Cp4.1LG05g03150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g03150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA topoisomerase 6 subunit A
LocationCp4.1LG05 : 2011727 .. 2014533 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACGACGGGTTTATTCAAATCCTCCATGAGATTTTTCTCCGATCAAGAGCTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTATGATTTTCGCTTCATCGTCATCTTCTATGATCTCTGCTCGGTGTTCTTTCATCTCAAGTATTGATTTCGAATAGGTCCTTGCGAGAATTCAAGTTGCGGTCCTCAATTTCCTCAGAATTCTCAGTTCCTCTACTCCTGCCATCTCAAATCTTCCTCTGGTACGATTTCTAACTAAGAAACGAGACGGTATGAGATGTATGAACTTCGAGTTCTAGATCTTTCCGCTTTTACAATCGGATGCTGTTCTCTGTTACTACTACTAAGACGGGAATAATATACCGATTGGATAGATTGATCGAAGTTCGAGCAACAGCCGAGTTAATCAAGGAATTTTAACCGATGAATCTTGGATTTTCCTTTCGCACTCCTTTTGTACGCGGTCTTTGATGAGAGCCAATGCTGCTAAGGCCTTTGTTAGAGGTATTGTAAACCAAGCCTAATCTTCGACGCGCAGAATTGTTTGATGAAAAATTTGTTAGCCTCTGCTGTGCTCTCATTCCATTTTTTCCCTATTTTGTGGTGCAGTATGGAAGCTGATGGAGATGTGTTCTCAGATCTTGCTTCAGGAAAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTGCTCTGTGATTCACCTGCTTATTTCCCCACTCAGTTGCATGTCAATAGAACAATTCAAGGTGATGTTGTTCAACAAACAAAAACTGACTTGTTTAAAACCTAAAACTGCATCGAACATGGTAACCAAATCTTAGTAGTTTTATTGCAGATGTTGTAGCATTACTTCGATGCAGCCGTTTCAGCCTTGGAGTTATGGCATCTAGCAGGGGACTTGTCGCCGGCCGTCTTTTGCTTCAGGCACATTGTTATGTTTATAAATTTGGCTATTTACACAATATGCATGAAATGGAAATTCGCTTATATAGTGCATTGAGTCCCTCTTGTTCTGCTTTCACATGACAAATACATCGAAAATCCTTGAAATCAGGCAATTGATAATGCATGTATAGTTCTATTTCTTGGTATCTGGACAAGGCGCACTTCTAAGGTTTCTTCTATTGAACCAAATTATTGAATATCGAATCCTTTCTGAACAATTTCAATTGCTGTAGGAGCCAGAACAAGAAACTGTGGACTGCGCTGCCTGTGGTTCTTCTGGATATGCCATTTCTGGTGACCTGGACCTGCTGCAGAAGTTGACTCTGAAGACTGACGCTCGGTATGTAATTGTCATCGAAAAGGTAATTTCAGTTTCATAGATTATGACTTGCTCATCAACTATGATTTTGAAGGCAATAATGTGGGAATTTAATGAATCATAAGTCGTGAACATGTGTCAACTGTCAAACATTATTGGTTATACAGCATGCCATCTTCCAGCGGCTGGCGGAGGATCGAGTTTTCAATCACATTCCCAGTATTCTTATCACTGCCAAAGGATATCCAGACATAGCAACAAGGTAAGTTTGTTCAACTAGTTCCGAAGATTGCAGTATTCTTACCAATCCCTTCTTGGCAGGCACGACCAGATTTTATGAACTAACTACCCCTTCTCAGGTATTTTCTTCACAGAATCAGCAAAACGTTTCCCCACCTGCCAATTTTCGGCCTTGTTGATTGGTATGATCCTCTTTAACATCAACTCAGCAACAGATTGTAGAATTATCTTCTCATGTTTAGCTTCTGGGGTTCTTAAGGAACCCTGCTGGGTTGGCTANGTAGAATTATCTTCTCACGTTTAGCTTCTGGGGTTCTTAAGGAACCCTGCTGGGTTGGCTATATTATGTACCTTCAAGTATGGAAGTATCGGGATGGGCTTAGAGGCATACAGATACGGTGGGTCTCAGTCGTTTGATTGCCACATCCATTTCTAATTCAGATCATAAAGCTGAAGAATCTGTTTACTTTATTTACCAGCTTGCAATGTAAAATGGCTAGGCATGCGAGGAGACGATGTACAACTTATACCACAAGAATCTTTGGTTTCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCGGAAATATTACAGGTATCGTACAACAATCCACACCTATTGATGGTTTGGCCTTTTTAGGTTATCAAAATCTAAGGCTATTAAACCGCAACAGGAGAATTATAGAGAAGAGCTGACCTTAATGGTTGAGGGAGGGCAAAAGGCCGAACTTGAAGCTTTGTACCACAATGGATTTGATTACTTGGAGAAGTACCTAGTTAAAAAGATTATTCAATTTAATTACATCTGACATTATTTTCAATCTACAGAAGTAGATACAAATAAAGGGCTGTTCGGATACTTTCCAAGAAGCATATGAAATTTAATTGGAACTTGTAGCAGCCAAATTTTGATATAAATTAGAATCCAACACCATAATCTAGAGAGCGTTACTAATACAAATATTAAATCTTTCTATCATGGCCTCTGCCTACTTATAATCAGCCGTAGGTTGAGACTAAAGAAATAAATCGTTGACGGAACAAAATTCAGTTTAAAACAAGTTGCCACACAAGAGAGCTCGATATAATATTTGTCCTCTAATCTCTCTGCAATATACATCGCCACAGGTATTGCGTACTACACTACAAAATTGTCAACTACTCCTTCGACCGCAGAGTTACTCTTTTCCCTTCTACCAAAAACTTCACACTGCTCTCAAGCTGCAACCACAAAAATAAAAAATAAAACCAATTGCCATCGAGGAATTTTTATATTCCAATGAA

mRNA sequence

ATGGAGACGACGGGTTTATTCAAATCCTCCATGAGATTTTTCTCCGATCAAGAGCTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTCCTTGCGAGAATTCAAGTTGCGGTCCTCAATTTCCTCAGAATTCTCAGTTCCTCTACTCCTGCCATCTCAAATCTTCCTCTGATTGATCGAAGTTCGAGCAACAGCCGAGTTAATCAAGGAATTTTAACCGATGAATCTTGGATTTTCCTTTCGCACTCCTTTTGTACGCGGTCTTTGATGAGAGCCAATGCTGCTAAGGCCTTTGTTAGAGTATGGAAGCTGATGGAGATGTGTTCTCAGATCTTGCTTCAGGAAAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTGCTCTGTGATTCACCTGCTTATTTCCCCACTCAGTTGCATGTCAATAGAACAATTCAAGATGTTGTAGCATTACTTCGATGCAGCCGTTTCAGCCTTGGAGTTATGGCATCTAGCAGGGGACTTGTCGCCGGCCGTCTTTTGCTTCAGGCACATTGTTATGAGCCAGAACAAGAAACTGTGGACTGCGCTGCCTGTGGTTCTTCTGGATATGCCATTTCTGGTGACCTGGACCTGCTGCAGAAGTTGACTCTGAAGACTGACGCTCGGTATGTAATTGTCATCGAAAAGCATGCCATCTTCCAGCGGCTGGCGGAGGATCGAGTTTTCAATCACATTCCCAGTATTCTTATCACTGCCAAAGGATATCCAGACATAGCAACAAGGTATTTTCTTCACAGAATCAGCAAAACGTTTCCCCACCTGCCAATTTTCGGCCTTGTTGATTGGAACCCTGCTGGGTTGGCTATATTATGTACCTTCAAGTATGGAAGTATCGGGATGGGCTTAGAGGCATACAGATACGCTTGCAATGTAAAATGGCTAGGCATGCGAGGAGACGATGTACAACTTATACCACAAGAATCTTTGGTTTCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCGGAAATATTACAGGAGAATTATAGAGAAGAGCTGACCTTAATGGTTGAGGGAGGGCAAAAGGCCGAACTTGAAGCTTTGTACCACAATGGATTTGATTACTTGGAGAAGTACCTAGTTAAAAAGATTATTCAATTTAATTACATCTGACATTATTTTCAATCTACAGAAGTAGATACAAATAAAGGGCTGTTCGGATACTTTCCAAGAAGCATATGAAATTTAATTGGAACTTGTAGCAGCCAAATTTTGATATAAATTAGAATCCAACACCATAATCTAGAGAGCGTTACTAATACAAATATTAAATCTTTCTATCATGGCCTCTGCCTACTTATAATCAGCCGTAGGTTGAGACTAAAGAAATAAATCGTTGACGGAACAAAATTCAGTTTAAAACAAGTTGCCACACAAGAGAGCTCGATATAATATTTGTCCTCTAATCTCTCTGCAATATACATCGCCACAGGTATTGCGTACTACACTACAAAATTGTCAACTACTCCTTCGACCGCAGAGTTACTCTTTTCCCTTCTACCAAAAACTTCACACTGCTCTCAAGCTGCAACCACAAAAATAAAAAATAAAACCAATTGCCATCGAGGAATTTTTATATTCCAATGAA

Coding sequence (CDS)

ATGGAGACGACGGGTTTATTCAAATCCTCCATGAGATTTTTCTCCGATCAAGAGCTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTCCTTGCGAGAATTCAAGTTGCGGTCCTCAATTTCCTCAGAATTCTCAGTTCCTCTACTCCTGCCATCTCAAATCTTCCTCTGATTGATCGAAGTTCGAGCAACAGCCGAGTTAATCAAGGAATTTTAACCGATGAATCTTGGATTTTCCTTTCGCACTCCTTTTGTACGCGGTCTTTGATGAGAGCCAATGCTGCTAAGGCCTTTGTTAGAGTATGGAAGCTGATGGAGATGTGTTCTCAGATCTTGCTTCAGGAAAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTGCTCTGTGATTCACCTGCTTATTTCCCCACTCAGTTGCATGTCAATAGAACAATTCAAGATGTTGTAGCATTACTTCGATGCAGCCGTTTCAGCCTTGGAGTTATGGCATCTAGCAGGGGACTTGTCGCCGGCCGTCTTTTGCTTCAGGCACATTGTTATGAGCCAGAACAAGAAACTGTGGACTGCGCTGCCTGTGGTTCTTCTGGATATGCCATTTCTGGTGACCTGGACCTGCTGCAGAAGTTGACTCTGAAGACTGACGCTCGGTATGTAATTGTCATCGAAAAGCATGCCATCTTCCAGCGGCTGGCGGAGGATCGAGTTTTCAATCACATTCCCAGTATTCTTATCACTGCCAAAGGATATCCAGACATAGCAACAAGGTATTTTCTTCACAGAATCAGCAAAACGTTTCCCCACCTGCCAATTTTCGGCCTTGTTGATTGGAACCCTGCTGGGTTGGCTATATTATGTACCTTCAAGTATGGAAGTATCGGGATGGGCTTAGAGGCATACAGATACGCTTGCAATGTAAAATGGCTAGGCATGCGAGGAGACGATGTACAACTTATACCACAAGAATCTTTGGTTTCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCGGAAATATTACAGGAGAATTATAGAGAAGAGCTGACCTTAATGGTTGAGGGAGGGCAAAAGGCCGAACTTGAAGCTTTGTACCACAATGGATTTGATTACTTGGAGAAGTACCTAGTTAAAAAGATTATTCAATTTAATTACATCTGA

Protein sequence

METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEALYHNGFDYLEKYLVKKIIQFNYI
Homology
[Close]
BLAST of Cp4.1LG05g03150 vs. Swiss-Prot
Match: SPO12_ARATH (Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 2.1e-157
Identity = 279/387 (72.09%), Postives = 329/387 (85.01%), Query Frame = 1 

Query: 2   ETTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRS 61
           E++GL  SSM+FFSDQ L YADIL P E  ARI+V+VLN LRIL+S  PAIS+L LI+R 
Sbjct: 3   ESSGL--SSMKFFSDQHLSYADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLINRK 62

Query: 62  SSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQR 121
            SNS +N+GILTD S+IFLS SF   SL  A  AKAFVRVWK+ME+C QILLQEKRVTQR
Sbjct: 63  RSNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQR 122

Query: 122 ELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYE 181
           ELFYKLLCDSP YF +Q+ VNR++QDVVALLRCSR+SLG+MASSRGLVAGRL LQ    E
Sbjct: 123 ELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQ----E 182

Query: 182 PEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPS 241
           P +E VDC+ACGSSG+AI+GDL+LL    ++TDARY+I++EKHAIF RL EDRVFNHIP 
Sbjct: 183 PGKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPC 242

Query: 242 ILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRY 301
           + ITAKGYPDIATR+FLHR+S TFP LPI  LVDWNPAGLAILCTFK+GSIGMGLEAYRY
Sbjct: 243 VFITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRY 302

Query: 302 ACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKA 361
           ACNVKW+G+RGDD+ LIP+ESLV LKP+D QIAKSL+SS+ILQENY EEL+LMV+ G++A
Sbjct: 303 ACNVKWIGLRGDDLNLIPEESLVPLKPKDSQIAKSLLSSKILQENYIEELSLMVQTGKRA 362

Query: 362 ELEALYHNGFDYLEKYLVKKIIQFNYI 389
           E+EALY +G++YL KY+  KI+Q  YI
Sbjct: 363 EIEALYCHGYNYLGKYIATKIVQGKYI 383

[Close]
BLAST of Cp4.1LG05g03150 vs. Swiss-Prot
Match: SPO12_ORYSI (Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. indica GN=SPO11-2 PE=1 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 3.2e-137
Identity = 247/390 (63.33%), Postives = 315/390 (80.77%), Query Frame = 1 

Query: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSS-STPAISNLPLID 60
           M   G+  +S+ F +D+ LC ADIL P EV ARI+VAVLNFL  L+  + PAIS LPLI 
Sbjct: 1   MAEAGVAAASL-FGADRRLCSADILPPAEVRARIEVAVLNFLAALTDPAAPAISALPLIS 60

Query: 61  RSSSNSRVNQGILTDE-SWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRV 120
           R ++N  + + +L D+ S ++LS++ C RSL RAN AKAFVRVWK+MEMC +IL + K V
Sbjct: 61  RGAANRGLRRALLRDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLV 120

Query: 121 TQRELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAH 180
           T RELFY LL +SP YF  Q HVN+T+QDVV+LLRC+R SLG+MASSRG + GRL+LQ  
Sbjct: 121 TLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVLQG- 180

Query: 181 CYEPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNH 240
              PE+E VDC+  G SG+AI+GDL++L KL   +DARY+IV+EK AIFQRLAEDR+++H
Sbjct: 181 ---PEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSH 240

Query: 241 IPSILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEA 300
           +P ILITAKGYPD+ATR+ LHR+S+T+P++PIF LVDWNPAGLAILCT+KYGSI MGLE+
Sbjct: 241 LPCILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLES 300

Query: 301 YRYACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGG 360
           YRYACNVKWLG+RGDD+QLIPQ +   LKPRDLQIAKSL+SS+ LQ+ +R ELTLM+E G
Sbjct: 301 YRYACNVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETG 360

Query: 361 QKAELEALYHNGFDYLEKYLVKKIIQFNYI 389
           ++AE+EALY +GFD+L KY+ +KI+Q +YI
Sbjct: 361 KRAEIEALYSHGFDFLGKYVARKIVQGDYI 385

[Close]
BLAST of Cp4.1LG05g03150 vs. Swiss-Prot
Match: SPO12_ORYSJ (Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. japonica GN=SPO11-2 PE=2 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 7.2e-137
Identity = 246/390 (63.08%), Postives = 315/390 (80.77%), Query Frame = 1 

Query: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSS-STPAISNLPLID 60
           M   G+  +S+ F +D+ LC ADIL P EV ARI+VAVLNFL  L+  + PAIS LPLI 
Sbjct: 1   MAEAGVAAASL-FGADRRLCSADILPPAEVRARIEVAVLNFLAALTDPAAPAISALPLIS 60

Query: 61  RSSSNSRVNQGILTDE-SWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRV 120
           R ++N  + + +L D+ S ++LS++ C RSL RAN AKAFVRVWK+MEMC +IL + K V
Sbjct: 61  RGAANRGLRRALLRDDVSSVYLSYASCKRSLTRANDAKAFVRVWKVMEMCYKILGEGKLV 120

Query: 121 TQRELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAH 180
           T RELFY LL +SP YF  Q HVN+T+QDVV+LLRC+R SLG+MASSRG + GRL++Q  
Sbjct: 121 TLRELFYTLLSESPTYFTCQRHVNQTVQDVVSLLRCTRQSLGIMASSRGALIGRLVVQG- 180

Query: 181 CYEPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNH 240
              PE+E VDC+  G SG+AI+GDL++L KL   +DARY+IV+EK AIFQRLAEDR+++H
Sbjct: 181 ---PEEEHVDCSILGPSGHAITGDLNVLSKLIFSSDARYIIVVEKDAIFQRLAEDRIYSH 240

Query: 241 IPSILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEA 300
           +P ILITAKGYPD+ATR+ LHR+S+T+P++PIF LVDWNPAGLAILCT+KYGSI MGLE+
Sbjct: 241 LPCILITAKGYPDLATRFILHRLSQTYPNMPIFALVDWNPAGLAILCTYKYGSISMGLES 300

Query: 301 YRYACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGG 360
           YRYACNVKWLG+RGDD+QLIPQ +   LKPRDLQIAKSL+SS+ LQ+ +R ELTLM+E G
Sbjct: 301 YRYACNVKWLGLRGDDLQLIPQSAYQELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETG 360

Query: 361 QKAELEALYHNGFDYLEKYLVKKIIQFNYI 389
           ++AE+EALY +GFD+L KY+ +KI+Q +YI
Sbjct: 361 KRAEIEALYSHGFDFLGKYVARKIVQGDYI 385

[Close]
BLAST of Cp4.1LG05g03150 vs. Swiss-Prot
Match: TOP6A_ARATH (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.7e-42
Identity = 108/332 (32.53%), Postives = 182/332 (54.82%), Query Frame = 1 

Query: 63  SNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRE 122
           S +  NQ  + +   I L      R     ++ +      +++ +  Q+ L+   VT+R+
Sbjct: 108 SRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRD 167

Query: 123 LFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEP 182
           LFY         F  Q   +  + DV  +L C+R SL V+A+ +G+V GRL+     +  
Sbjct: 168 LFYT----DVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLI-----FSD 227

Query: 183 EQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSI 242
             + +DC   G  G AI  ++D +  +  ++DA +++++EK A + RLAEDR +N  P I
Sbjct: 228 NGDMIDCTKMGMGGKAIPPNIDRVGDM--QSDAMFILLVEKDAAYMRLAEDRFYNRFPCI 287

Query: 243 LITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYA 302
           ++TAKG PD+ATR FL ++ K    LP+  LVD +P GL IL  +  GS  M  ++    
Sbjct: 288 IVTAKGQPDVATRLFLRKM-KMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLT 347

Query: 303 C-NVKWLGMRGDDVQ--LIPQESLVSLKPRDLQIAKSLMSSEILQEN--YREELTLMVEG 362
             ++KWLG+R  D+    IP++  + +  +D++  K ++  + +++N  + EEL LMV+ 
Sbjct: 348 TPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKT 407

Query: 363 GQKAELEALYHNGFDYL-EKYLVKKIIQFNYI 389
            QKAE++AL   GF YL E YL  K+ Q +++
Sbjct: 408 KQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 427

[Close]
BLAST of Cp4.1LG05g03150 vs. Swiss-Prot
Match: TOP6A_ORYSJ (Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica GN=SPO11-3 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-41
Identity = 111/332 (33.43%), Postives = 178/332 (53.61%), Query Frame = 1 

Query: 63  SNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRE 122
           S +  NQ  L D   I L      R       A+      +++ +   +L +   VT+R+
Sbjct: 123 SRAASNQVYLPDLDRIVLVRRESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRD 182

Query: 123 LFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEP 182
           LFY         F  Q   +  + DV  +L C+R SL V+AS +G+V GRL      +  
Sbjct: 183 LFYT----DVKLFGDQAQSDAVLDDVSCMLGCTRSSLHVVASEKGVVVGRLT-----FAD 242

Query: 183 EQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSI 242
           + + +DC   G  G AI  ++D +  +  ++DA +++++EK A F RLAEDR +N  P I
Sbjct: 243 DGDRIDCTRMGVGGKAIPPNIDRVSGI--ESDALFILLVEKDAAFMRLAEDRFYNRFPCI 302

Query: 243 LITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYA 302
           ++TAKG PD+ATR FL R+ K    LP+  LVD +P GL IL  +  GS  M  ++    
Sbjct: 303 ILTAKGQPDVATRLFLRRL-KVELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSANLT 362

Query: 303 C-NVKWLGMRGDDVQ--LIPQESLVSLKPRDLQIAKSLMSSEILQEN--YREELTLMVEG 362
             ++KWLG+R  D+    +P++  + +   D+++ K L+  + +++N  + +EL  M+  
Sbjct: 363 TPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQNEGWVKELETMLRT 422

Query: 363 GQKAELEALYHNGFDYL-EKYLVKKIIQFNYI 389
            QKAE++AL   GF YL E YL  K+ Q ++I
Sbjct: 423 RQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]
BLAST of Cp4.1LG05g03150 vs. TrEMBL
Match: A0A0A0KNU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152220 PE=4 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 8.1e-196
Identity = 344/388 (88.66%), Postives = 369/388 (95.10%), Query Frame = 1 

Query: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDR 60
           ME  GLF+SSMRFFSDQELCYADILTPQEV+ARIQVAVLNFLRIL+SS+PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILNSSSPAISNLPLIDR 60

Query: 61  SSSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQ 120
            SSNSRV+QGILTD+SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQIL+Q+K+VTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKKVTQ 120

Query: 121 RELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCY 180
           RELFYKLLCDSP YF TQLHVNRTIQDVVALL+CSR+SLG+MASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLLCDSPVYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQ---- 180

Query: 181 EPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIP 240
           EPEQE VDC ACGSSGY ISGDLDLLQ LTLKTDARY+IVIEKHAIFQRLA+DRVFN IP
Sbjct: 181 EPEQEVVDCTACGSSGYPISGDLDLLQTLTLKTDARYIIVIEKHAIFQRLADDRVFNRIP 240

Query: 241 SILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYR 300
           SILITAKGYPD+ATRYFLH+I KTF HLP+FGLVDWNPAGLAILCTFKYGSIGMGLEAYR
Sbjct: 241 SILITAKGYPDLATRYFLHKICKTFSHLPMFGLVDWNPAGLAILCTFKYGSIGMGLEAYR 300

Query: 301 YACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQK 360
           YACNVKWLG+RGDD+QLIPQESLV LKPRDLQIAKSL+SS+ILQENYR+ELTLMVE GQK
Sbjct: 301 YACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLLSSKILQENYRQELTLMVERGQK 360

Query: 361 AELEALYHNGFDYLEKYLVKKIIQFNYI 389
           AELEALYHNGFDYLEKY+VKKIIQF+YI
Sbjct: 361 AELEALYHNGFDYLEKYIVKKIIQFSYI 384

[Close]
BLAST of Cp4.1LG05g03150 vs. TrEMBL
Match: A0A0D2PBJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G137600 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 1.2e-170
Identity = 297/383 (77.55%), Postives = 342/383 (89.30%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L KSSM+FFSDQ+LC+ADIL P EV ARIQVAVLNFL+ILSS  PAIS+LPLI+R SSNS
Sbjct: 4   LSKSSMKFFSDQQLCFADILLPHEVQARIQVAVLNFLKILSSPDPAISDLPLINRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV++GILTD SWIFLSHSFC+RSLM+ANA KAF+RVWK+MEMC + L QEKRVTQRELFY
Sbjct: 64  RVSEGILTDVSWIFLSHSFCSRSLMKANATKAFIRVWKVMEMCFEFLTQEKRVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLCDSP YF +QL VNRTIQDVVALLRCSR+SLG+MASS+GLVAGR+LLQ    EP QE
Sbjct: 124 KLLCDSPHYFSSQLQVNRTIQDVVALLRCSRYSLGIMASSKGLVAGRILLQ----EPNQE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            VDC+ACGSSGYAISGDL+LL+ L +KTDARY++V+EKHAIFQRLAED VFN IPSIL+T
Sbjct: 184 AVDCSACGSSGYAISGDLNLLESLIMKTDARYIVVVEKHAIFQRLAEDHVFNQIPSILLT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHR+S+ FP LPI  LVDWNPAGLAIL T+K+GSIGMGLEAYRYACNV
Sbjct: 244 AKGYPDIATRFLLHRVSRAFPDLPILALVDWNPAGLAILSTYKFGSIGMGLEAYRYACNV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+RGDD+QLIPQ+SL  LKPRDLQIA+SL+SS  LQ+NYR+EL +M++ GQ+AE+EA
Sbjct: 304 KWLGLRGDDLQLIPQQSLAPLKPRDLQIARSLISSTTLQDNYRQELAVMMQSGQRAEIEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           LY NG+DYL KYL KKI+Q NYI
Sbjct: 364 LYFNGYDYLGKYLAKKIVQANYI 382

[Close]
BLAST of Cp4.1LG05g03150 vs. TrEMBL
Match: V4TS49_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024616mg PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 1.7e-169
Identity = 296/383 (77.28%), Postives = 343/383 (89.56%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L KSS+ FF+DQ+LC ADIL+P EV ARI+V+V+NFL+IL+S  PAIS+LPLI+R SSNS
Sbjct: 4   LSKSSLNFFADQQLCSADILSPLEVRARIEVSVINFLKILNSPDPAISDLPLINRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV+QG+LTD SWIFLSHSFCTRSL ++NAAKAFVRVWK+ME C QIL QEKRVTQRELFY
Sbjct: 64  RVSQGLLTDVSWIFLSHSFCTRSLTKSNAAKAFVRVWKVMETCFQILSQEKRVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLCDSP YF +QL VNRTIQDV+ALL CSRFSLG++ASSRGLVAGRL+LQ    EP QE
Sbjct: 124 KLLCDSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSRGLVAGRLMLQ----EPNQE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            +DC+ACGSSGY+ISGDL LL+KL LKTDARY+IV+EKHAIFQRL ED VFN IPSILIT
Sbjct: 184 VIDCSACGSSGYSISGDLSLLEKLDLKTDARYIIVVEKHAIFQRLTEDFVFNQIPSILIT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHR+++ FP LPI  LVDWNPAGLAILCTFK+GSIGMG+EAYRYACNV
Sbjct: 244 AKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGMEAYRYACNV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+RGDDVQLIP++SL+ LKPRDLQIA+SLMSSEILQENY+EEL+LMV  GQ+AE+EA
Sbjct: 304 KWLGLRGDDVQLIPEQSLLPLKPRDLQIARSLMSSEILQENYKEELSLMVHNGQRAEVEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           LY +G+DYL KY+ KKI+Q +YI
Sbjct: 364 LYFHGYDYLGKYIAKKIVQADYI 382

[Close]
BLAST of Cp4.1LG05g03150 vs. TrEMBL
Match: A0A061G5K0_THECC (Sporulation 11-2 OS=Theobroma cacao GN=TCM_016342 PE=4 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 2.5e-168
Identity = 292/383 (76.24%), Postives = 339/383 (88.51%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L KSSM+FFSDQ+LCYAD+L P EV ARIQVAVLNFL+IL+S  PAISNLPLI+R SSNS
Sbjct: 4   LRKSSMKFFSDQQLCYADVLHPHEVRARIQVAVLNFLKILNSPDPAISNLPLINRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV +G+ T+ SW+FLSHSFC RSLMRANAAKAF+RVWK+MEMC +IL+++K+VTQRELFY
Sbjct: 64  RVREGLFTEVSWLFLSHSFCQRSLMRANAAKAFIRVWKVMEMCFEILIEDKKVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLCDSP YF +QL VNRTIQDVVALLRCSR SLG+MASS+GLVAGR+L Q    EP QE
Sbjct: 124 KLLCDSPDYFSSQLQVNRTIQDVVALLRCSRNSLGIMASSKGLVAGRILFQ----EPNQE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            VDC+ACGSSGYAISGDL LL  L +KTDARY+IV+EKHA+FQRLAED VFN IPSIL+T
Sbjct: 184 VVDCSACGSSGYAISGDLKLLDSLIMKTDARYIIVVEKHAVFQRLAEDHVFNQIPSILLT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHR+S+ FP LPI  LVDWNPAGLAILCT+K+GSIGMGLEAYRYACNV
Sbjct: 244 AKGYPDIATRFLLHRMSRAFPDLPILALVDWNPAGLAILCTYKFGSIGMGLEAYRYACNV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+RGDD+QLIP++SL  LKPRDLQIAK L+SS ILQENYREEL LM++ G++AE+EA
Sbjct: 304 KWLGLRGDDLQLIPEQSLAPLKPRDLQIAKGLISSVILQENYREELALMMQSGKRAEIEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           LY +G+DYL KY+ KKI+Q +YI
Sbjct: 364 LYFHGYDYLGKYIAKKIVQASYI 382

[Close]
BLAST of Cp4.1LG05g03150 vs. TrEMBL
Match: A0A067KSH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11275 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.1e-167
Identity = 296/383 (77.28%), Postives = 340/383 (88.77%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L +SS++FFSDQ+LCYADIL+P EV ARI+VAVLNFLRIL+S  PAIS+LPLI R SSNS
Sbjct: 4   LRRSSLKFFSDQQLCYADILSPSEVRARIEVAVLNFLRILTSPHPAISDLPLIKRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV++G++TD S IFLSHSFCTRSL RANAAKAFVRVWK+MEMC QIL+QEKRVTQRELFY
Sbjct: 64  RVSRGLMTDLSCIFLSHSFCTRSLRRANAAKAFVRVWKVMEMCFQILIQEKRVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLC SP YF +QL VNRTIQDVV LLRCSR+SLG+MASSRG+V+GRLLLQ    EP QE
Sbjct: 124 KLLCVSPDYFSSQLQVNRTIQDVVGLLRCSRYSLGIMASSRGIVSGRLLLQ----EPNQE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            VDC  CGSSGYAISGDL+LL KL ++TDARY+IV+EKHAIFQRLAEDR+FN IPSILIT
Sbjct: 184 VVDCTECGSSGYAISGDLNLLDKLVMRTDARYIIVVEKHAIFQRLAEDRIFNQIPSILIT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHRIS+ FP LPIF +VDWNPAGLAI+CTFK+GSIGMGLEAYRYAC V
Sbjct: 244 AKGYPDIATRFLLHRISRLFPELPIFAVVDWNPAGLAIVCTFKFGSIGMGLEAYRYACKV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+R DD+ L+P+E+LV LK RDLQIAKSLMSSEIL ENYREE+ LMVE G++AE+EA
Sbjct: 304 KWLGLRRDDLALMPEEALVPLKARDLQIAKSLMSSEILPENYREEVALMVESGKRAEIEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           L+ +G+DYL KY+ KKI+Q NYI
Sbjct: 364 LFFHGYDYLGKYIAKKIVQANYI 382

[Close]
BLAST of Cp4.1LG05g03150 vs. TAIR10
Match: AT1G63990.1 (AT1G63990.1 sporulation 11-2)

HSP 1 Score: 556.6 bits (1433), Expect = 1.2e-158
Identity = 279/387 (72.09%), Postives = 329/387 (85.01%), Query Frame = 1 

Query: 2   ETTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRS 61
           E++GL  SSM+FFSDQ L YADIL P E  ARI+V+VLN LRIL+S  PAIS+L LI+R 
Sbjct: 3   ESSGL--SSMKFFSDQHLSYADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLINRK 62

Query: 62  SSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQR 121
            SNS +N+GILTD S+IFLS SF   SL  A  AKAFVRVWK+ME+C QILLQEKRVTQR
Sbjct: 63  RSNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQR 122

Query: 122 ELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYE 181
           ELFYKLLCDSP YF +Q+ VNR++QDVVALLRCSR+SLG+MASSRGLVAGRL LQ    E
Sbjct: 123 ELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQ----E 182

Query: 182 PEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPS 241
           P +E VDC+ACGSSG+AI+GDL+LL    ++TDARY+I++EKHAIF RL EDRVFNHIP 
Sbjct: 183 PGKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPC 242

Query: 242 ILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRY 301
           + ITAKGYPDIATR+FLHR+S TFP LPI  LVDWNPAGLAILCTFK+GSIGMGLEAYRY
Sbjct: 243 VFITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRY 302

Query: 302 ACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKA 361
           ACNVKW+G+RGDD+ LIP+ESLV LKP+D QIAKSL+SS+ILQENY EEL+LMV+ G++A
Sbjct: 303 ACNVKWIGLRGDDLNLIPEESLVPLKPKDSQIAKSLLSSKILQENYIEELSLMVQTGKRA 362

Query: 362 ELEALYHNGFDYLEKYLVKKIIQFNYI 389
           E+EALY +G++YL KY+  KI+Q  YI
Sbjct: 363 EIEALYCHGYNYLGKYIATKIVQGKYI 383

[Close]
BLAST of Cp4.1LG05g03150 vs. TAIR10
Match: AT5G02820.1 (AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-43
Identity = 108/332 (32.53%), Postives = 182/332 (54.82%), Query Frame = 1 

Query: 63  SNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRE 122
           S +  NQ  + +   I L      R     ++ +      +++ +  Q+ L+   VT+R+
Sbjct: 108 SRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRD 167

Query: 123 LFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEP 182
           LFY         F  Q   +  + DV  +L C+R SL V+A+ +G+V GRL+     +  
Sbjct: 168 LFYT----DVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLI-----FSD 227

Query: 183 EQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSI 242
             + +DC   G  G AI  ++D +  +  ++DA +++++EK A + RLAEDR +N  P I
Sbjct: 228 NGDMIDCTKMGMGGKAIPPNIDRVGDM--QSDAMFILLVEKDAAYMRLAEDRFYNRFPCI 287

Query: 243 LITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYA 302
           ++TAKG PD+ATR FL ++ K    LP+  LVD +P GL IL  +  GS  M  ++    
Sbjct: 288 IVTAKGQPDVATRLFLRKM-KMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLT 347

Query: 303 C-NVKWLGMRGDDVQ--LIPQESLVSLKPRDLQIAKSLMSSEILQEN--YREELTLMVEG 362
             ++KWLG+R  D+    IP++  + +  +D++  K ++  + +++N  + EEL LMV+ 
Sbjct: 348 TPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKT 407

Query: 363 GQKAELEALYHNGFDYL-EKYLVKKIIQFNYI 389
            QKAE++AL   GF YL E YL  K+ Q +++
Sbjct: 408 KQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 427

[Close]
BLAST of Cp4.1LG05g03150 vs. TAIR10
Match: AT3G13170.1 (AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-31
Identity = 90/288 (31.25%), Postives = 157/288 (54.51%), Query Frame = 1 

Query: 103 KLMEMCSQILLQEKRVTQRELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVM 162
           +++ +  Q+L + +  ++R+++Y      P+ F  Q  V+R I D+  L +CSR++L V+
Sbjct: 81  RVLLIVQQLLQENRHASKRDIYYM----HPSAFKAQSIVDRAIGDICILFQCSRYNLNVV 140

Query: 163 ASSRGLVAGRLLLQAHCYEPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIE 222
           +   GLV G L      +       DC    ++ Y +   ++ ++ +   + A Y++V+E
Sbjct: 141 SVGNGLVMGWLK-----FREAGRKFDCLNSLNTAYPVPVLVEEVEDIV--SLAEYILVVE 200

Query: 223 KHAIFQRLAEDRVFNHIPSILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLA 282
           K  +FQRLA D        I+IT +GYPD++TR FL  + +   HLP+  LVD +P G  
Sbjct: 201 KETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKL-HLPVHCLVDCDPYGFE 260

Query: 283 ILCTFKYGSIGMG--LEAYRYACNVKWLGMRGDD--VQLIPQESLVSLKPRDLQIAKSLM 342
           IL T+++GS+ M   +E+ R A ++KWLG    D  V  +P++ L+ L   D +  ++++
Sbjct: 261 ILATYRFGSMQMAYDIESLR-APDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAML 320

Query: 343 SSEILQE---NYREELTLMVEGGQKAELEALYHNGFDYL-EKYLVKKI 383
               L+     +R EL  M++ G K E+EAL  +   +L E Y+  KI
Sbjct: 321 LRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKI 355

[Close]
BLAST of Cp4.1LG05g03150 vs. NCBI nr
Match: gi|659073945|ref|XP_008437337.1| (PREDICTED: meiotic recombination protein SPO11-2 [Cucumis melo])

HSP 1 Score: 699.5 bits (1804), Expect = 3.3e-198
Identity = 347/388 (89.43%), Postives = 372/388 (95.88%), Query Frame = 1 

Query: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDR 60
           ME  GLF+SSMRFFSDQELCYADILTPQEV+ARIQ+AVLNFLRIL+SS+PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQIAVLNFLRILNSSSPAISNLPLIDR 60

Query: 61  SSSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQ 120
            SSNSRV+QGILTD+SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQIL+Q+KRVTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKRVTQ 120

Query: 121 RELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCY 180
           RELFYKLLCDSPAYF TQLHVNRTIQDVVALL+CSR+SLG+MASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLLCDSPAYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQ---- 180

Query: 181 EPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIP 240
           EPEQE VDC ACGSSGY ISGDLDLL+ LTLKTDARY+IVIEKHAIFQRLA+DRVFNHIP
Sbjct: 181 EPEQEVVDCTACGSSGYPISGDLDLLKMLTLKTDARYIIVIEKHAIFQRLADDRVFNHIP 240

Query: 241 SILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYR 300
           SILITAKGYPD+ATRYFLH+I KTFPHLP+FGLVDWNPAGLAILCTFKYGSIGMGLEAYR
Sbjct: 241 SILITAKGYPDLATRYFLHKIGKTFPHLPMFGLVDWNPAGLAILCTFKYGSIGMGLEAYR 300

Query: 301 YACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQK 360
           YACNVKWLG+RGDD+QLIPQESLV LKPRDLQIAKSLMSS+ILQENYR+ELTLMVE GQK
Sbjct: 301 YACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSKILQENYRQELTLMVERGQK 360

Query: 361 AELEALYHNGFDYLEKYLVKKIIQFNYI 389
           AELEALYHNGFDYLEKY+VKKIIQF+YI
Sbjct: 361 AELEALYHNGFDYLEKYIVKKIIQFSYI 384

[Close]
BLAST of Cp4.1LG05g03150 vs. NCBI nr
Match: gi|449452446|ref|XP_004143970.1| (PREDICTED: meiotic recombination protein SPO11-2 [Cucumis sativus])

HSP 1 Score: 691.0 bits (1782), Expect = 1.2e-195
Identity = 344/388 (88.66%), Postives = 369/388 (95.10%), Query Frame = 1 

Query: 1   METTGLFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDR 60
           ME  GLF+SSMRFFSDQELCYADILTPQEV+ARIQVAVLNFLRIL+SS+PAISNLPLIDR
Sbjct: 1   MEPAGLFESSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILNSSSPAISNLPLIDR 60

Query: 61  SSSNSRVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQ 120
            SSNSRV+QGILTD+SWIFLSHSFCTRSLMR NA+KAFVRVWKLMEMCSQIL+Q+K+VTQ
Sbjct: 61  RSSNSRVSQGILTDDSWIFLSHSFCTRSLMRPNASKAFVRVWKLMEMCSQILIQDKKVTQ 120

Query: 121 RELFYKLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCY 180
           RELFYKLLCDSP YF TQLHVNRTIQDVVALL+CSR+SLG+MASSRGLVAGRLLLQ    
Sbjct: 121 RELFYKLLCDSPVYFSTQLHVNRTIQDVVALLQCSRYSLGIMASSRGLVAGRLLLQ---- 180

Query: 181 EPEQETVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIP 240
           EPEQE VDC ACGSSGY ISGDLDLLQ LTLKTDARY+IVIEKHAIFQRLA+DRVFN IP
Sbjct: 181 EPEQEVVDCTACGSSGYPISGDLDLLQTLTLKTDARYIIVIEKHAIFQRLADDRVFNRIP 240

Query: 241 SILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYR 300
           SILITAKGYPD+ATRYFLH+I KTF HLP+FGLVDWNPAGLAILCTFKYGSIGMGLEAYR
Sbjct: 241 SILITAKGYPDLATRYFLHKICKTFSHLPMFGLVDWNPAGLAILCTFKYGSIGMGLEAYR 300

Query: 301 YACNVKWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQK 360
           YACNVKWLG+RGDD+QLIPQESLV LKPRDLQIAKSL+SS+ILQENYR+ELTLMVE GQK
Sbjct: 301 YACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLLSSKILQENYRQELTLMVERGQK 360

Query: 361 AELEALYHNGFDYLEKYLVKKIIQFNYI 389
           AELEALYHNGFDYLEKY+VKKIIQF+YI
Sbjct: 361 AELEALYHNGFDYLEKYIVKKIIQFSYI 384

[Close]
BLAST of Cp4.1LG05g03150 vs. NCBI nr
Match: gi|823156029|ref|XP_012477947.1| (PREDICTED: meiotic recombination protein SPO11-2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 607.4 bits (1565), Expect = 1.7e-170
Identity = 297/383 (77.55%), Postives = 342/383 (89.30%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L KSSM+FFSDQ+LC+ADIL P EV ARIQVAVLNFL+ILSS  PAIS+LPLI+R SSNS
Sbjct: 4   LSKSSMKFFSDQQLCFADILLPHEVQARIQVAVLNFLKILSSPDPAISDLPLINRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV++GILTD SWIFLSHSFC+RSLM+ANA KAF+RVWK+MEMC + L QEKRVTQRELFY
Sbjct: 64  RVSEGILTDVSWIFLSHSFCSRSLMKANATKAFIRVWKVMEMCFEFLTQEKRVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLCDSP YF +QL VNRTIQDVVALLRCSR+SLG+MASS+GLVAGR+LLQ    EP QE
Sbjct: 124 KLLCDSPHYFSSQLQVNRTIQDVVALLRCSRYSLGIMASSKGLVAGRILLQ----EPNQE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            VDC+ACGSSGYAISGDL+LL+ L +KTDARY++V+EKHAIFQRLAED VFN IPSIL+T
Sbjct: 184 AVDCSACGSSGYAISGDLNLLESLIMKTDARYIVVVEKHAIFQRLAEDHVFNQIPSILLT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHR+S+ FP LPI  LVDWNPAGLAIL T+K+GSIGMGLEAYRYACNV
Sbjct: 244 AKGYPDIATRFLLHRVSRAFPDLPILALVDWNPAGLAILSTYKFGSIGMGLEAYRYACNV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+RGDD+QLIPQ+SL  LKPRDLQIA+SL+SS  LQ+NYR+EL +M++ GQ+AE+EA
Sbjct: 304 KWLGLRGDDLQLIPQQSLAPLKPRDLQIARSLISSTTLQDNYRQELAVMMQSGQRAEIEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           LY NG+DYL KYL KKI+Q NYI
Sbjct: 364 LYFNGYDYLGKYLAKKIVQANYI 382

[Close]
BLAST of Cp4.1LG05g03150 vs. NCBI nr
Match: gi|567893956|ref|XP_006439466.1| (hypothetical protein CICLE_v10024616mg [Citrus clementina])

HSP 1 Score: 603.6 bits (1555), Expect = 2.4e-169
Identity = 296/383 (77.28%), Postives = 343/383 (89.56%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L KSS+ FF+DQ+LC ADIL+P EV ARI+V+V+NFL+IL+S  PAIS+LPLI+R SSNS
Sbjct: 4   LSKSSLNFFADQQLCSADILSPLEVRARIEVSVINFLKILNSPDPAISDLPLINRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV+QG+LTD SWIFLSHSFCTRSL ++NAAKAFVRVWK+ME C QIL QEKRVTQRELFY
Sbjct: 64  RVSQGLLTDVSWIFLSHSFCTRSLTKSNAAKAFVRVWKVMETCFQILSQEKRVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLCDSP YF +QL VNRTIQDV+ALL CSRFSLG++ASSRGLVAGRL+LQ    EP QE
Sbjct: 124 KLLCDSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSRGLVAGRLMLQ----EPNQE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            +DC+ACGSSGY+ISGDL LL+KL LKTDARY+IV+EKHAIFQRL ED VFN IPSILIT
Sbjct: 184 VIDCSACGSSGYSISGDLSLLEKLDLKTDARYIIVVEKHAIFQRLTEDFVFNQIPSILIT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHR+++ FP LPI  LVDWNPAGLAILCTFK+GSIGMG+EAYRYACNV
Sbjct: 244 AKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGMEAYRYACNV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+RGDDVQLIP++SL+ LKPRDLQIA+SLMSSEILQENY+EEL+LMV  GQ+AE+EA
Sbjct: 304 KWLGLRGDDVQLIPEQSLLPLKPRDLQIARSLMSSEILQENYKEELSLMVHNGQRAEVEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           LY +G+DYL KY+ KKI+Q +YI
Sbjct: 364 LYFHGYDYLGKYIAKKIVQADYI 382

[Close]
BLAST of Cp4.1LG05g03150 vs. NCBI nr
Match: gi|568845257|ref|XP_006476493.1| (PREDICTED: meiotic recombination protein SPO11-2 isoform X2 [Citrus sinensis])

HSP 1 Score: 602.1 bits (1551), Expect = 7.1e-169
Identity = 295/383 (77.02%), Postives = 343/383 (89.56%), Query Frame = 1 

Query: 6   LFKSSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRSSSNS 65
           L KSS+ FF+DQ+LC ADIL+P EV ARI+V+V+NFL+IL+S  PAIS+LPLI+R SSNS
Sbjct: 4   LSKSSLNFFADQQLCSADILSPIEVRARIEVSVINFLKILNSPDPAISDLPLINRKSSNS 63

Query: 66  RVNQGILTDESWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFY 125
           RV+QG+LTD SWIFLSHSFCTRSL ++NAAKAFVRVWK+ME C QIL QEKRVTQRELFY
Sbjct: 64  RVSQGLLTDVSWIFLSHSFCTRSLTKSNAAKAFVRVWKVMETCFQILSQEKRVTQRELFY 123

Query: 126 KLLCDSPAYFPTQLHVNRTIQDVVALLRCSRFSLGVMASSRGLVAGRLLLQAHCYEPEQE 185
           KLLCDSP YF +QL VNRTIQDV+ALL CSRFSLG++ASSRGLVAGRL+LQ    EP +E
Sbjct: 124 KLLCDSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSRGLVAGRLMLQ----EPNEE 183

Query: 186 TVDCAACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDRVFNHIPSILIT 245
            +DC+ACGSSGY+ISGDL LL+KL LKTDARY+IV+EKHAIFQRL ED VFN IPSILIT
Sbjct: 184 VIDCSACGSSGYSISGDLSLLEKLDLKTDARYIIVVEKHAIFQRLTEDFVFNQIPSILIT 243

Query: 246 AKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNV 305
           AKGYPDIATR+ LHR+++ FP LPI  LVDWNPAGLAILCTFK+GSIGMG+EAYRYACNV
Sbjct: 244 AKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGMEAYRYACNV 303

Query: 306 KWLGMRGDDVQLIPQESLVSLKPRDLQIAKSLMSSEILQENYREELTLMVEGGQKAELEA 365
           KWLG+RGDDVQLIP++SL+ LKPRDLQIA+SLMSSEILQENY+EEL+LMV  GQ+AE+EA
Sbjct: 304 KWLGLRGDDVQLIPEQSLLPLKPRDLQIARSLMSSEILQENYKEELSLMVHNGQRAEVEA 363

Query: 366 LYHNGFDYLEKYLVKKIIQFNYI 389
           LY +G+DYL KY+ KKI+Q +YI
Sbjct: 364 LYFHGYDYLGKYIAKKIVQADYI 382

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g03150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPO12_ARATH2.1e-15772.09Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV... [more]
SPO12_ORYSI3.2e-13763.33Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. indica GN=SPO11-2 P... [more]
SPO12_ORYSJ7.2e-13763.08Meiotic recombination protein SPO11-2 OS=Oryza sativa subsp. japonica GN=SPO11-2... [more]
TOP6A_ARATH6.7e-4232.53DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1[more]
TOP6A_ORYSJ1.9e-4133.43Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica GN=SPO11-3 PE=2 SV=2[more]
BLAST of Cp4.1LG05g03150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNU2_CUCSA8.1e-19688.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152220 PE=4 SV=1[more]
A0A0D2PBJ6_GOSRA1.2e-17077.55Uncharacterized protein OS=Gossypium raimondii GN=B456_004G137600 PE=4 SV=1[more]
V4TS49_9ROSI1.7e-16977.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024616mg PE=4 SV=1[more]
A0A061G5K0_THECC2.5e-16876.24Sporulation 11-2 OS=Theobroma cacao GN=TCM_016342 PE=4 SV=1[more]
A0A067KSH0_JATCU2.1e-16777.28Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11275 PE=4 SV=1[more]
BLAST of Cp4.1LG05g03150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G63990.11.2e-15872.09 sporulation 11-2[more]
AT5G02820.13.8e-4332.53 Spo11/DNA topoisomerase VI, subunit A protein[more]
AT3G13170.14.3e-3131.25 Spo11/DNA topoisomerase VI, subunit A protein[more]
BLAST of Cp4.1LG05g03150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073945|ref|XP_008437337.1|3.3e-19889.43PREDICTED: meiotic recombination protein SPO11-2 [Cucumis melo][more]
gi|449452446|ref|XP_004143970.1|1.2e-19588.66PREDICTED: meiotic recombination protein SPO11-2 [Cucumis sativus][more]
gi|823156029|ref|XP_012477947.1|1.7e-17077.55PREDICTED: meiotic recombination protein SPO11-2 isoform X1 [Gossypium raimondii... [more]
gi|567893956|ref|XP_006439466.1|2.4e-16977.28hypothetical protein CICLE_v10024616mg [Citrus clementina][more]
gi|568845257|ref|XP_006476493.1|7.1e-16977.02PREDICTED: meiotic recombination protein SPO11-2 isoform X2 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0000737DNA catabolic process, endonucleolytic
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003824catalytic activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
Vocabulary: INTERPRO
TermDefinition
IPR013049Spo11/TopoVI_A_N
IPR011991Winged helix-turn-helix DNA-binding domain
IPR002815Spo11/TopoVI_A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051026 chiasma assembly
biological_process GO:0006302 double-strand break repair
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0043247 telomere maintenance in response to DNA damage
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0010332 response to gamma radiation
biological_process GO:0032204 regulation of telomere maintenance
biological_process GO:0032504 multicellular organism reproduction
biological_process GO:0006312 mitotic recombination
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0006265 DNA topological change
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0071555 cell wall organization
biological_process GO:0007155 cell adhesion
biological_process GO:0045010 actin nucleation
biological_process GO:0048316 seed development
biological_process GO:0009555 pollen development
biological_process GO:0009553 embryo sac development
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0005694 chromosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03150.1Cp4.1LG05g03150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002815Spo11/DNA topoisomerase VI subunit APRINTSPR01550TOP6AFAMILYcoord: 138..155
score: 8.0E-29coord: 242..263
score: 8.0E-29coord: 275..291
score: 8.0E-29coord: 156..171
score: 8.0E-29coord: 218..235
score: 8.0
IPR002815Spo11/DNA topoisomerase VI subunit APANTHERPTHR10848MEIOTIC RECOMBINATION PROTEIN SPO11coord: 11..388
score: 7.9E
IPR002815Spo11/DNA topoisomerase VI subunit AunknownSSF56726DNA topoisomerase IV, alpha subunitcoord: 95..388
score: 3.14
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 93..164
score: 2.1
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminalPFAMPF04406TP6A_Ncoord: 96..161
score: 1.4
NoneNo IPR availableGENE3DG3DSA:3.40.1360.10coord: 165..387
score: 5.3
NoneNo IPR availablePANTHERPTHR10848:SF1MEIOTIC RECOMBINATION PROTEIN SPO11-2coord: 11..388
score: 7.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g03150CmaCh02G014240Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g03150CmoCh02G014580Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g03150Cla011412Watermelon (97103) v1cpewmB717
Cp4.1LG05g03150ClCG01G002330Watermelon (Charleston Gray)cpewcgB639
Cp4.1LG05g03150Bhi12G000292Wax gourdcpewgoB0910
Cp4.1LG05g03150Carg02555Silver-seed gourdcarcpeB1282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g03150Cucumber (Chinese Long) v3cpecucB0915
Cp4.1LG05g03150Wax gourdcpewgoB0961
Cp4.1LG05g03150Cucurbita pepo (Zucchini)cpecpeB226
Cp4.1LG05g03150Cucumber (Gy14) v1cgycpeB0792
Cp4.1LG05g03150Cucurbita maxima (Rimu)cmacpeB329
Cp4.1LG05g03150Cucurbita moschata (Rifu)cmocpeB292
Cp4.1LG05g03150Wild cucumber (PI 183967)cpecpiB738
Cp4.1LG05g03150Cucumber (Chinese Long) v2cpecuB736
Cp4.1LG05g03150Bottle gourd (USVL1VR-Ls)cpelsiB582
Cp4.1LG05g03150Watermelon (Charleston Gray)cpewcgB680
Cp4.1LG05g03150Melon (DHL92) v3.5.1cpemeB647
Cp4.1LG05g03150Cucumber (Gy14) v2cgybcpeB691
Cp4.1LG05g03150Melon (DHL92) v3.6.1cpemedB774
Cp4.1LG05g03150Silver-seed gourdcarcpeB1298