Cp4.1LG05g01670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g01670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription factor bHLH69, putative
Location	Cp4.1LG05 : 52928 .. 53595 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGTAATGTAGATAAGAATTTGGCTCATCGAGCCCATACGATGCTGAATATCTCAAATTGTATAAGCATTGATCCAAAATATTGGAGACTTGTAAAGAAATATAGTAAGCTAGTAGCAAAACCTTGGGCATGTTCTTGAGCAATAAGGGCCCATAGTCATAATGACTAATTGTTTCAATAAGCAGGCGACCTGCCAATACTTCGAAAGATCTTAACGTACATAATGTTGTTACGGGTGAAGTTGCTTTAAAATGATTTTAAGGGTGTAGATAAAACTGAGGCATCTATGTGGCTGCGCAGGACTTGAGTCAGAGTAAAATAGGCGGAGAATCCTCTTCTGAGCCTTTCCTATTCGTTGAGGTATCATCACATGTTTGATTTTAGCATTTCACTACTTTCTTTTGGAAAGTTCATGCAATACTCATGTACGGCTTTCTACTATTATTTCCATACTTAGAAATTTGGGGATGGAAAATAGAAGCTCCTTTATTATTGCTTTTGGTAGGGATATGGCCATTACATGAGCCATCAAGAGATGCAGGGCGAGCCACTTGAAGAGATGGTAGGAAAATTGCTGGAAGTTGACCCGTTAGCTGCTGCTCAGCTGCTGGAGAACAAGGGTCTATTCGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGA

mRNA sequence

ATGCTGGACTTGAGTCAGAGTAAAATAGGCGGAGAATCCTCTTCTGAGCCTTTCCTATTCGTTGAGGGATATGGCCATTACATGAGCCATCAAGAGATGCAGGGCGAGCCACTTGAAGAGATGGTAGGAAAATTGCTGGAAGTTGACCCGTTAGCTGCTGCTCAGCTGCTGGAGAACAAGGGTCTATTCGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGA

Coding sequence (CDS)

ATGCTGGACTTGAGTCAGAGTAAAATAGGCGGAGAATCCTCTTCTGAGCCTTTCCTATTCGTTGAGGGATATGGCCATTACATGAGCCATCAAGAGATGCAGGGCGAGCCACTTGAAGAGATGGTAGGAAAATTGCTGGAAGTTGACCCGTTAGCTGCTGCTCAGCTGCTGGAGAACAAGGGTCTATTCGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGA

Protein sequence

MLDLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGLFVMPMDFVEGLC

Homology

[Close]

BLAST of Cp4.1LG05g01670 vs. TrEMBL
Match: A0A0A0KHM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409980 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.6e-30
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGL 62
           DLSQSK+GGE SSEPF+FVEGYGHYM+HQEMQ EPLEEMVGKL+EVDPLAAAQLLENKGL
Sbjct: 235 DLSQSKLGGELSSEPFIFVEGYGHYMNHQEMQSEPLEEMVGKLMEVDPLAAAQLLENKGL 294

Query: 63  FVMPMDFVEGLC 75
           FVMPMDF EGLC
Sbjct: 295 FVMPMDFGEGLC 306

[Close]

BLAST of Cp4.1LG05g01670 vs. TrEMBL
Match: F6HQ71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00250 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGL 62
           DLSQS++GG+S+S+PF+F+EGYGHY+ H +M  EPLEEM+GKLLEV+P  A QLLE +GL
Sbjct: 305 DLSQSRLGGQSTSDPFIFLEGYGHYILHDQMLKEPLEEMMGKLLEVNPSEATQLLEGRGL 364

Query: 63  FVMPMDFVEGL 74
           +VMPM  VEGL
Sbjct: 365 YVMPMTLVEGL 375

[Close]

BLAST of Cp4.1LG05g01670 vs. TrEMBL
Match: A0A068U5N6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016026001 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-19
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGL 62
           +LSQS++GGESSS PF+ +EGYGH++   +MQ EPLEEM+G+LLEV+PLAA QLLE+ GL
Sbjct: 218 ELSQSRLGGESSSTPFILLEGYGHFLLRDQMQNEPLEEMMGRLLEVNPLAATQLLESGGL 277

Query: 63  FVMPMDFVEGL 74
            VMPM   EGL
Sbjct: 278 IVMPMSLAEGL 288

[Close]

BLAST of Cp4.1LG05g01670 vs. TrEMBL
Match: A0A061DPT0_THECC (Transcription factor bHLH69, putative OS=Theobroma cacao GN=TCM_004433 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-19
Identity = 45/73 (61.64%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1   MLDLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENK 60
           M +LS+S++GGE +S PF+F+EGYGHY  H++M  EPLEEM+GKLLE++P AA QLLE++
Sbjct: 263 MKELSRSRLGGEPTSNPFVFLEGYGHYALHEQMMNEPLEEMMGKLLEINPPAATQLLESR 322

Query: 61  GLFVMPMDFVEGL 74
           GLF+MP   V+GL
Sbjct: 323 GLFMMPRALVDGL 335

[Close]

BLAST of Cp4.1LG05g01670 vs. TrEMBL
Match: A0A0D2P8H1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G135600 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-17
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGL 62
           +LS+S++GGE +S PF+F EGYGHY+ H++M  EPLEEM+ KLLE++P AA QLLE++GL
Sbjct: 265 ELSRSRLGGEPTSNPFVFFEGYGHYVLHEQMINEPLEEMMAKLLEINPSAATQLLESRGL 324

Query: 63  FVMPMDFVEGLC 75
           ++MP   V+  C
Sbjct: 325 YMMPRALVDDFC 336

[Close]

BLAST of Cp4.1LG05g01670 vs. TAIR10
Match: AT5G64980.1 (AT5G64980.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-15
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 1   MLDLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENK 60
           M +LS+S++GGE  S P  F+EGYGHY+ H++   + LEE++  LL  D  AAA LLE+K
Sbjct: 271 MKELSRSRLGGEPISHPMAFIEGYGHYIHHEQTMAKSLEEVMEDLLTKDFDAAANLLESK 330

Query: 61  GLFVMPMDFVEGLC 75
           GL++ P+  V+G C
Sbjct: 331 GLYLTPLSSVQGSC 344

[Close]

BLAST of Cp4.1LG05g01670 vs. NCBI nr
Match: gi|778716184|ref|XP_011657518.1| (PREDICTED: transcription factor bHLH69 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGL 62
           DLSQSK+GGE SSEPF+FVEGYGHYM+HQEMQ EPLEEMVGKL+EVDPLAAAQLLENKGL
Sbjct: 191 DLSQSKLGGELSSEPFIFVEGYGHYMNHQEMQSEPLEEMVGKLMEVDPLAAAQLLENKGL 250

Query: 63  FVMPMDFVEGLC 75
           FVMPMDF EGLC
Sbjct: 251 FVMPMDFGEGLC 262

[Close]

BLAST of Cp4.1LG05g01670 vs. NCBI nr
Match: gi|700192688|gb|KGN47892.1| (hypothetical protein Csa_6G409980 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVDPLAAAQLLENKGL 62
           DLSQSK+GGE SSEPF+FVEGYGHYM+HQEMQ EPLEEMVGKL+EVDPLAAAQLLENKGL
Sbjct: 235 DLSQSKLGGELSSEPFIFVEGYGHYMNHQEMQSEPLEEMVGKLMEVDPLAAAQLLENKGL 294

Query: 63  FVMPMDFVEGLC 75
           FVMPMDF EGLC
Sbjct: 295 FVMPMDFGEGLC 306

[Close]

BLAST of Cp4.1LG05g01670 vs. NCBI nr
Match: gi|659097118|ref|XP_008449452.1| (PREDICTED: transcription factor bHLH69-like isoform X2 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-29
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQ-GEPLEEMVGKLLEVDPLAAAQLLENKG 62
           DLSQSK+GGE SSEPF+FVEGYGHYM+HQEMQ  EPLEEMVGKL+EVDPLAAAQLLENKG
Sbjct: 200 DLSQSKLGGELSSEPFIFVEGYGHYMNHQEMQISEPLEEMVGKLMEVDPLAAAQLLENKG 259

Query: 63  LFVMPMDFVEGLC 75
           LFVMPMDFVEGLC
Sbjct: 260 LFVMPMDFVEGLC 272

[Close]

BLAST of Cp4.1LG05g01670 vs. NCBI nr
Match: gi|659097120|ref|XP_008449453.1| (PREDICTED: transcription factor bHLH69-like isoform X3 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-29
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQ-GEPLEEMVGKLLEVDPLAAAQLLENKG 62
           DLSQSK+GGE SSEPF+FVEGYGHYM+HQEMQ  EPLEEMVGKL+EVDPLAAAQLLENKG
Sbjct: 199 DLSQSKLGGELSSEPFIFVEGYGHYMNHQEMQISEPLEEMVGKLMEVDPLAAAQLLENKG 258

Query: 63  LFVMPMDFVEGLC 75
           LFVMPMDFVEGLC
Sbjct: 259 LFVMPMDFVEGLC 271

[Close]

BLAST of Cp4.1LG05g01670 vs. NCBI nr
Match: gi|659097122|ref|XP_008449454.1| (PREDICTED: transcription factor bHLH69-like isoform X4 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-29
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 3   DLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQ-GEPLEEMVGKLLEVDPLAAAQLLENKG 62
           DLSQSK+GGE SSEPF+FVEGYGHYM+HQEMQ  EPLEEMVGKL+EVDPLAAAQLLENKG
Sbjct: 197 DLSQSKLGGELSSEPFIFVEGYGHYMNHQEMQISEPLEEMVGKLMEVDPLAAAQLLENKG 256

Query: 63  LFVMPMDFVEGLC 75
           LFVMPMDFVEGLC
Sbjct: 257 LFVMPMDFVEGLC 269

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g01670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g01670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHM8_CUCSA	8.6e-30	90.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409980 PE=4 SV=1	[more]
F6HQ71_VITVI	2.8e-20	67.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00250 PE=4 SV=...	[more]
A0A068U5N6_COFCA	4.0e-19	66.20	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016026001 PE=4 SV=1	[more]
A0A061DPT0_THECC	6.8e-19	61.64	Transcription factor bHLH69, putative OS=Theobroma cacao GN=TCM_004433 PE=4 SV=1	[more]
A0A0D2P8H1_GOSRA	3.7e-17	56.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G135600 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g01670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64980.1	3.1e-15	48.65	unknown protein	[more]

BLAST of Cp4.1LG05g01670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716184\|ref\|XP_011657518.1\|	1.2e-29	90.28	PREDICTED: transcription factor bHLH69 [Cucumis sativus]	[more]
gi\|700192688\|gb\|KGN47892.1\|	1.2e-29	90.28	hypothetical protein Csa_6G409980 [Cucumis sativus]	[more]
gi\|659097118\|ref\|XP_008449452.1\|	4.7e-29	90.41	PREDICTED: transcription factor bHLH69-like isoform X2 [Cucumis melo]	[more]
gi\|659097120\|ref\|XP_008449453.1\|	4.7e-29	90.41	PREDICTED: transcription factor bHLH69-like isoform X3 [Cucumis melo]	[more]
gi\|659097122\|ref\|XP_008449454.1\|	4.7e-29	90.41	PREDICTED: transcription factor bHLH69-like isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g01670.1	Cp4.1LG05g01670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 1..73 score: 5.9
None	No IPR available	PANTHER	PTHR16223:SF43	SUBFAMILY NOT NAMED	coord: 1..73 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g01670	CmaCh02G018060	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g01670	CmoCh02G018530	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g01670	Cla006061	Watermelon (97103) v1	cpewmB700
Cp4.1LG05g01670	MELO3C014408	Melon (DHL92) v3.5.1	cpemeB695
Cp4.1LG05g01670	ClCG07G000190	Watermelon (Charleston Gray)	cpewcgB683
Cp4.1LG05g01670	Lsi05G009230	Bottle gourd (USVL1VR-Ls)	cpelsiB616
Cp4.1LG05g01670	Bhi05G000253	Wax gourd	cpewgoB0936
Cp4.1LG05g01670	Carg26556	Silver-seed gourd	carcpeB1305

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g01670	Wild cucumber (PI 183967)	cpecpiB751
Cp4.1LG05g01670	Cucumber (Chinese Long) v2	cpecuB748
Cp4.1LG05g01670	Melon (DHL92) v3.5.1	cpemeB692
Cp4.1LG05g01670	Cucumber (Gy14) v2	cgybcpeB851
Cp4.1LG05g01670	Melon (DHL92) v3.6.1	cpemedB826
Cp4.1LG05g01670	Melon (DHL92) v3.6.1	cpemedB828
Cp4.1LG05g01670	Silver-seed gourd	carcpeB1062
Cp4.1LG05g01670	Cucumber (Chinese Long) v3	cpecucB0929
Cp4.1LG05g01670	Cucurbita pepo (Zucchini)	cpecpeB273
Cp4.1LG05g01670	Cucumber (Gy14) v1	cgycpeB0514
Cp4.1LG05g01670	Cucurbita maxima (Rimu)	cmacpeB543
Cp4.1LG05g01670	Cucurbita moschata (Rifu)	cmocpeB498