPS 70

Query: 94  SPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTPHILHIPKGE 153
           S         SA+S+   K  LG PPG G+LQ+LASLGG+AW+T GG FTPH++ +   E
Sbjct: 71  S---------SADSQTIPKPPLGHPPGFGKLQVLASLGGYAWETFGGDFTPHLILVAPKE 130

Query: 154 GMFEILRITG-SFVGQMNGKRTKVGQVSISLAHPDG-RVFGGVVASALIAATPIQIVVAS 213
           GMFEIL+++G S+ G        +  ++IS +  DG +VFGGVVAS++IAATP+QI++ S
Sbjct: 131 GMFEILQLSGWSYEGD------GIKSMTISFSKSDGNQVFGGVVASSIIAATPVQIIMGS 180

Query: 214 FKQKI 217
           F Q++
Sbjct: 191 FMQRV 180

[Close]
BLAST of Cp4.1LG05g04340 vs. NCBI nr
Match: gi|659117505|ref|XP_008458636.1| (PREDICTED: uncharacterized protein LOC103497979 isoform X2 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 4.7e-25
Identity = 80/172 (46.51%), Postives = 107/172 (62.21%), Query Frame = 1 

Query: 45  SDDEDTSIGNSGIVGEGHLEDLSSGEVISKKKRRGRPRRKAAIDLEKPSSPSSQGSLSSS 104
           S D D SIG+  I  E    +   G  I  KKRRGRPR+     + +P  PS+       
Sbjct: 15  SSDSD-SIGDDEIDEEHRHCEPRGGMKIPIKKRRGRPRKDNDA-VNRPHPPST------- 74

Query: 105 ANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTPHILHIPKGEGMFEILRITGS 164
           A+S+   +RR GRPPGSG  Q+LA+LGG+AW+T    FTPH++ +  GEGMFEILR+ G 
Sbjct: 75  ADSQTKPERRGGRPPGSGTSQVLATLGGYAWNTIAAQFTPHVIIVQPGEGMFEILRLFGW 134

Query: 165 FVGQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAATPIQIVVASFKQKI 217
           F       R +   ++I+ + P+G+VFGGVV S LIAATP+QI+V SF QK+
Sbjct: 135 F-----DDRGREKIITITFSKPNGQVFGGVVVSLLIAATPVQIIVGSFIQKM 172

[Close]
BLAST of Cp4.1LG05g04340 vs. NCBI nr
Match: gi|566167497|ref|XP_006384675.1| (hypothetical protein POPTR_0004s20060g [Populus trichocarpa])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 109/276 (39.49%), Postives = 140/276 (50.72%), Query Frame = 1 

Query: 19  MEDQNLTAESESLTDLKSTTTE--------INGASDDE-DTSIGNSGIVGEGHLEDLSSG 78
           ME++N+    E  T + +TT +          G SD   + +    G+VG G     S G
Sbjct: 4   MEEKNIIVSDE--TPIVTTTKDHAPPGSQVATGGSDPTLEPNNPGGGVVG-GSGGSGSEG 63

Query: 79  EVISK-KKRRGRPRRKAAIDLEKPSSPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLA 138
            V S  K++RGRPR K  +D    SSP     LSSS +S    KR  GRP GSG+LQLLA
Sbjct: 64  VVESTVKRKRGRPR-KYDVDANLVSSPPPPQGLSSSLSSYE--KRGRGRPRGSGKLQLLA 123

Query: 139 SLGGFAWDTAGGSFTPHIL----------------------------------------- 198
           SLGGFA +TAGGSFTPH++                                         
Sbjct: 124 SLGGFAAETAGGSFTPHVVPVYTGEDIVSKIIELSQKGARAVCILSATGVVSSVIMRQPG 183

Query: 199 ---HIPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAAT 237
               I + +G FEIL ++GSF  G+  G   K G +S+SLA PDGRVFGG VA +LIAA 
Sbjct: 184 PSGGILRYDGRFEILSLSGSFTFGETGGSNRKNGMLSVSLAKPDGRVFGGGVAGSLIAAG 243

[Close]
BLAST of Cp4.1LG05g04340 vs. NCBI nr
Match: gi|743796535|ref|XP_011005710.1| (PREDICTED: uncharacterized protein LOC105111913 [Populus euphratica])

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 107/277 (38.63%), Postives = 140/277 (50.54%), Query Frame = 1 

Query: 19  MEDQNLTAESESL--TDLKSTTTEINGASDDEDTSIG----NSGIVGEGHLEDLSSGEVI 78
           ME++N+    ++L  T          GA+   D ++       G+VG G     S G V 
Sbjct: 4   MEEKNIIVSDQTLIVTTKDHAPPGSQGATGGSDPTLEPNNPGGGVVG-GSGGSGSEGVVE 63

Query: 79  SK-KKRRGRPRRKAAIDLEKPSSPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLG 138
           +  K++RGRPR K  +D    SSP     LSSS +S +  KR  GRP GSG+LQLLASLG
Sbjct: 64  NTVKRKRGRPR-KYDVDANLVSSPPPPQGLSSSLSSYD--KRGRGRPRGSGKLQLLASLG 123

Query: 139 GFAWDTAGGSFTPHILH------------------------------------------- 198
           GFA +TAGGSFTPH++                                            
Sbjct: 124 GFAVETAGGSFTPHVVPVYTGEDIVSKIIELSQKGARAVCILSATGVVSSVIMRQPGPCG 183

Query: 199 -IPKGEGMFEILRITGSFV-GQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAATPIQ 241
            I + +G FEIL ++GSF  G+  G   K G +S+SLA PDGRVFGG VA +LIAA PIQ
Sbjct: 184 GILRYDGRFEILSLSGSFTFGETGGSNRKNGMLSVSLAKPDGRVFGGGVAGSLIAAGPIQ 243

[Close]
BLAST of Cp4.1LG05g04340 vs. NCBI nr
Match: gi|703160401|ref|XP_010112515.1| (hypothetical protein L484_012793 [Morus notabilis])

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 89/217 (41.01%), Postives = 113/217 (52.07%), Query Frame = 1 

Query: 50  TSIGNSGIVGEGHLEDLSSGEVISKKKRRGRPRRKAAID-------------LEKPS--- 109
           TS   +G    G+++ L        KK+RGRPR+  A               +++P    
Sbjct: 51  TSFSAAGSGTPGNVDSLG-------KKKRGRPRKYDADGNLRLSYARVTPPVVQQPGTTP 110

Query: 110 ---SPSSQGSLSSSANSRNTSKRRLGRPPGSGRLQLLASLGGFAWDTAGGSFTPHILHIP 169
              SP+S    SSS++S    KR  GRPPGSG  QLLASLG     TA G FTPH++ + 
Sbjct: 111 FSLSPASPSEFSSSSSS----KRGRGRPPGSGNWQLLASLGELFAATACGDFTPHVVTVA 170

Query: 170 KGEGMFEILRITGSFVGQMNGKRTKVGQVSISLAHPDGRVFGGVVASALIAATPIQIVVA 229
            GEG FEIL ++GSF    +  RT++G +S+SLA PDGRV GG +A  L AA+PIQIVV 
Sbjct: 171 SGEGRFEILSLSGSFTVIDDAVRTRIGGLSVSLAGPDGRVIGGGIAGLLTAASPIQIVVG 230

Query: 230 SFKQKISPAVKRMHTPAHNSQSSGTDEEEVCDAPGTP 248
           SF        KR H   H   S  T       A  TP
Sbjct: 231 SFMPNGYKVHKRKHHREHALASPPTSAALDTPAVATP 256

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AHL7_ARATH6.7e-1152.56AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana GN=AHL7 PE=2 S... [more]
AHL2_ARATH6.7e-1142.42AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana GN=AHL2 PE=2 S... [more]
AHL10_ARATH6.7e-1140.74AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1... [more]
AHL1_ARATH1.1e-1047.44AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 S... [more]
AHL4_ARATH7.4e-1048.05AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana GN=AHL4 PE=1 S... [more]
BLAST of Cp4.1LG05g04340 vs. TrEMBL
Match NameE-valueIdentityDescription
U5GMD3_POPTR7.4e-2539.49Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20060g PE=4 SV=1[more]
W9SZ55_9ROSA1.4e-2341.01Uncharacterized protein OS=Morus notabilis GN=L484_012793 PE=4 SV=1[more]
A0A103XJL4_CYNCS2.1e-1938.10AT hook, DNA-binding motif-containing protein OS=Cynara cardunculus var. scolymu... [more]
K7UJG3_MAIZE1.3e-1646.61Uncharacterized protein OS=Zea mays GN=LOC100191677 PE=4 SV=1[more]
W1PYY9_AMBTC2.8e-1636.71Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00224930 PE=4 SV=... [more]
BLAST of Cp4.1LG05g04340 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00200.13.7e-1252.56 AT hook motif DNA-binding family protein[more]
AT4G22770.13.7e-1242.42 AT hook motif DNA-binding family protein[more]
AT2G33620.13.7e-1240.74 AT hook motif DNA-binding family protein[more]
AT4G12080.16.4e-1247.44 AT-hook motif nuclear-localized protein 1[more]
AT5G51590.14.1e-1148.05 AT hook motif DNA-binding family protein[more]
BLAST of Cp4.1LG05g04340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117497|ref|XP_008458632.1|6.0e-2842.70PREDICTED: uncharacterized protein LOC103497978 isoform X2 [Cucumis melo][more]
gi|659117505|ref|XP_008458636.1|4.7e-2546.51PREDICTED: uncharacterized protein LOC103497979 isoform X2 [Cucumis melo][more]
gi|566167497|ref|XP_006384675.1|1.1e-2439.49hypothetical protein POPTR_0004s20060g [Populus trichocarpa][more]
gi|743796535|ref|XP_011005710.1|1.4e-2438.63PREDICTED: uncharacterized protein LOC105111913 [Populus euphratica][more]
gi|703160401|ref|XP_010112515.1|2.0e-2341.01hypothetical protein L484_012793 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005175PPC_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04340.1Cp4.1LG05g04340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005175PPC domainPFAMPF03479DUF296coord: 140..213
score: 1.1
NoneNo IPR availableGENE3DG3DSA:3.30.1330.80coord: 153..222
score: 7.3
NoneNo IPR availablePANTHERPTHR31500FAMILY NOT NAMEDcoord: 75..222
score: 1.2
NoneNo IPR availablePANTHERPTHR31500:SF14SUBFAMILY NOT NAMEDcoord: 75..222
score: 1.2
NoneNo IPR availableunknownSSF117856AF0104/ALDC/Ptd012-likecoord: 150..215
score: 2.33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g04340Cucsa.385430Cucumber (Gy14) v1cgycpeB1018
Cp4.1LG05g04340CmaCh02G013570Cucurbita maxima (Rimu)cmacpeB644
Cp4.1LG05g04340CmoCh02G013940Cucurbita moschata (Rifu)cmocpeB594
Cp4.1LG05g04340Cla008678Watermelon (97103) v1cpewmB745
Cp4.1LG05g04340Csa6G150520Cucumber (Chinese Long) v2cpecuB753
Cp4.1LG05g04340ClCG02G021850Watermelon (Charleston Gray)cpewcgB659
Cp4.1LG05g04340CSPI06G12200Wild cucumber (PI 183967)cpecpiB756
Cp4.1LG05g04340Lsi10G011970Bottle gourd (USVL1VR-Ls)cpelsiB591
Cp4.1LG05g04340MELO3C021460.2Melon (DHL92) v3.6.1cpemedB800
Cp4.1LG05g04340CsaV3_6G014640Cucumber (Chinese Long) v3cpecucB0934
Cp4.1LG05g04340Bhi10G000069Wax gourdcpewgoB0946
Cp4.1LG05g04340Carg02607Silver-seed gourdcarcpeB1284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g04340Cucurbita pepo (Zucchini)cpecpeB310
Cp4.1LG05g04340Cucurbita pepo (Zucchini)cpecpeB315
Cp4.1LG05g04340Cucurbita pepo (Zucchini)cpecpeB420
Cp4.1LG05g04340Cucurbita maxima (Rimu)cmacpeB590
Cp4.1LG05g04340Cucurbita maxima (Rimu)cmacpeB886
Cp4.1LG05g04340Cucurbita moschata (Rifu)cmocpeB539
Cp4.1LG05g04340Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g04340Cucurbita moschata (Rifu)cmocpeB824
Cp4.1LG05g04340Wild cucumber (PI 183967)cpecpiB762
Cp4.1LG05g04340Cucumber (Chinese Long) v2cpecuB759
Cp4.1LG05g04340Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g04340Watermelon (Charleston Gray)cpewcgB675
Cp4.1LG05g04340Watermelon (97103) v1cpewmB722
Cp4.1LG05g04340Watermelon (97103) v1cpewmB723
Cp4.1LG05g04340Melon (DHL92) v3.5.1cpemeB670
Cp4.1LG05g04340Melon (DHL92) v3.5.1cpemeB705
Cp4.1LG05g04340Cucumber (Gy14) v2cgybcpeB865
Cp4.1LG05g04340Cucumber (Gy14) v2cgybcpeB856
Cp4.1LG05g04340Melon (DHL92) v3.6.1cpemedB839
Cp4.1LG05g04340Silver-seed gourdcarcpeB0478
Cp4.1LG05g04340Silver-seed gourdcarcpeB0583
Cp4.1LG05g04340Silver-seed gourdcarcpeB1283
Cp4.1LG05g04340Cucumber (Chinese Long) v3cpecucB0942