Cp4.1LG05g01780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g01780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosome recycling factor family protein
LocationCp4.1LG05 : 82368 .. 86194 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGAAGAGAAAGTGGAGAACTGGTGCTTGTATGATAATACGTTGCTATGAAACGAACAAACAGTCCGCAGAAGGAATTATTCATTAAAAGAAAAAAAAAAATGAAAAAATTTGAAAATTTTGGTGGAAACGAGGATGGAATCAGGTGGGAGGAGGTGTCCGGAGACTTTTATCCTTTTTTATTTTTTATTTTTTACTTTTTAACCTTCCCATCTTATCTCCATCAGTTGGCGCCGCTGGCATAGTACTGTATTCCTCGCTTTCGCAATTCAATCTCTTATCCACAACTTCTCAACTTCTAACCTTTCCCCTTCATCATCTCTATCATCTTCGCTTCATTCATTTCGGTTTTCATGGCGACGCCTTTCTCCTCCACCACTTCTCTCCGTTCTGTCTTCCAACCCAAACAAATCCCCCCTCCCAAAGCCCTCCTCTCCATCCGAGGTACGTCTACCTCGCTCTTCAACCCAAATTTGCTTTCTCGTTTTTGCTTTCTTTACTGCAACGCTTCTCCTTCTAGATTATAATGCAGGCTTAAATTGCGTCAAATGCGGCTCCACTACCACGCATCTTTCTTCATGGAAATCAGCTTCAAACTACATCCGGATCAGGCGACATGCCCTAATGCTTCCTACCCAGCCCTTTCAATCAGGGAATCTGTCGAAATACAGGCAAGCCCATTTATTTTATTTCATTTTCTTTCTTACGGACCTTGCCGCCCTAGAGAAATGGTAAACATACAAGCATTTTGCATATTTGGATTGATCATTGCCTTATTGCTACCTGAAGTTGATTGTGGTGGCTTTTCAGTTGTATTGATATTCTTCTCCTCCTCTTTTTGGCTATGATTTTTTTTTAGAAGAGGAGTCATAAGGGCGGCAACTATCGAAGAAATTGAAGCGGAGAAAGCATTGATTGAGAAAGATGTAGTGAGTTCCTATGATCATTGATTTGGAGAGTTGCTGCATCTTTTAATAAAGCAATCTAAATTTAGGAAAAATTGTGCCAATAATCATCCAATTACTTTCCAGAGAGCAAGGATGGAAAAGACTATCGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACAGGGAGAGCAAACCCTGCCATGCTCGATAAGATTGAGGTATTGGCAATTCTTAAATTCGGGTCGCTTAGTGGATAGCTGCCTCAATATGTCTGCTTAGAACTTTCTTTCTTTCTTTCTTTCTTTTTTTCTCAAATTTCAAATGAGTATCATGACAATCAAAATTTTATTTGCCGCTTTCATGATTTTTCAGGTGGAGTATTACGGCAGTCCAGTTGGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGATCCAGCCATATGATAAATCCAGGTATTCCATATGTCAATTGGCTGAGTTGAATAGATTTTGGAAATCTTTTGGGATTTATTGGTCATTGGTCTGCGCCCGTTACCTTATAAAAATCAAACACTATACCGATTAAGTTCTTGCAAATCTCTGTTATGTTAGAATCAGGAAGGGGTATATGTACAACGAAAGGACAAGTTTTCTTCTATAACCATACCTTTTACCATGAACCCTTGAATATTGAGGATGTTCCTCAATCTTTTATACGTTTGAAATCTATACATGTTACTATTCTTAGCTTGCTTTTCTTAGAGGGACCTACTTAAGGCTTCAGAATTTCGTCATTGTAATTCCTGTTTTTCTGTATAAAATGTTTCGCATGGACCCATTAGATCTTCTCTAATCTTGAGTTCTTTGCGTTCATTGGTTGAGACTGCTGTGGACATAATAATCATCATATTATCATTAGCTGTAGAATGATGTTATCCAGCTTTACAGTGTAATATTTGTATAATGTCTGTGGATATCAGCATTAACTCTTAACGAGTCACCATCTTCAGCTTAAAGTCAATAGAGAAGGCCATAGTAAACTCTAACTTGGGAATGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGGAGAAAGGTATTTTCCTCAACTCACATTATTAGCAAGTGAATGTGGATGATAAGGGCAGAGCCAGAAATTTTCTTGAAGTTGCAGAAGTTTACATTCTAACTTTTTATACCTGTCATTTTTCAATTTTGAAAAGTTGGGGGTAAATAAGAGAAAAAAAATTAATCTCCACTATTTATATAATTTTTTAATCTAGATTGCCCCTCCTTCCTTATTCACCCTGCCTCTGTGGATGATATATTTGCGTACTTTACACTGCAGGAATTGTCAAAGGTTGTTGCTAAGCAGGCAGAGGAAGGGAAGGTATGGTTTCATTTTTCCTTTATGGGAAGGGGGTGGAGATGAAAATAGATTGAGATATATGTCCTGATCCAGGTTGCAATGAGTTTATTTGTCGTGACTTTTGGGATCTATGCTTAAACAGCTACTGATCATGAACTCTGAGATGACATCCTGCATCTTCCTGTTTACAGGTGGCGGTGAGGAATATAAGAAGAGATGCCTTGAAAGCCTATGACAAACTGGAAAAGGTCAGCAAAGCATACATCTTTATACCTTAATCTTATGGTGCTTTTCTTCCGCTTCTATGTTTTATTGATCTGCCTTCTAAAGAGCAAGCTCCGTTGTCTCTTGTATAGTTTTACTTCTTACTGGTTTCCTTAATGTTTTTATCTTTTGTATCAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGCGATTTGCAGGTTTGTTATTGTTTCTGTTGTTTAGAGCTTTTGATCCTAAATCAATTTTGAGATGGAATTTGAATACGTTCGCATAAAGGCCCAGATAGGAGTGGAGGATGTAATTCCTTCTGAAGGCATCAAACCTTGTTCTTGTTTGTGCTAAATTTTGGTTAAATCACAAGTTGTTGGGAAACCAGATGTATTCATTACATAAAAGATGACGAAGAACTTTCTTGTAGTTATTTAGTGTCGAATTTATATATTAGGGGATTTGTTTCTCTGGTGCCCGTATTGTGATTTGATTTCTTAATGTTTCATTTGTAATTGCATCGTATTTTGATTATCTCAAGCTAAGATGATTTCGTAGTGCAGAAACTGACAGATGACTATATGAAGAAGATTGATGTCATATACAAGCAGAAAGAGAAGGTATGATCCATCTCGACTGTTCCTTTCTCTGGGTATTAGAACTATAATCTTTAAGCACGAGCATTGGTAGGTTTTTTATTTGGGATCTCTTCATTTCACGAAGTGCTTACAAGGCACTGAACTTACTTTGTTATCATCAACAATATTTTTGCAGTGGTTGAGTGAACATGAATTTGCAAATTGTATTTCAGGAGTTGTTGAAGGTGTGAGCAGAAGAAGCAAATGGTGGAGGTGTTCCCCTGTTGATCTGTGTCAGATATGCAATTGTTGGTTTCTTTTTCTCCTGAATAGAGTTTTGATGTCATTGTTAGAATCAAACCGTTTCTTTTTCATTTGAAATGAGATTCAACGCCTCGTGGGAAGAAAGGGGAATATGCATGATGCCTCTGTTGTCAAATTGGCTCATCTCTAACTTCTCACTCTGTACATTGAAACTGACATTATGACTACAACACACTCATTTTGACTCGGCGTTCAACTGTTGAGCTTGAGTTTAATGTGCCTATTGAACATAATAATTTCTCCTCTCCTTCCATTGTTACACTCAAAAATCATTTTCTAGATATTGCAGTTTTTTAAAATGTAATGAATGTAGTGCTCAAATTAATTTAGGTGCCCTCTCTCCGCTTCTGTTGCAGTCGGTAATGTGAAGTTTTCTTTAT

mRNA sequence

GGAAGAAGAGAAAGTGGAGAACTGGTGCTTGTATGATAATACGTTGCTATGAAACGAACAAACAGTCCGCAGAAGGAATTATTCATTAAAAGAAAAAAAAAAATGAAAAAATTTGAAAATTTTGGTGGAAACGAGGATGGAATCAGGTGGGAGGAGGTGTCCGGAGACTTTTATCCTTTTTTATTTTTTATTTTTTACTTTTTAACCTTCCCATCTTATCTCCATCAGTTGGCGCCGCTGGCATAGTACTGTATTCCTCGCTTTCGCAATTCAATCTCTTATCCACAACTTCTCAACTTCTAACCTTTCCCCTTCATCATCTCTATCATCTTCGCTTCATTCATTTCGGTTTTCATGGCGACGCCTTTCTCCTCCACCACTTCTCTCCGTTCTGTCTTCCAACCCAAACAAATCCCCCCTCCCAAAGCCCTCCTCTCCATCCGAGATTATAATGCAGGCTTAAATTGCGTCAAATGCGGCTCCACTACCACGCATCTTTCTTCATGGAAATCAGCTTCAAACTACATCCGGATCAGGCGACATGCCCTAATGCTTCCTACCCAGCCCTTTCAATCAGGGAATCTGTCGAAATACAGGCAAGCCCATTTATTTTATTTCATTTTCTTTCTTACGGACCTTGCCGCCCTAGAGAAATGGAAAAATTGTGCCAATAATCATCCAATTACTTTCCAGAGAGCAAGGATGGAAAAGACTATCGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACAGGGAGAGCAAACCCTGCCATGCTCGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTGGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGATCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTAAACTCTAACTTGGGAATGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGGAGAAAGGAATTGTCAAAGGTTGTTGCTAAGCAGGCAGAGGAAGGGAAGGTGGCGGTGAGGAATATAAGAAGAGATGCCTTGAAAGCCTATGACAAACTGGAAAAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGCGATTTGCAGAAACTGACAGATGACTATATGAAGAAGATTGATGTCATATACAAGCAGAAAGAGAAGGAGTTGTTGAAGGTGTGAGCAGAAGAAGCAAATGGTGGAGGTGTTCCCCTGTTGATCTGTGTCAGATATGCAATTGTTGGTTTCTTTTTCTCCTGAATAGAGTTTTGATGTCATTGTTAGAATCAAACCGTTTCTTTTTCATTTGAAATGAGATTCAACGCCTCGTGGGAAGAAAGGGGAATATGCATGATGCCTCTGTTGTCAAATTGGCTCATCTCTAACTTCTCACTCTGTACATTGAAACTGACATTATGACTACAACACACTCATTTTGACTCGGCGTTCAACTGTTGAGCTTGAGTTTAATGTGCCTATTGAACATAATAATTTCTCCTCTCCTTCCATTGTTACACTCAAAAATCATTTTCTAGATATTGCAGTTTTTTAAAATGTAATGAATGTAGTGCTCAAATTAATTTAGGTGCCCTCTCTCCGCTTCTGTTGCAGTCGGTAATGTGAAGTTTTCTTTAT

Coding sequence (CDS)

ATGGCGACGCCTTTCTCCTCCACCACTTCTCTCCGTTCTGTCTTCCAACCCAAACAAATCCCCCCTCCCAAAGCCCTCCTCTCCATCCGAGATTATAATGCAGGCTTAAATTGCGTCAAATGCGGCTCCACTACCACGCATCTTTCTTCATGGAAATCAGCTTCAAACTACATCCGGATCAGGCGACATGCCCTAATGCTTCCTACCCAGCCCTTTCAATCAGGGAATCTGTCGAAATACAGGCAAGCCCATTTATTTTATTTCATTTTCTTTCTTACGGACCTTGCCGCCCTAGAGAAATGGAAAAATTGTGCCAATAATCATCCAATTACTTTCCAGAGAGCAAGGATGGAAAAGACTATCGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACAGGGAGAGCAAACCCTGCCATGCTCGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTGGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGATCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTAAACTCTAACTTGGGAATGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGGAGAAAGGAATTGTCAAAGGTTGTTGCTAAGCAGGCAGAGGAAGGGAAGGTGGCGGTGAGGAATATAAGAAGAGATGCCTTGAAAGCCTATGACAAACTGGAAAAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGCGATTTGCAGAAACTGACAGATGACTATATGAAGAAGATTGATGTCATATACAAGCAGAAAGAGAAGGAGTTGTTGAAGGTGTGA

Protein sequence

MATPFSSTTSLRSVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIRIRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV
Homology
[Close]
BLAST of Cp4.1LG05g01780 vs. Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-76
Identity = 159/255 (62.35%), Postives = 197/255 (77.25%), Query Frame = 1 

Query: 35  GLNCVKCGSTTTHLSSWKSASNYIRIRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTD 94
           G++ ++C    T++S W+S++NY+R+             SG     +Q       F    
Sbjct: 27  GVSDMECNIARTNVSVWRSSANYVRMDCGVKKF------SGKAVVVKQLQNRAGTFRCAT 86

Query: 95  LAALEKWKNCANNHPITFQRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVG 154
           +  +E  K+       T  + RMEKTI+T+RS+FNS+RT RA+P MLD+IEVEYYG+PV 
Sbjct: 87  MEEVEAEKSLIE----TNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVS 146

Query: 155 LKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERR 214
           LKSIAQISTPDASSLLI PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+LP LTS+RR
Sbjct: 147 LKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRR 206

Query: 215 KELSKVVAKQAEEGKVAVRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKK 274
           KEL+KVV+K AEEGKVAVRNIRRDALK+Y+KLEKEKKLSEDNVKDLS+DLQKLTD+YMKK
Sbjct: 207 KELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKK 266

Query: 275 IDVIYKQKEKELLKV 290
           ++ IYKQKE+EL+KV
Sbjct: 267 VESIYKQKEQELMKV 271

[Close]
BLAST of Cp4.1LG05g01780 vs. Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=2 SV=2)

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-75
Identity = 149/176 (84.66%), Postives = 169/176 (96.02%), Query Frame = 1 

Query: 114 RARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQP 173
           +++MEKTI+T+R+SFNSIRTGR+N AMLDKIEVEYYGSPV LKSIAQISTPD SSLL+QP
Sbjct: 100 KSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQP 159

Query: 174 YDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 233
           YDKSSLK+IEKAIVNS+LG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+R
Sbjct: 160 YDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALR 219

Query: 234 NIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           NIRRDALK+YDKLEKEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 220 NIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]
BLAST of Cp4.1LG05g01780 vs. Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-72
Identity = 139/176 (78.98%), Postives = 165/176 (93.75%), Query Frame = 1 

Query: 114 RARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQP 173
           + RMEKTI+ V++SFNSIRT R+NP MLDKI+VEYYG+P  LKSIAQISTPD+SSLL+ P
Sbjct: 52  KERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNP 111

Query: 174 YDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 233
           YDKSSLK IEKAIVNS+LG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+R
Sbjct: 112 YDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALR 171

Query: 234 NIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           NIRRDA+K+YDKLEKEKKLSEDNVKDLSSDLQK+ D+Y+KK+D I+KQKEKEL+ V
Sbjct: 172 NIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227

[Close]
BLAST of Cp4.1LG05g01780 vs. Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-71
Identity = 139/176 (78.98%), Postives = 165/176 (93.75%), Query Frame = 1 

Query: 114 RARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQP 173
           R RMEK I+TV+++FN++RTGRANPAMLD+IEVEYYG+PV LKSIAQI+TPDA+SLLIQP
Sbjct: 91  RERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQP 150

Query: 174 YDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 233
           YDKSSLK IEK IV +NLG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+R
Sbjct: 151 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIR 210

Query: 234 NIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           NIRRDA+KAYDKLEKEKKLSEDNVKDLS+DLQK+TD+YMKKI+ I KQKE+EL+K+
Sbjct: 211 NIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]
BLAST of Cp4.1LG05g01780 vs. Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-71
Identity = 139/176 (78.98%), Postives = 165/176 (93.75%), Query Frame = 1 

Query: 114 RARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQP 173
           R RMEK I+TV+++FN++RTGRANPAMLD+IEVEYYG+PV LKSIAQI+TPDA+SLLIQP
Sbjct: 91  RERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQP 150

Query: 174 YDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 233
           YDKSSLK IEK IV +NLG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+R
Sbjct: 151 YDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIR 210

Query: 234 NIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           NIRRDA+KAYDKLEKEKKLSEDNVKDLS+DLQK+TD+YMKKI+ I KQKE+EL+K+
Sbjct: 211 NIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]
BLAST of Cp4.1LG05g01780 vs. TrEMBL
Match: A0A0A0KJG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410660 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 2.3e-110
Identity = 224/290 (77.24%), Postives = 245/290 (84.48%), Query Frame = 1 

Query: 1   MATPFSSTTSLR-SVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MATPFS+T S+R S+FQ    PPPK+LLS+RDYN GLNCVKCGS T HL SWKSASNY+R
Sbjct: 1   MATPFSATASIRRSLFQN---PPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           + R AL++ TQ   SGN+ K R+      +     +  +E  K           +ARMEK
Sbjct: 61  LNRQALVISTQLSVSGNVFKNRR-----LVVRAATIEEIEAEKTLIEKDV----KARMEK 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSL
Sbjct: 121 TIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIVNS+LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 LKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]
BLAST of Cp4.1LG05g01780 vs. TrEMBL
Match: A0A061DPN2_THECC (Ribosome recycling factor isoform 1 OS=Theobroma cacao GN=TCM_004363 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.6e-92
Identity = 192/289 (66.44%), Postives = 226/289 (78.20%), Query Frame = 1 

Query: 1   MATPFSSTTSLRSVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIRI 60
           MA PFSST+++ S+F+P   PP   L     +  G +CVKC ST  ++ SW SA+NY R+
Sbjct: 1   MAAPFSSTSTVGSIFRPNPNPPKSFLSPSDSFQKGFDCVKCRSTDVNVYSWSSAANYARL 60

Query: 61  RRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEKT 120
           R  A  L  +PF    + + R       +     +  +E  K+          +ARMEKT
Sbjct: 61  RHGASKLSGKPFV---VLRKRAG-----VLRCATIEEIEAEKSSIEKDA----KARMEKT 120

Query: 121 IDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLK 180
           I+TVR++FNSIRTGRANPA+LDK+EVEYYG+PV LKSIAQISTPD+SSLL+QPYDKSSLK
Sbjct: 121 IETVRTNFNSIRTGRANPAILDKVEVEYYGTPVSLKSIAQISTPDSSSLLVQPYDKSSLK 180

Query: 181 SIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDAL 240
           +IEKAIVNS+LGMTPNNDGEVIRL+LPQLT+ERRKELSKVVAKQAEEGKVAVRNIRRDAL
Sbjct: 181 AIEKAIVNSDLGMTPNNDGEVIRLSLPQLTTERRKELSKVVAKQAEEGKVAVRNIRRDAL 240

Query: 241 KAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           KAY+KLEKEKKLSEDNVKDLSSDLQKLTD+YMKKID I+KQKEKELL V
Sbjct: 241 KAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIFKQKEKELLTV 277

[Close]
BLAST of Cp4.1LG05g01780 vs. TrEMBL
Match: A0A061DPY9_THECC (Ribosome recycling factor isoform 2 OS=Theobroma cacao GN=TCM_004363 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.4e-88
Identity = 192/312 (61.54%), Postives = 226/312 (72.44%), Query Frame = 1 

Query: 1   MATPFSSTTSLRSVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIRI 60
           MA PFSST+++ S+F+P   PP   L     +  G +CVKC ST  ++ SW SA+NY R+
Sbjct: 1   MAAPFSSTSTVGSIFRPNPNPPKSFLSPSDSFQKGFDCVKCRSTDVNVYSWSSAANYARL 60

Query: 61  RRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEKT 120
           R  A  L  +PF    + + R       +     +  +E  K+          +ARMEKT
Sbjct: 61  RHGASKLSGKPFV---VLRKRAG-----VLRCATIEEIEAEKSSIEKDA----KARMEKT 120

Query: 121 IDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLK 180
           I+TVR++FNSIRTGRANPA+LDK+EVEYYG+PV LKSIAQISTPD+SSLL+QPYDKSSLK
Sbjct: 121 IETVRTNFNSIRTGRANPAILDKVEVEYYGTPVSLKSIAQISTPDSSSLLVQPYDKSSLK 180

Query: 181 SIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDAL 240
           +IEKAIVNS+LGMTPNNDGEVIRL+LPQLT+ERRKELSKVVAKQAEEGKVAVRNIRRDAL
Sbjct: 181 AIEKAIVNSDLGMTPNNDGEVIRLSLPQLTTERRKELSKVVAKQAEEGKVAVRNIRRDAL 240

Query: 241 KAYDKLEKEKKLSEDNVKDLSSDL-----------------------QKLTDDYMKKIDV 290
           KAY+KLEKEKKLSEDNVKDLSSDL                       QKLTD+YMKKID 
Sbjct: 241 KAYEKLEKEKKLSEDNVKDLSSDLQISQLGGLQIPLSTQVCEIFSFMQKLTDEYMKKIDS 300

[Close]
BLAST of Cp4.1LG05g01780 vs. TrEMBL
Match: A0A067FZW6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023857mg PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.5e-87
Identity = 191/290 (65.86%), Postives = 221/290 (76.21%), Query Frame = 1 

Query: 1   MATPFSSTTSLRSVFQPKQIPPPKALLSIRDY-NAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MAT FSST  +RS+FQ K   PPK LL + D  +       C +++  +  W SA+NY R
Sbjct: 1   MATHFSSTGPMRSIFQLKS-NPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           +    + L  +P     L+  R       +     +  +E  K+          +ARME+
Sbjct: 61  L----VKLSNKPIVVRQLAHKRNG-----VVRCATIEEIEAEKSSIEKDV----KARMER 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TID VR++FNS+RTGR+NPAMLDKIEVEYYGSPV LKSIAQI+TPD+SSLLIQPYDKSSL
Sbjct: 121 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIV+S+LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KL+KEKKLSEDNVKDLSSDLQKLTD+YMKKID IYKQKEKELLKV
Sbjct: 241 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276

[Close]
BLAST of Cp4.1LG05g01780 vs. TrEMBL
Match: V4VVJ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021605mg PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.5e-87
Identity = 191/290 (65.86%), Postives = 221/290 (76.21%), Query Frame = 1 

Query: 1   MATPFSSTTSLRSVFQPKQIPPPKALLSIRDY-NAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MAT FSST  +RS+FQ K   PPK LL + D  +       C +++  +  W SA+NY R
Sbjct: 1   MATHFSSTGPMRSIFQLKS-NPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           +    + L  +P     L+  R       +     +  +E  K+          +ARME+
Sbjct: 61  L----VKLSNKPIVVRQLAHKRNG-----VVRCATIEEIEAEKSSIEKDV----KARMER 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TID VR++FNS+RTGR+NPAMLDKIEVEYYGSPV LKSIAQI+TPD+SSLLIQPYDKSSL
Sbjct: 121 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIV+S+LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KL+KEKKLSEDNVKDLSSDLQKLTD+YMKKID IYKQKEKELLKV
Sbjct: 241 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276

[Close]
BLAST of Cp4.1LG05g01780 vs. TAIR10
Match: AT3G63190.1 (AT3G63190.1 ribosome recycling factor, chloroplast precursor)

HSP 1 Score: 284.3 bits (726), Expect = 8.6e-77
Identity = 149/176 (84.66%), Postives = 169/176 (96.02%), Query Frame = 1 

Query: 114 RARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQP 173
           +++MEKTI+T+R+SFNSIRTGR+N AMLDKIEVEYYGSPV LKSIAQISTPD SSLL+QP
Sbjct: 100 KSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQP 159

Query: 174 YDKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 233
           YDKSSLK+IEKAIVNS+LG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+R
Sbjct: 160 YDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALR 219

Query: 234 NIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           NIRRDALK+YDKLEKEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 220 NIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]
BLAST of Cp4.1LG05g01780 vs. TAIR10
Match: AT3G01800.1 (AT3G01800.1 Ribosome recycling factor)

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 1 

Query: 115 ARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPY 174
           ++ME  ID +      +RTGRA P MLD I VE  G  + L  +A +S  D  +L + PY
Sbjct: 95  SQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPY 154

Query: 175 DKSSLKSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRN 234
           D  ++K +EKAIV S LG+ P  DG+ +  ++P LT E  + + K+V K +E   V  ++
Sbjct: 155 DPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSE---VVKQS 214

Query: 235 IRRDALKAYDKLEKE-KKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKEL 287
           IRR   KA D ++K    L +D VK L  ++ +LT  ++K  + + K KEKE+
Sbjct: 215 IRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264

[Close]
BLAST of Cp4.1LG05g01780 vs. NCBI nr
Match: gi|449444671|ref|XP_004140097.1| (PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 3.3e-110
Identity = 224/290 (77.24%), Postives = 245/290 (84.48%), Query Frame = 1 

Query: 1   MATPFSSTTSLR-SVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MATPFS+T S+R S+FQ    PPPK+LLS+RDYN GLNCVKCGS T HL SWKSASNY+R
Sbjct: 1   MATPFSATASIRRSLFQN---PPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           + R AL++ TQ   SGN+ K R+      +     +  +E  K           +ARMEK
Sbjct: 61  LNRQALVISTQLSVSGNVFKNRR-----LVVRAATIEEIEAEKTLIEKDV----KARMEK 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSL
Sbjct: 121 TIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIVNS+LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 LKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]
BLAST of Cp4.1LG05g01780 vs. NCBI nr
Match: gi|778716237|ref|XP_011657524.1| (PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 406.0 bits (1042), Expect = 5.6e-110
Identity = 224/290 (77.24%), Postives = 244/290 (84.14%), Query Frame = 1 

Query: 1   MATPFSSTTSLR-SVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MATPFS+T S+R S+FQ    PPPK+LLS+RDYN GLNCVKCGS T HL SWKSASNY+R
Sbjct: 1   MATPFSATASIRRSLFQN---PPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           + R AL++ TQ   SGN+ K R       +     +  +E  K           +ARMEK
Sbjct: 61  LNRQALVISTQLSVSGNVFKNR------LVVRAATIEEIEAEKTLIEKDV----KARMEK 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSL
Sbjct: 121 TIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIVNS+LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 LKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]
BLAST of Cp4.1LG05g01780 vs. NCBI nr
Match: gi|659097082|ref|XP_008449432.1| (PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 404.1 bits (1037), Expect = 2.1e-109
Identity = 222/290 (76.55%), Postives = 245/290 (84.48%), Query Frame = 1 

Query: 1   MATPFSSTTSLR-SVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MATPFS+TTS+R S+F     PPPK LLS+RDYN GLNCVKCGS++ HL SWKSASNY+R
Sbjct: 1   MATPFSATTSIRRSLFHN---PPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           + + AL+L TQ   SGN+ K R+      +     +  +E  K           +ARMEK
Sbjct: 61  LNQRALLLSTQLSVSGNVLKNRRG-----VVRAATIEEIEAEKTLIEKDV----KARMEK 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSL
Sbjct: 121 TIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIVNS+LG+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 LKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]
BLAST of Cp4.1LG05g01780 vs. NCBI nr
Match: gi|659097084|ref|XP_008449433.1| (PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 402.1 bits (1032), Expect = 8.0e-109
Identity = 222/290 (76.55%), Postives = 244/290 (84.14%), Query Frame = 1 

Query: 1   MATPFSSTTSLR-SVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIR 60
           MATPFS+TTS+R S+F     PPPK LLS+RDYN GLNCVKCGS++ HL SWKSASNY+R
Sbjct: 1   MATPFSATTSIRRSLFHN---PPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVR 60

Query: 61  IRRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEK 120
           + + AL+L TQ   SGN+ K R       +     +  +E  K           +ARMEK
Sbjct: 61  LNQRALLLSTQLSVSGNVLKNRG------VVRAATIEEIEAEKTLIEKDV----KARMEK 120

Query: 121 TIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSL 180
           TIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSL
Sbjct: 121 TIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 180

Query: 181 KSIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240
           KSIEKAIVNS+LG+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA
Sbjct: 181 KSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 240

Query: 241 LKAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           LKAY+KLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 LKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]
BLAST of Cp4.1LG05g01780 vs. NCBI nr
Match: gi|590717367|ref|XP_007050597.1| (Ribosome recycling factor isoform 1 [Theobroma cacao])

HSP 1 Score: 347.4 bits (890), Expect = 2.3e-92
Identity = 192/289 (66.44%), Postives = 226/289 (78.20%), Query Frame = 1 

Query: 1   MATPFSSTTSLRSVFQPKQIPPPKALLSIRDYNAGLNCVKCGSTTTHLSSWKSASNYIRI 60
           MA PFSST+++ S+F+P   PP   L     +  G +CVKC ST  ++ SW SA+NY R+
Sbjct: 1   MAAPFSSTSTVGSIFRPNPNPPKSFLSPSDSFQKGFDCVKCRSTDVNVYSWSSAANYARL 60

Query: 61  RRHALMLPTQPFQSGNLSKYRQAHLFYFIFFLTDLAALEKWKNCANNHPITFQRARMEKT 120
           R  A  L  +PF    + + R       +     +  +E  K+          +ARMEKT
Sbjct: 61  RHGASKLSGKPFV---VLRKRAG-----VLRCATIEEIEAEKSSIEKDA----KARMEKT 120

Query: 121 IDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLK 180
           I+TVR++FNSIRTGRANPA+LDK+EVEYYG+PV LKSIAQISTPD+SSLL+QPYDKSSLK
Sbjct: 121 IETVRTNFNSIRTGRANPAILDKVEVEYYGTPVSLKSIAQISTPDSSSLLVQPYDKSSLK 180

Query: 181 SIEKAIVNSNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDAL 240
           +IEKAIVNS+LGMTPNNDGEVIRL+LPQLT+ERRKELSKVVAKQAEEGKVAVRNIRRDAL
Sbjct: 181 AIEKAIVNSDLGMTPNNDGEVIRLSLPQLTTERRKELSKVVAKQAEEGKVAVRNIRRDAL 240

Query: 241 KAYDKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 290
           KAY+KLEKEKKLSEDNVKDLSSDLQKLTD+YMKKID I+KQKEKELL V
Sbjct: 241 KAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIFKQKEKELLTV 277

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g01780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRFC_SPIOL2.4e-7662.35Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1[more]
RRFC_ARATH1.5e-7584.66Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=2 SV=... [more]
RRFC_DAUCA4.6e-7278.98Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2... [more]
RRFC_ORYSJ1.0e-7178.98Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07... [more]
RRFC_ORYSI1.0e-7178.98Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26... [more]
BLAST of Cp4.1LG05g01780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJG4_CUCSA2.3e-11077.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410660 PE=3 SV=1[more]
A0A061DPN2_THECC1.6e-9266.44Ribosome recycling factor isoform 1 OS=Theobroma cacao GN=TCM_004363 PE=3 SV=1[more]
A0A061DPY9_THECC1.4e-8861.54Ribosome recycling factor isoform 2 OS=Theobroma cacao GN=TCM_004363 PE=3 SV=1[more]
A0A067FZW6_CITSI3.5e-8765.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023857mg PE=3 SV=1[more]
V4VVJ3_9ROSI3.5e-8765.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021605mg PE=3 SV=1[more]
BLAST of Cp4.1LG05g01780 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G63190.18.6e-7784.66 ribosome recycling factor, chloroplast precursor[more]
AT3G01800.15.5e-2338.15 Ribosome recycling factor[more]
BLAST of Cp4.1LG05g01780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444671|ref|XP_004140097.1|3.3e-11077.24PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus][more]
gi|778716237|ref|XP_011657524.1|5.6e-11077.24PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus][more]
gi|659097082|ref|XP_008449432.1|2.1e-10976.55PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo][more]
gi|659097084|ref|XP_008449433.1|8.0e-10976.55PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo][more]
gi|590717367|ref|XP_007050597.1|2.3e-9266.44Ribosome recycling factor isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0032544 plastid translation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0009817 defense response to fungus, incompatible interaction
biological_process GO:0019408 dolichol biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:0009790 embryo development
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0044283 small molecule biosynthetic process
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009579 thylakoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0010333 terpene synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g01780.1Cp4.1LG05g01780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002661Ribosome recycling factorHAMAPMF_00040RRFcoord: 107..289
score: 26
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 114..289
score: 2.6E
IPR002661Ribosome recycling factorTIGRFAMsTIGR00496TIGR00496coord: 116..289
score: 3.1
IPR023584Ribosome recycling factor domainGENE3DG3DSA:1.10.132.20coord: 170..289
score: 6.5
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 126..287
score: 8.7
IPR023584Ribosome recycling factor domainunknownSSF55194Ribosome recycling factor, RRFcoord: 113..288
score: 3.4
NoneNo IPR availableunknownCoilCoilcoord: 236..270
scor
NoneNo IPR availablePANTHERPTHR20982:SF8RIBOSOME-RECYCLING FACTOR, CHLOROPLASTICcoord: 114..289
score: 2.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g01780CmaCh02G017980Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g01780CmoCh02G018440Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g01780Cla006049Watermelon (97103) v1cpewmB700
Cp4.1LG05g01780ClCG07G000300Watermelon (Charleston Gray)cpewcgB683
Cp4.1LG05g01780Lsi05G009370Bottle gourd (USVL1VR-Ls)cpelsiB616
Cp4.1LG05g01780Bhi05G000236Wax gourdcpewgoB0936
Cp4.1LG05g01780Carg27360Silver-seed gourdcarcpeB1212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g01780Cucurbita pepo (Zucchini)cpecpeB281
Cp4.1LG05g01780Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG05g01780Cucumber (Gy14) v1cgycpeB0514
Cp4.1LG05g01780Cucurbita maxima (Rimu)cmacpeB543
Cp4.1LG05g01780Cucurbita maxima (Rimu)cmacpeB550
Cp4.1LG05g01780Cucurbita moschata (Rifu)cmocpeB498
Cp4.1LG05g01780Cucurbita moschata (Rifu)cmocpeB505
Cp4.1LG05g01780Wild cucumber (PI 183967)cpecpiB751
Cp4.1LG05g01780Cucumber (Chinese Long) v2cpecuB748
Cp4.1LG05g01780Melon (DHL92) v3.5.1cpemeB695
Cp4.1LG05g01780Melon (DHL92) v3.5.1cpemeB692
Cp4.1LG05g01780Cucumber (Gy14) v2cgybcpeB851
Cp4.1LG05g01780Melon (DHL92) v3.6.1cpemedB826
Cp4.1LG05g01780Melon (DHL92) v3.6.1cpemedB828
Cp4.1LG05g01780Silver-seed gourdcarcpeB1062
Cp4.1LG05g01780Silver-seed gourdcarcpeB1063
Cp4.1LG05g01780Cucumber (Chinese Long) v3cpecucB0929