Cp4.1LG05g02590 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g02590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionInositol 2-dehydrogenase
LocationCp4.1LG05 : 1450792 .. 1451120 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTGTCGCTACAGTCAAGTATGGAATCATTGGAGTGGGGATGATGGGCCGAGAACACCTCCTTAATCTCTACCATCTTCGCGATCAAGACGTTGCCGTTGTCGCCATAGCTGATCCGCACGCTTCATCACAGCGACAAGCCCTTGATTTAGCTCACTCACTTGGCTGGAAAATGGAGGTATGGAGTGTTCTTTAATCTTGGATATGACTGTCGAGAGTGTTTGATTTGATTGCTGTTCCTGTGGTCACTGCTGGAAATGGCACTGAATTTCCTTCTTAATTGCTAAATTTCAAGTTTGTTTTTAGGATTTGATCATTAATTAG

mRNA sequence

ATGGCTACTGTCGCTACAGTCAAGTATGGAATCATTGGAGTGGGGATGATGGGCCGAGAACACCTCCTTAATCTCTACCATCTTCGCGATCAAGACGTTGCCGTTGTCGCCATAGCTGATCCGCACGCTTCATCACAGCGACAAGCCCTTGATTTAGCTCACTCACTTGGCTGGAAAATGGAGGATTTGATCATTAATTAG

Coding sequence (CDS)

ATGGCTACTGTCGCTACAGTCAAGTATGGAATCATTGGAGTGGGGATGATGGGCCGAGAACACCTCCTTAATCTCTACCATCTTCGCGATCAAGACGTTGCCGTTGTCGCCATAGCTGATCCGCACGCTTCATCACAGCGACAAGCCCTTGATTTAGCTCACTCACTTGGCTGGAAAATGGAGGATTTGATCATTAATTAG

Protein sequence

MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKMEDLIIN
Homology
[Close]
BLAST of Cp4.1LG05g02590 vs. TrEMBL
Match: A0A0A0KMY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162620 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 2  ATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKME 61
          +T +T+KYGIIGVGMMGREHLLNL+HL+D+ VAVVAIADPHASSQRQALDLA S GWKME
Sbjct: 6  STHSTIKYGIIGVGMMGREHLLNLFHLQDKGVAVVAIADPHASSQRQALDLAQSFGWKME 65

[Close]
BLAST of Cp4.1LG05g02590 vs. TrEMBL
Match: K7MLM0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G143100 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKM 60
          MA    VKYGIIGVGMMGREHL+NLYHLR Q VAVVAIADPH  SQ+ ALDLAHS GW +
Sbjct: 1  MAGAIVVKYGIIGVGMMGREHLVNLYHLRTQGVAVVAIADPHLPSQQLALDLAHSFGWPL 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Cp4.1LG05g02590 vs. TrEMBL
Match: A0A0B2PQ65_GLYSO (Inositol 2-dehydrogenase OS=Glycine soja GN=glysoja_017135 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKM 60
          MA    VKYGIIGVGMMGREHL+NLYHLR Q VAVVAIADPH  SQ+ ALDLAHS GW +
Sbjct: 1  MAGAIVVKYGIIGVGMMGREHLVNLYHLRTQGVAVVAIADPHLPSQQLALDLAHSFGWPL 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Cp4.1LG05g02590 vs. TrEMBL
Match: A0A151SKP8_CAJCA (Rhizopine catabolism protein mocA OS=Cajanus cajan GN=KK1_001589 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-16
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 

Query: 5  ATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKME 62
          A VKYGIIGVGMMGREHLLNLYHLR + VAVVAIADPH  SQ+ ALDLAHS  W ++
Sbjct: 4  AIVKYGIIGVGMMGREHLLNLYHLRTEGVAVVAIADPHLPSQQLALDLAHSFSWPLK 60

[Close]
BLAST of Cp4.1LG05g02590 vs. TrEMBL
Match: W9S0H8_9ROSA (Rhizopine catabolism protein mocA OS=Morus notabilis GN=L484_024085 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 1  MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKM 60
          MA    VKYGIIGVGMMGREHL+NLYHLR Q V+VVAIADPH  SQR ALDLAHS  W +
Sbjct: 1  MAANDIVKYGIIGVGMMGREHLINLYHLRTQGVSVVAIADPHIPSQRLALDLAHSYNWPI 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Cp4.1LG05g02590 vs. TAIR10
Match: AT4G17370.1 (AT4G17370.1 Oxidoreductase family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-17
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 8  KYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKME 62
          KYGI+G+GMMGREHL+NL+HLRDQ +AVV IADPH  SQ  A++LA S GW+++
Sbjct: 11 KYGIVGIGMMGREHLINLHHLRDQGLAVVCIADPHPPSQLLAIELAQSFGWELK 64

[Close]
BLAST of Cp4.1LG05g02590 vs. NCBI nr
Match: gi|449469377|ref|XP_004152397.1| (PREDICTED: uncharacterized protein LOC101203116 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 2  ATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKME 61
          +T +T+KYGIIGVGMMGREHLLNL+HL+D+ VAVVAIADPHASSQRQALDLA S GWKME
Sbjct: 6  STHSTIKYGIIGVGMMGREHLLNLFHLQDKGVAVVAIADPHASSQRQALDLAQSFGWKME 65

[Close]
BLAST of Cp4.1LG05g02590 vs. NCBI nr
Match: gi|659073436|ref|XP_008437059.1| (PREDICTED: uncharacterized protein LOC103482599 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-20
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 5  ATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKME 62
          +T+KYGIIGVGMMGREHLLNL+HL+D+ VAVVAIADPHASSQRQALDLA S GWKME
Sbjct: 9  STIKYGIIGVGMMGREHLLNLFHLQDKGVAVVAIADPHASSQRQALDLARSFGWKME 65

[Close]
BLAST of Cp4.1LG05g02590 vs. NCBI nr
Match: gi|734341666|gb|KHN09834.1| (Inositol 2-dehydrogenase [Glycine soja])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKM 60
          MA    VKYGIIGVGMMGREHL+NLYHLR Q VAVVAIADPH  SQ+ ALDLAHS GW +
Sbjct: 1  MAGAIVVKYGIIGVGMMGREHLVNLYHLRTQGVAVVAIADPHLPSQQLALDLAHSFGWPL 60

Query: 61 E 62
          +
Sbjct: 61 K 61

[Close]
BLAST of Cp4.1LG05g02590 vs. NCBI nr
Match: gi|657955936|ref|XP_008369445.1| (PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Malus domestica])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKM 60
          MA   TVKYGI+GVGMMGREHL+NLYHLR + VAVVAIADPH  SQ+ ALDLAHS  W +
Sbjct: 4  MAASNTVKYGIVGVGMMGREHLINLYHLRSEGVAVVAIADPHLPSQKLALDLAHSFNWPI 63

Query: 61 E 62
          +
Sbjct: 64 K 64

[Close]
BLAST of Cp4.1LG05g02590 vs. NCBI nr
Match: gi|694412410|ref|XP_009334522.1| (PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like [Pyrus x bretschneideri])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 1  MATVATVKYGIIGVGMMGREHLLNLYHLRDQDVAVVAIADPHASSQRQALDLAHSLGWKM 60
          MA   TVKYGI+GVGMMGREHL+NLYHLR + VAVVAIADPH  SQ+ ALDLAHS  W +
Sbjct: 4  MAASNTVKYGIVGVGMMGREHLINLYHLRSEGVAVVAIADPHLPSQKLALDLAHSFNWPI 63

Query: 61 E 62
          +
Sbjct: 64 K 64

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g02590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g02590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMY6_CUCSA1.1e-2083.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162620 PE=4 SV=1[more]
K7MLM0_SOYBN1.5e-1775.41Uncharacterized protein OS=Glycine max GN=GLYMA_17G143100 PE=4 SV=1[more]
A0A0B2PQ65_GLYSO1.5e-1775.41Inositol 2-dehydrogenase OS=Glycine soja GN=glysoja_017135 PE=4 SV=1[more]
A0A151SKP8_CAJCA1.3e-1677.19Rhizopine catabolism protein mocA OS=Cajanus cajan GN=KK1_001589 PE=4 SV=1[more]
W9S0H8_9ROSA1.7e-1673.77Rhizopine catabolism protein mocA OS=Morus notabilis GN=L484_024085 PE=4 SV=1[more]
BLAST of Cp4.1LG05g02590 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17370.12.3e-1766.67 Oxidoreductase family protein[more]
BLAST of Cp4.1LG05g02590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469377|ref|XP_004152397.1|1.6e-2083.33PREDICTED: uncharacterized protein LOC101203116 isoform X1 [Cucumis sativus][more]
gi|659073436|ref|XP_008437059.1|3.5e-2085.96PREDICTED: uncharacterized protein LOC103482599 [Cucumis melo][more]
gi|734341666|gb|KHN09834.1|2.2e-1775.41Inositol 2-dehydrogenase [Glycine soja][more]
gi|657955936|ref|XP_008369445.1|6.3e-1772.13PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Malus domestica][more]
gi|694412410|ref|XP_009334522.1|6.3e-1772.13PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like [Pyrus x bretsch... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR000683Oxidoreductase_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006020 inositol metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0050112 inositol 2-dehydrogenase activity
molecular_function GO:0047115 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g02590.1Cp4.1LG05g02590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000683Oxidoreductase, N-terminalPFAMPF01408GFO_IDH_MocAcoord: 8..59
score: 1.
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 5..51
score: 3.
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 6..51
score: 7.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g02590Cucsa.301710Cucumber (Gy14) v1cgycpeB0794
Cp4.1LG05g02590CmaCh02G015310Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g02590CmoCh02G015760Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g02590Cla011596Watermelon (97103) v1cpewmB711
Cp4.1LG05g02590Csa5G162620Cucumber (Chinese Long) v2cpecuB732
Cp4.1LG05g02590MELO3C005521Melon (DHL92) v3.5.1cpemeB652
Cp4.1LG05g02590ClCG01G004160Watermelon (Charleston Gray)cpewcgB637
Cp4.1LG05g02590CSPI05G06920Wild cucumber (PI 183967)cpecpiB734
Cp4.1LG05g02590MELO3C005521.2Melon (DHL92) v3.6.1cpemedB780
Cp4.1LG05g02590CsaV3_5G004320Cucumber (Chinese Long) v3cpecucB0911
Cp4.1LG05g02590Bhi12G000431Wax gourdcpewgoB0911
Cp4.1LG05g02590CsGy5G004290Cucumber (Gy14) v2cgybcpeB687
Cp4.1LG05g02590Carg02455Silver-seed gourdcarcpeB1282
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g02590Cp4.1LG00g06490Cucurbita pepo (Zucchini)cpecpeB013
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g02590Wax gourdcpewgoB0921
Cp4.1LG05g02590Cucurbita pepo (Zucchini)cpecpeB226
Cp4.1LG05g02590Cucurbita pepo (Zucchini)cpecpeB224
Cp4.1LG05g02590Cucurbita pepo (Zucchini)cpecpeB508
Cp4.1LG05g02590Cucumber (Gy14) v1cgycpeB0341
Cp4.1LG05g02590Cucumber (Gy14) v1cgycpeB0686
Cp4.1LG05g02590Cucumber (Gy14) v1cgycpeB0792
Cp4.1LG05g02590Cucurbita maxima (Rimu)cmacpeB329
Cp4.1LG05g02590Cucurbita maxima (Rimu)cmacpeB332
Cp4.1LG05g02590Cucurbita moschata (Rifu)cmocpeB292
Cp4.1LG05g02590Cucurbita moschata (Rifu)cmocpeB296
Cp4.1LG05g02590Cucurbita moschata (Rifu)cmocpeB792
Cp4.1LG05g02590Wild cucumber (PI 183967)cpecpiB721
Cp4.1LG05g02590Wild cucumber (PI 183967)cpecpiB740
Cp4.1LG05g02590Cucumber (Chinese Long) v2cpecuB719
Cp4.1LG05g02590Cucumber (Chinese Long) v2cpecuB738
Cp4.1LG05g02590Bottle gourd (USVL1VR-Ls)cpelsiB580
Cp4.1LG05g02590Bottle gourd (USVL1VR-Ls)cpelsiB585
Cp4.1LG05g02590Bottle gourd (USVL1VR-Ls)cpelsiB624
Cp4.1LG05g02590Watermelon (Charleston Gray)cpewcgB641
Cp4.1LG05g02590Watermelon (Charleston Gray)cpewcgB676
Cp4.1LG05g02590Watermelon (97103) v1cpewmB703
Cp4.1LG05g02590Watermelon (97103) v1cpewmB713
Cp4.1LG05g02590Melon (DHL92) v3.5.1cpemeB647
Cp4.1LG05g02590Melon (DHL92) v3.5.1cpemeB697
Cp4.1LG05g02590Cucumber (Gy14) v2cgybcpeB427
Cp4.1LG05g02590Cucumber (Gy14) v2cgybcpeB693
Cp4.1LG05g02590Melon (DHL92) v3.6.1cpemedB774
Cp4.1LG05g02590Melon (DHL92) v3.6.1cpemedB776
Cp4.1LG05g02590Melon (DHL92) v3.6.1cpemedB831
Cp4.1LG05g02590Silver-seed gourdcarcpeB0769
Cp4.1LG05g02590Cucumber (Chinese Long) v3cpecucB0896
Cp4.1LG05g02590Cucumber (Chinese Long) v3cpecucB0917