Cp4.1LG05g02890 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g02890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Superoxide dismutase [Cu-Zn]
Location	Cp4.1LG05 : 2231666 .. 2235398 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATGCATCAGATAAAAGCTTTTGCTGCAAAGTGGCACACATCTACTAGAAGCCTCCATTTTTCGTTATCCCTTCTCCATCGACAGTTCCCCATAGCAAATGCAAGCAGTTCTCGCAGCCATGGCGGCGCAATCCCTCATCTCTGCCTCCCCTTCCACCTACATCCAAGTGTCCCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACAAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTTGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCTGTACACACTCTATCAATAGCTCTTTTGCCTCATCGTATCGTAGTGGGTTTCTCGTAGTTTAGGATTGAGGGTTCGAATCGATATTTGGTATTTGATTTATGGGGGATTGAATTAAATGGCTGGGGTAATTGGAGTTGCCGTGGGGATTTTGAGGTTTATTTGGCGCCTAATTTCGAAGATTGACGTTGACTTTATTTGGAATGTGATTGAGCTTAGTGGAGTTTTTTTAATTTCTGCCTGCGTTGCTTTCTTCTTGACTGTTCTGTTATTTTTTGTCATAATGTATTAGTATGCGCGTAAGTTGACTTTTAAAAATAAACGAATATGATTGTTTTGATTTTATGATGTTTACTTCTCGTAGGATTCTGTTGTCTTGTTGGCCTGTACACTATGATTATTCTAGAACCAAAAAGCTTTTGAGGGCACATCCCCTTCAGAAAATTTCAACTATTAAGGCAATAATACTGTTAGGATTATTGAGAGGAGTAGTCCCAAGTTGAGTAATTAAGAGAAAGATCATTGGTTTATAAGTAAGGAACACTATCTTCATTGAGTGAAGCCTTTTAGGGAAACTAAAAGCAAAACCATGAGAGCTTATGTGCAAAGTGGACAATATCATAGCATTGTGGAGGTTCGTGGTTTCTAACAATGACAACAATGACAACAATGACGATTAGAATGAAAATGATAATAGTAATAGTAGTTGCAATATTGTGATTCTGAAAAATGTTGTATTGTTTCTAGGTCCAACAACAGTAAATGTTCGTATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTGTAAGTAATTTGGCATTGACTGACATGATCTATGGGCTTGTTGTTTTAATCAATCTACCTTCTTGTTTCCTTCTGTAGCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGTAGTGTATGATCCATTGTCCATATTTGATTTTGATCCTTCTGTACCAAGAAGTTTTATTCTATCTAGCGAGGTTGTATTTTTGTCTCTCTTCAATTGTTTATGTATGATTTTCAATTATAGGACCACATTTCAATCCTAATAAGTTAACTCATGGAGCTCCTGAGGACGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGTATCTGCTTCTTCTTTCTGAAAGGTTCTTTTATTTTATGTTTCATGGATTTGTAACTTCTAATGCACCAATATATTGTTTCTTGATATACAGGAGTAGCGGAGGCAACCATTGTAGATAATCAGGTACCTCTATTCGATCCGTATCTGTCATCATCACAATCCATATGCTCAGAATTATTGCTGTCTTTCATCATGAATGGCATCGCAATAACTATAAATGTTGATGGTGGCAATGCCGCTGATAAAACTTCTTATATATATTGTACATGCATGTATTCATGACTGCAATTACCTTAGTATTGACAAGTTCAAAGGAAAAATTATGTTCAAGCCTTTATTTTAGATCTGCCCCTCTAACATACTCAGTTATTAATTCCTGATCTGTAGATTCCTCTCAGTGGCCCCAACTCCGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGCGGATGATCTTGGAAAAGGTATGTTCTGTTCGTCGTTTCCATTTAGTTACATTTTTCACCTCCTTTTCGTTCCTTTTCATTTGATTAACCTACTCTAGCGATTTATCAAACAAACTAAAAGAATTGAAAATAAGTTAATTTATGTTCTTGTTATCTTAGCTTCAGTTGTGTTTAATAGAATAAAATGTAGTGCTATTAATTAAATTATGAGAAAAAAATATTTTAGTTCCCTTTTATAGATAGAACTGCAATATAGCTGCTGATAGCGATGTCTGCACCACTTACCCTCGGATTTTTTTTGCTTGACTATCAAAATTCAATATTTGTTCTCATTTCTTCTGGTTATGATTATGTAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTATGCAAACATAAACTTCTTTTTTCTTCTCTCTCAAGAGTCCCGTGTTCTTTTTTCCCCATGCATGCCATGGCATATATCTTTATAAGACTGCTTTGGTGATCAATTTGTTCGATTTAAATAGAATATATAAGTTATAAACATGGGTGAACTATTCGACTATTTAAATTCTTTCTTATATCTGGTGGGTTTCATTTCCTTTAATACTTTCCAGCGGATTTCATCCCTATCTCATATCATCCCAAAGAACAAGAATTTCAGATTTCAAACAATGTTCCATTTCCTCCTCCTCCTTCCCAATTTCATTAGTTAATATTGCAGAAAGAACAAAGTTATTACTTGTTCAAAAAGAACTAACTTGTTACTGGTGACTTGGTGGATGTTGAAGGCCTACGGTATACATTACTGAACTGATCTACCTTATTGAATACTGACTGACCTCTGGCTCTACGATGCAAGGAGATTCATAGCTTTATTTCAAATTCTCAGTCCTTATAATCATTTTGCTGTTGTGTATGCCTCATGCCCTGTGTGCTCTTTAATATGCAAGGAAGCTGAGTGAATACAGTATGCTTTAATTCAAATTCTCAGCTATGCATAGAGACCATGTGGTTTTCTTGTATATTTTATGAATTGCACGGCTTATTTCATTTATCAGACCCTTTGTGTAGGTAGATATGTGGTCTAAAAGTCTCTGCGCTGGCTATTGTTCTGATAGCCTGGCATGACATTTTTCCACCTTGTAGAAGTACTTTCAATAGAATCTAGTAACTTAGAAATGGGTTAATCAAGTTAAAATACTTCTGCTGAATGCATCAACATAGTTAACGTATAACTGTTCTAAACGCTTACATTAGCAGCTAATCAAACTGTCAACCTATTGCTTTGCTTGAGTGCCATGGTAGTAAACCACTGGCAATAGTAAAATCCAGACATTCCCTATTTGCTTCTAGATGCCTAAATATTGTCTTCTCAATGGTTTTTCATCCAGAATATGTGCTAACTGCTGATACAAGAGAATCTCAATCTTTTTTCTACCTATTTCTCGTCTTTGCAGGTGTCGTCGGGCTGACTCCCGTGTAATGGCAACATACGAACTGCTAGCCTACAAGGTCATGAGCTATACGGGCACTGTTGGCAGCTTGTTGTCACCCGCTTCTCCACAGGCATGAGTTTCTTTTCTCTTGCCTAGCACATATATTGCCTTGGGAAGACGGTTCAATTGTTTTCACGTTGATATCTGTTTTACTGTGGCTTCCATTAGTTGAATAAAATTGACTTGCTACTTCTGAGATATAATGATCTTCCTTTCACCTTGGCTGGATATCCCACCTCACTGCTTCTCTCCTCC

mRNA sequence

CGATGCATCAGATAAAAGCTTTTGCTGCAAAGTGGCACACATCTACTAGAAGCCTCCATTTTTCGTTATCCCTTCTCCATCGACAGTTCCCCATAGCAAATGCAAGCAGTTCTCGCAGCCATGGCGGCGCAATCCCTCATCTCTGCCTCCCCTTCCACCTACATCCAAGTGTCCCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACAAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTTGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCCAACAACAGTAAATGTTCGTATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGACCACATTTCAATCCTAATAAGTTAACTCATGGAGCTCCTGAGGACGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGAGTAGCGGAGGCAACCATTGTAGATAATCAGATTCCTCTCAGTGGCCCCAACTCCGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGCGGATGATCTTGGAAAAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTGTCGTCGGGCTGACTCCCGTGTAATGGCAACATACGAACTGCTAGCCTACAAGGTCATGAGCTATACGGGCACTGTTGGCAGCTTGTTGTCACCCGCTTCTCCACAGGCATGAGTTTCTTTTCTCTTGCCTAGCACATATATTGCCTTGGGAAGACGGTTCAATTGTTTTCACGTTGATATCTGTTTTACTGTGGCTTCCATTAGTTGAATAAAATTGACTTGCTACTTCTGAGATATAATGATCTTCCTTTCACCTTGGCTGGATATCCCACCTCACTGCTTCTCTCCTCC

Coding sequence (CDS)

ATGCAAGCAGTTCTCGCAGCCATGGCGGCGCAATCCCTCATCTCTGCCTCCCCTTCCACCTACATCCAAGTGTCCCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACAAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTTGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCCAACAACAGTAAATGTTCGTATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGACCACATTTCAATCCTAATAAGTTAACTCATGGAGCTCCTGAGGACGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGAGTAGCGGAGGCAACCATTGTAGATAATCAGATTCCTCTCAGTGGCCCCAACTCCGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGCGGATGATCTTGGAAAAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTGTCGTCGGGCTGACTCCCGTGTAA

Protein sequence

MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV

Homology

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BLAST of Cp4.1LG05g02890 vs. Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 314.7 bits (805), Expect = 8.1e-85
Identity = 169/223 (75.78%), Postives = 188/223 (84.30%), Query Frame = 1


Query: 8   MAAQSLISASPS--TYIQVSPFSISSPPPSLISS-----FHGASLKLP--RHSLSLAASV 67
           MAA ++++++PS  T+  +SPFS S+P  +L SS     F+G S KL     SLSL+ S 
Sbjct: 1   MAAHTILASAPSHTTFSLISPFS-STPTNALSSSLQSSSFNGLSFKLSPTTQSLSLSTSA 60

Query: 68  APKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYG 127
           A KP  +VAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRI+GL  G HGFHLHE+G
Sbjct: 61  ASKPLTIVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFG 120

Query: 128 DTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 187
           DTTNGC+STGPHFNP+K THGAPEDE+RHAGDLGNIVA  DGVAEATIVDNQIPL+GPNS
Sbjct: 121 DTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNS 180

Query: 188 VVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVGRA VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 VVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLTPV 222

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BLAST of Cp4.1LG05g02890 vs. Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 8.9e-84
Identity = 163/219 (74.43%), Postives = 183/219 (83.56%), Query Frame = 1


Query: 8   MAAQSLISASPSTYIQVSPFSISSP--PPSLISSFHGASLKLPR---HSLSLAASVAPKP 67
           MAA ++ + + +T   + P + S+    PSL SSFHG SLK+      SL+L++  +PKP
Sbjct: 1   MAAHTIFTTTSTTNSFLFPIASSNTNSAPSLSSSFHGVSLKVKSKTPQSLTLSSVTSPKP 60

Query: 68  FVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTN 127
           F+V AATKKAVAVLKGTSNVEGVVTLTQ+DDGPTTV VRITGL  GLHGFHLHE+GDTTN
Sbjct: 61  FIVFAATKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTN 120

Query: 128 GCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGR 187
           GC+STGPHFNPN LTHGAP DE+RHAGDLGNI A A GVAEAT+VDNQIPLSGPNSVVGR
Sbjct: 121 GCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGR 180

Query: 188 AFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           A VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 ALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 219

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BLAST of Cp4.1LG05g02890 vs. Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 8.9e-84
Identity = 160/214 (74.77%), Postives = 178/214 (83.18%), Query Frame = 1


Query: 8   MAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVA 67
           MA  +L+S +PS      P    +P P L S FHG SLKL R S+ LA   APKP  VVA
Sbjct: 1   MAVNTLLSTAPSRVFLSFPNPSPNPSPQLHSQFHGLSLKLTRQSIPLAT--APKPLSVVA 60

Query: 68  ATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCIST 127
            TKKAVAVLKGTS+VEGVVTL+QEDDGPTTV+VRITGLT G HGFHLHE+GDTTNGC+ST
Sbjct: 61  VTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMST 120

Query: 128 GPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVH 187
           G HFNPN +THGAPED++RHAGDLGNI+A A+GVAEATIVD QIPLSGPN+V+GRA VVH
Sbjct: 121 GAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVH 180

Query: 188 ELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           EL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 ELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 212

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BLAST of Cp4.1LG05g02890 vs. Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-83
Identity = 169/221 (76.47%), Postives = 187/221 (84.62%), Query Frame = 1


Query: 8   MAAQSLISASPSTYIQVSPFSISSPPPSLI---SSFHGASLK--LPRHSLSL--AASVAP 67
           MAA  ++ +SP+    +  F IS+P  ++    SSFHG SLK  + R SL+L  AAS AP
Sbjct: 1   MAAHCILFSSPAATTSLI-FPISNPNTAVSLPSSSFHGVSLKSTINRQSLTLSAAASAAP 60

Query: 68  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 127
           KP  V AATKKAVAVLKGTS+VEGVVTLTQE+DGPTTVNV+ITGLT G HGFHLHE+GDT
Sbjct: 61  KPLTVFAATKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDT 120

Query: 128 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 187
           TNGCISTGPHFNPN  THGAPEDE RHAGDLGNI+A ADGVAEATIVDNQIPL+GPN+VV
Sbjct: 121 TNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVV 180

Query: 188 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           GRAFVVHELADDLGKGGHELS +TGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLTPV 220

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BLAST of Cp4.1LG05g02890 vs. Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.4e-83
Identity = 163/217 (75.12%), Postives = 178/217 (82.03%), Query Frame = 1


Query: 8   MAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPR---HSLSLAASVAPKPFV 67
           MAA S+ + + +T   + P S SS  P++ SSF G SL +      SL+L A   PKP  
Sbjct: 1   MAAHSIFTTTSTTNSFLYPISSSSSSPNINSSFLGVSLNVNAKFGQSLTLYAVTTPKPLT 60

Query: 68  VVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGC 127
           V AATKKAVAVLKG SNVEGVVTL+Q+DDGPTTVNVRITGL  GLHGFHLHEYGDTTNGC
Sbjct: 61  VFAATKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGC 120

Query: 128 ISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAF 187
           +STG HFNPNKLTHGAP DEIRHAGDLGNIVA ADGVAE T+VDNQIPL+GPNSVVGRA 
Sbjct: 121 MSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRAL 180

Query: 188 VVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 217

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BLAST of Cp4.1LG05g02890 vs. TrEMBL
Match: A0A0A0KEQ1_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_6G148290 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.7e-97
Identity = 194/223 (87.00%), Postives = 200/223 (89.69%), Query Frame = 1


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSL--ISSFHGASLKLPRHSLSLAASV 60
           MQAVLAAMAAQSL+S S S Y+ + PFS SS   SL   SSFHGASLKLPRHSLSLAASV
Sbjct: 1   MQAVLAAMAAQSLLSVSLSNYVALPPFSNSSSSSSLSLTSSFHGASLKLPRHSLSLAASV 60

Query: 61  APKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYG 120
           APKP  +VAATKKAVAVLKGTS VEGVVTLTQEDDGPT+VNVRITGLT GLHGFHLHE+G
Sbjct: 61  APKPLAIVAATKKAVAVLKGTSAVEGVVTLTQEDDGPTSVNVRITGLTPGLHGFHLHEFG 120

Query: 121 DTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 180
           DTTNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNI A ADGVAEA IVDNQIPLSGP S
Sbjct: 121 DTTNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNITANADGVAEAIIVDNQIPLSGPYS 180

Query: 181 VVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVGRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 VVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 223

[Close]

BLAST of Cp4.1LG05g02890 vs. TrEMBL
Match: A0A0D2Q761_GOSRA (Superoxide dismutase [Cu-Zn] OS=Gossypium raimondii GN=B456_006G104900 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 169/213 (79.34%), Postives = 182/213 (85.45%), Query Frame = 1


Query: 10  AQSLISASPSTYIQVSPFSIS-SPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAA 69
           A  + + +PS      P S + S PP L+SSF G SLKLPR SLSLAA++  KPF V A 
Sbjct: 2   AAHIFTTTPSHLALSFPSSTNPSNPPVLLSSFRGVSLKLPRQSLSLAATIPKKPFSVFAV 61

Query: 70  TKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTG 129
           TKKAVAVLKG S VEGVVTLTQE+DGPTTVNVRITGLT G HGFHLHEYGDTTNGC+STG
Sbjct: 62  TKKAVAVLKGNSEVEGVVTLTQENDGPTTVNVRITGLTPGPHGFHLHEYGDTTNGCMSTG 121

Query: 130 PHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHE 189
           PHFNPN +THGAPEDE+RHAGDLGNI+A ADGVAEATIVDNQIPLSGPN+VVGRAFVVHE
Sbjct: 122 PHFNPNNMTHGAPEDEVRHAGDLGNIIANADGVAEATIVDNQIPLSGPNAVVGRAFVVHE 181

Query: 190 LADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           L DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 182 LEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 214

[Close]

BLAST of Cp4.1LG05g02890 vs. TrEMBL
Match: Q3SAX0_GOSHI (Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.9e-86
Identity = 172/218 (78.90%), Postives = 186/218 (85.32%), Query Frame = 1


Query: 5   LAAMAAQSLISASPSTYIQVSPFSIS-SPPPSLISSFHGASLKLPRHSLSLAASVAPKPF 64
           +AAMAA  + + +PS      P S + S PP L+SSF G SLKLPR SLSLAA++  KPF
Sbjct: 37  IAAMAAH-IFTTTPSHLALSFPSSTNPSNPPVLLSSFRGVSLKLPRQSLSLAATIPKKPF 96

Query: 65  VVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNG 124
            V A TKKAVAVLKG S VEGVVTLTQE+DGPTTVNVRITGLT G HGFHLHEYGDTTNG
Sbjct: 97  SVFAVTKKAVAVLKGNSEVEGVVTLTQENDGPTTVNVRITGLTPGPHGFHLHEYGDTTNG 156

Query: 125 CISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRA 184
           C+STG HFNPN +THGAPEDE+RHAGDLGNI+A ADGVAEATIVDNQIPLSGPN+VVGRA
Sbjct: 157 CMSTGAHFNPNNMTHGAPEDEVRHAGDLGNIIANADGVAEATIVDNQIPLSGPNAVVGRA 216

Query: 185 FVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           FVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 217 FVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 253

[Close]

BLAST of Cp4.1LG05g02890 vs. TrEMBL
Match: A0A166U834_HEVBR (CuZnSOD chloroplastic isoform OS=Hevea brasiliensis GN=CuZnSODchl PE=2 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-85
Identity = 174/226 (76.99%), Postives = 190/226 (84.07%), Query Frame = 1


Query: 1   MQA-VLAAMAAQSLISASPSTYIQVSPFSIS--SPPPSLISSFHGASLKLPRHSL--SLA 60
           MQA  +AAMAA ++++ASPS+Y  +SP      S  P+L +SFHG SLK PR SL  SLA
Sbjct: 1   MQASAVAAMAAHAILAASPSSYPLLSPLPNPNISHHPALHTSFHGVSLKFPRQSLALSLA 60

Query: 61  ASVAPKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLH 120
           A+   KP  VVAATKKAVAVLKGTSNVEGVVTLTQE DGPTTVNVR+TGLT G HGFHLH
Sbjct: 61  AASPRKPLAVVAATKKAVAVLKGTSNVEGVVTLTQEGDGPTTVNVRVTGLTPGPHGFHLH 120

Query: 121 EYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSG 180
           EYGDTTNGCISTG HFNP  +THGAPEDE+RHAGDLGNIVA ADGVAEATI D QIPL G
Sbjct: 121 EYGDTTNGCISTGAHFNPTNMTHGAPEDEVRHAGDLGNIVANADGVAEATIADKQIPLDG 180

Query: 181 PNSVVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           PN+V+GRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTP+
Sbjct: 181 PNTVIGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 226

[Close]

BLAST of Cp4.1LG05g02890 vs. TrEMBL
Match: A0A103XHC7_CYNCS (Superoxide dismutase [Cu-Zn] OS=Cynara cardunculus var. scolymus GN=Ccrd_007250 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 170/225 (75.56%), Postives = 191/225 (84.89%), Query Frame = 1


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLI--SSFHGASLKLP--RHSLSLAA 60
           MQA +AAMA  S++ +SP+       F +S+P    I  SSFHG SLK P  R SL+L+ 
Sbjct: 1   MQAAIAAMALHSILFSSPAATSYPLLFPLSNPSTISIPSSSFHGVSLKTPITRQSLTLSV 60

Query: 61  SVAPKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHE 120
           + APKP  VVAA KKAVAVLKGTS+VEGVVTL+QED+GPTTVNV+ITGL  G HGFHLHE
Sbjct: 61  AAAPKPLTVVAAAKKAVAVLKGTSSVEGVVTLSQEDNGPTTVNVKITGLAPGPHGFHLHE 120

Query: 121 YGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGP 180
           +GDTTNGCISTGPHFNPN LTHGAPEDE+RHAGDLGNI+A ADGVAEATIVDNQIPL+GP
Sbjct: 121 FGDTTNGCISTGPHFNPNGLTHGAPEDEVRHAGDLGNIIANADGVAEATIVDNQIPLTGP 180

Query: 181 NSVVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           N+VVGRAFVVHELADDLGKGGHELS +TGNAGGRLACGVVGLTP+
Sbjct: 181 NAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLTPI 225

[Close]

BLAST of Cp4.1LG05g02890 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-79
Identity = 157/217 (72.35%), Postives = 174/217 (80.18%), Query Frame = 1


Query: 9   AAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLK---LPR-HSLSLAASVAPKPFV 68
           A  ++++ S  + + + P   SS P +L SSF G SL    L R  S+S A     K   
Sbjct: 3   ATNTILAFSSPSRLLIPP---SSNPSTLRSSFRGVSLNNNNLHRLQSVSFAVKAPSKALT 62

Query: 69  VVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGC 128
           VV+A KKAVAVLKGTS+VEGVVTLTQ+D GPTTVNVRITGLT G HGFHLHE+GDTTNGC
Sbjct: 63  VVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGC 122

Query: 129 ISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAF 188
           ISTGPHFNPN +THGAPEDE RHAGDLGNI A ADGVAE TIVDNQIPL+GPNSVVGRAF
Sbjct: 123 ISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAF 182

Query: 189 VVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVHEL DDLGKGGHELS TTGNAGGRLACGV+GLTP+
Sbjct: 183 VVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216

[Close]

BLAST of Cp4.1LG05g02890 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 204.5 bits (519), Expect = 6.6e-53
Identity = 99/148 (66.89%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 71  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPH 130
           K VAVL  +  V G +  TQE DG TTV+  ++GL  GLHGFH+H  GDTTNGC+STGPH
Sbjct: 3   KGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62

Query: 131 FNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELA 190
           FNP+  THGAPED  RHAGDLGNI    DG A  TI D QIPL+GPNS+VGRA VVH   
Sbjct: 63  FNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADP 122

Query: 191 DDLGKGGHELSSTTGNAGGRLACGVVGL 219
           DDLGKGGHELS  TGNAGGR+ACG++GL
Sbjct: 123 DDLGKGGHELSLATGNAGGRVACGIIGL 150

[Close]

BLAST of Cp4.1LG05g02890 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 71  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPH 130
           +AVA++ G +NV G +   Q+  G T V  +I+GL+ G HGFH+H +GDTTNGCISTGPH
Sbjct: 9   RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68

Query: 131 FNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELA 190
           FNP    HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  S++GRA VVH   
Sbjct: 69  FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADP 128

Query: 191 DDLGKGGHELSSTTGNAGGRLACGVVGL 219
           DDLGKGGH+LS +TGNAG R+ CG++GL
Sbjct: 129 DDLGKGGHKLSKSTGNAGSRVGCGIIGL 156

[Close]

BLAST of Cp4.1LG05g02890 vs. NCBI nr
Match: gi|659130926|ref|XP_008465422.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 374.0 bits (959), Expect = 1.8e-100
Identity = 197/221 (89.14%), Postives = 204/221 (92.31%), Query Frame = 1


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQAVLAAMAAQSL+S S S YI + PFS SS   SL SSFHGASLKLPRHSLSLAASVAP
Sbjct: 1   MQAVLAAMAAQSLLSVSLSNYIALPPFSNSSSSLSLTSSFHGASLKLPRHSLSLAASVAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KP  VVAA+KKAVAVLKGTS+VEGVVTLTQEDDGPT+VNVRITGLT G HGFHLHE+GDT
Sbjct: 61  KPLAVVAASKKAVAVLKGTSDVEGVVTLTQEDDGPTSVNVRITGLTPGPHGFHLHEFGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNI+A ADGVAEATIVDNQIPLSGPNSVV
Sbjct: 121 TNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNIIANADGVAEATIVDNQIPLSGPNSVV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           GRAFVVHELADDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELADDLGKGGHELSLTTGNAGGRLACGVVGLTPV 221

[Close]

BLAST of Cp4.1LG05g02890 vs. NCBI nr
Match: gi|449456060|ref|XP_004145768.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 363.6 bits (932), Expect = 2.4e-97
Identity = 194/223 (87.00%), Postives = 200/223 (89.69%), Query Frame = 1


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSL--ISSFHGASLKLPRHSLSLAASV 60
           MQAVLAAMAAQSL+S S S Y+ + PFS SS   SL   SSFHGASLKLPRHSLSLAASV
Sbjct: 1   MQAVLAAMAAQSLLSVSLSNYVALPPFSNSSSSSSLSLTSSFHGASLKLPRHSLSLAASV 60

Query: 61  APKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYG 120
           APKP  +VAATKKAVAVLKGTS VEGVVTLTQEDDGPT+VNVRITGLT GLHGFHLHE+G
Sbjct: 61  APKPLAIVAATKKAVAVLKGTSAVEGVVTLTQEDDGPTSVNVRITGLTPGLHGFHLHEFG 120

Query: 121 DTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 180
           DTTNGCISTG HFNPNKLTHGAPEDEIRHAGDLGNI A ADGVAEA IVDNQIPLSGP S
Sbjct: 121 DTTNGCISTGAHFNPNKLTHGAPEDEIRHAGDLGNITANADGVAEAIIVDNQIPLSGPYS 180

Query: 181 VVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           VVGRAFVVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 181 VVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 223

[Close]

BLAST of Cp4.1LG05g02890 vs. NCBI nr
Match: gi|1009114269|ref|XP_015873592.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 338.6 bits (867), Expect = 8.3e-90
Identity = 176/221 (79.64%), Postives = 191/221 (86.43%), Query Frame = 1


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQA LAAM AQ+++ +S  +Y   SP  +S+P PSL SSFHG S KLPR S SL+ + AP
Sbjct: 1   MQAALAAMVAQTIVFSSSPSYTLFSP--LSNPNPSLHSSFHGVSFKLPRQSHSLSLAAAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KP  VVAATKKAVAVL GTSNVEGVVTLTQ+D+GPTTVNVR+TGLT G HGFHLHEYGDT
Sbjct: 61  KPLAVVAATKKAVAVLAGTSNVEGVVTLTQDDNGPTTVNVRVTGLTPGPHGFHLHEYGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTG HFNPN LTHGAPEDEIRHAGDLGNIVA A+GVAEATIVD QIPL GPNS+V
Sbjct: 121 TNGCISTGAHFNPNNLTHGAPEDEIRHAGDLGNIVANANGVAEATIVDKQIPLGGPNSIV 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           GRAFVVHEL DDLGKGGHELS +TGNAGGRLACGVVGLTPV
Sbjct: 181 GRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 219

[Close]

BLAST of Cp4.1LG05g02890 vs. NCBI nr
Match: gi|470102209|ref|XP_004287550.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 335.5 bits (859), Expect = 7.1e-89
Identity = 177/221 (80.09%), Postives = 190/221 (85.97%), Query Frame = 1


Query: 1   MQAVLAAMAAQSLISASPSTYIQVSPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAP 60
           MQA LAAMAA S++    STY   + F+    PP+L SSFHG SLKLP  S SLAAS AP
Sbjct: 1   MQAALAAMAAHSVML---STYSSHTLFAQIPTPPTLHSSFHGVSLKLPVKSFSLAASAAP 60

Query: 61  KPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDT 120
           KP  VVAATKKAVAVLKGTS VEGVVTLTQEDDGPTTVNVRITGLT G HGFHLHE+GDT
Sbjct: 61  KPLAVVAATKKAVAVLKGTSAVEGVVTLTQEDDGPTTVNVRITGLTPGPHGFHLHEFGDT 120

Query: 121 TNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVV 180
           TNGCISTGPHFNPN LTHGAPEDE+RHAGDLGNI+A ADG AEATIVD+QIPL+GPN+V+
Sbjct: 121 TNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIIANADGEAEATIVDSQIPLTGPNAVI 180

Query: 181 GRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           GRA VVHEL DDLGKGGHELS +TGNAGGRLACGVVGLTPV
Sbjct: 181 GRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 218

[Close]

BLAST of Cp4.1LG05g02890 vs. NCBI nr
Match: gi|802551216|ref|XP_012064680.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 180/224 (80.36%), Postives = 191/224 (85.27%), Query Frame = 1


Query: 3   AVLAAMAAQSLISASPSTYIQVSPFS--ISSPPPSLISSFHGASLKLPRHSL--SLAASV 62
           A +AAMAA ++++ASPS++  + PF   I S    L SSFHG SLKLPR SL  SL  + 
Sbjct: 5   AAVAAMAAHTILAASPSSHPLLYPFPNPILSHSSPLHSSFHGVSLKLPRQSLPLSLTTAA 64

Query: 63  APK-PFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEY 122
           APK P  VVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVR+TGLT G HGFHLHEY
Sbjct: 65  APKKPLAVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEY 124

Query: 123 GDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPN 182
           GDTTNGCISTG HFNPN  THGAPEDEIRHAGDLGNIVA ADGVAEATIVDNQIPLSGPN
Sbjct: 125 GDTTNGCISTGAHFNPNNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPN 184

Query: 183 SVVGRAFVVHELADDLGKGGHELSSTTGNAGGRLACGVVGLTPV 222
           +VVGRA VVHEL DDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct: 185 AVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 228

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g02890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SODCP_SPIOL	8.1e-85	75.78	Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 S...	[more]
SODCP_PETHY	8.9e-84	74.43	Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=...	[more]
SODCP_VITVI	8.9e-84	74.77	Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1	[more]
SODCP_SOLCS	1.2e-83	76.47	Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra G...	[more]
SODCP_SOLLC	3.4e-83	75.12	Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 P...	[more]

BLAST of Cp4.1LG05g02890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEQ1_CUCSA	1.7e-97	87.00	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_6G148290 PE=3 SV=1	[more]
A0A0D2Q761_GOSRA	2.3e-86	79.34	Superoxide dismutase [Cu-Zn] OS=Gossypium raimondii GN=B456_006G104900 PE=3 SV=1	[more]
Q3SAX0_GOSHI	3.9e-86	78.90	Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A166U834_HEVBR	1.1e-85	76.99	CuZnSOD chloroplastic isoform OS=Hevea brasiliensis GN=CuZnSODchl PE=2 SV=1	[more]
A0A103XHC7_CYNCS	1.5e-85	75.56	Superoxide dismutase [Cu-Zn] OS=Cynara cardunculus var. scolymus GN=Ccrd_007250 ...	[more]

BLAST of Cp4.1LG05g02890 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28190.1	2.4e-79	72.35	copper/zinc superoxide dismutase 2	[more]
AT1G08830.1	6.6e-53	66.89	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	1.1e-47	59.46	copper/zinc superoxide dismutase 3	[more]

BLAST of Cp4.1LG05g02890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130926\|ref\|XP_008465422.1\|	1.8e-100	89.14	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|449456060\|ref\|XP_004145768.1\|	2.4e-97	87.00	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|1009114269\|ref\|XP_015873592.1\|	8.3e-90	79.64	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|470102209\|ref\|XP_004287550.1\|	7.1e-89	80.09	PREDICTED: superoxide dismutase [Cu-Zn]	[more]
gi\|802551216\|ref\|XP_012064680.1\|	1.7e-87	80.36	PREDICTED: superoxide dismutase [Cu-Zn]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process
GO:0071486	cellular response to high light intensity
GO:0034599	cellular response to oxidative stress

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast

Vocabulary: **INTERPRO**
Term	Definition
IPR024134	SOD_Cu/Zn_/chaperone
IPR018152	SOD_Cu/Zn_BS
IPR001424	SOD_Cu_Zn_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071486	cellular response to high light intensity
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0006801	superoxide metabolic process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g02890.1	Cp4.1LG05g02890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 191..217 score: 7.2E-46coord: 166..188 score: 7.2E-46coord: 147..156 score: 7.2E-46coord: 111..133 score: 7.2
IPR001424	Superoxide dismutase, copper/zinc binding domain	GENE3D	G3DSA:2.60.40.200		coord: 68..218 score: 1.0
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 79..216 score: 3.0
IPR001424	Superoxide dismutase, copper/zinc binding domain	unknown	SSF49329	Cu,Zn superoxide dismutase-like	coord: 71..218 score: 1.57
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 111..121 scor
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 205..216 scor
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 9..220 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g02890	Cucsa.385680	Cucumber (Gy14) v1	cgycpeB1020
Cp4.1LG05g02890	CmaCh02G013760	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g02890	CmoCh02G014100	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g02890	Cla008698	Watermelon (97103) v1	cpewmB729
Cp4.1LG05g02890	Csa6G148290	Cucumber (Chinese Long) v2	cpecuB747
Cp4.1LG05g02890	MELO3C026955	Melon (DHL92) v3.5.1	cpemeB662
Cp4.1LG05g02890	ClCG02G021620	Watermelon (Charleston Gray)	cpewcgB650
Cp4.1LG05g02890	CSPI06G11950	Wild cucumber (PI 183967)	cpecpiB749
Cp4.1LG05g02890	Lsi10G012210	Bottle gourd (USVL1VR-Ls)	cpelsiB602
Cp4.1LG05g02890	MELO3C026955.2	Melon (DHL92) v3.6.1	cpemedB790
Cp4.1LG05g02890	CsaV3_6G014400	Cucumber (Chinese Long) v3	cpecucB0926
Cp4.1LG05g02890	Bhi10G000101	Wax gourd	cpewgoB0961
Cp4.1LG05g02890	CsGy6G012030	Cucumber (Gy14) v2	cgybcpeB849
Cp4.1LG05g02890	Carg02593	Silver-seed gourd	carcpeB1282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g02890	Cucurbita pepo (Zucchini)	cpecpeB321
Cp4.1LG05g02890	Cucurbita maxima (Rimu)	cmacpeB582
Cp4.1LG05g02890	Cucurbita moschata (Rifu)	cmocpeB531
Cp4.1LG05g02890	Silver-seed gourd	carcpeB0480