Cp4.1LG04g13100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g13100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 10757071 .. 10764393 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTCCAGGCCCATTTCAACACGAGAACCGGTTTCATCTTCCTCCTTCGGATATCTCAATACGAAACTAAGCGGCTGTTTCGGTAATTTTGCAGAAACCGAAGGGCTTTTCCCGCTCATTCGCAAAAACCCCAAATCCGACTGCCCCTTCTCTCCAAGCTTCCTGATAGTACCGGAGATTTTCACAAATCCGACATGGTCGACCGTGAACGCGATCGAGACAGGGGTCGCGACAGAGATAAAGATCGAGACCGTGATAGATACAAGGATAGGGAGCGAGACCGCGACCACCGTGAACGTGACCGGGACCGGGACCGGGAACGGGAGCGGCGTAGGGATCGAGAAGACCGTGACCGAGAACGGGAGCGTGGTCGGAGTAAAAGGTCACACACTCCCGACCGCCTCAGATCCCGCCACACTCGTTCTCGCACCCGCTCGCCGGACCGGCATCGTACGCGTTCTCTTTCTCGTTCCCCTGAGGACCGATCTCTTCGCCGCCGTCATCGCTCGCCGTCCCCAGAACATGCTCGGAAACGTCATCGTCGGGATTTGACTGTGGATGATGATAAGGAGAGGCAGAAAGTAGTGTCGGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAAAAACAAAGATGGCGTTGGTGGGGAAGAAGTAGTGGAGGAGGCTGTGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTTGATTCGACGAAGGGCAAGCCCGTCCCTGGTGCTGATGTAAGTGGCGTTAGGGCAGTGACCAAGCGGCAGCCTAGGCAATACATGAATCGTCGTGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGGTAGATAATTAATTTGGCTTGGTCGCCGAGGTTAGTCAATTGTAGGTCTATTAATTCTCAGTTTTTGATTTATTTGCTTCCATGGTTTCCTAGCTCCACTTGTAATTTGAAAACAAATATAATTACTAGGCTTCTTCGAAATTAATGTTGTGACAGTTGAATAGCACAGACCACTGCCTTCTGCATTGAAGTTGAAGCGGCAACGGGGGCGTTTCCAGGTTCTTTGTTATGATCACTGGAACGAGAGTGATTCTGCATGTGACCTTCTCTCTGAATTTCGGTTTTTATATTCAGATAAATTTGTTCAGTTAATTGTGTGCTTCGTTGCTCCTCTTCCTGGTCACATACATTTGAGAGGACAGCCGTTTCTTTGTCAATTTTATCTGTTTCAGAGGATTTTTAGACACACGTTACCAGTAGTTATTTGACTGTGGCAATATGAACTTTTCACTCATTTCAAAGTATATATACAAACAGTTCATTTTTCTTGTATAGGAGTTGAAGATAGGATCATATATTTTCTAGTACTATCAAATGAACTTGAAGGACCCCAAAGTTTATTGAACAATAATTTTGAAATTATAATTTCAGAATTATTAATGCTGTTAAGGAGACAAAATGATGTACTTGTTTCCAATGCAACTTCATAACCTTTGGATGTACTTGTTTCCAATTATCTTCATATAGAATCAAGATATTGATTCTATATTGAACTTATATAGATGGTCGATGGATACATCAATTTCTTATGTGAGTTAGCCTTATTGTGGCTATTACAAACCAACGGTTGATGGAAGTTAATAAATGGTGAGTTTAGGTACATTGTCAGAATTTCTGATACATGAAATAGGACAGAGCTTAGAGTTGTTGGCGGAAACTTGAATGAATGGTAAAATATGAAACTGAGTTTATTCTTCTGCAGATCATTGACCATAGGAGATGCTTGCAGATCGGAGTATTGTTATGTGCTCAAGCATTGTCTGGTAATGAAATATTGTTACTGAATTTGTTTCTGCTTAATCAGAAAAAATAAGTTCTCTTGGAGGTTTAGTAAGAAAAAGTTGACCTTGATTGTGTCTTTAAAGTTGGTTGATGGGTTTTGTTTCTTCTCAAGAAAAGAAAAGGATATAGTTGTTCCTCAAGGTGGTCGTTTTGAAAATAGTGTTTTAGAGGGAAGTTTGTCTGATGCCATTAATTCTCAAATTTGCTTGTCATCGTTGTGGGTTAGGCAGGGTTTTATGAGCTTTGAGGTCCCAGCTCTGGGATGTCATCCCAAGACTAAAAATTGTATTCAACTTCTTTGGTAGAGATGGATTCTAGGGTTTCGAGAATAGATCCTCTTTGGAGAACTTGGCAACATAAACATCTCAGAAGTAGATGGAATGACAAGCTTCTTAAATTTTCCACTCTAAAGCTCGAACACTCCTTGACAAGCAGTTTAAATTTTATTATATTCTCCTCAGGCTTTCTTTAGGCACGTTGTTGTTTGAACCCTAGCTAGCACCATCCTAATGGGTACTTTCATACTGGTTATATTTCTGTGCCACAAAGCTTAGCTTGTTCAAGCATCTCCATTTTGGCTAACAAGGTCCAAAACTCGGGCTACAAACGGACCGGGGGAGGATATATTATTAGTTTTTAATATTAACCTTCTTTATTCTCTTGTTGTGTACGTATTAGCTAAGAACTGTGGAAATTTGGATGGTATTTACTGATAAGAACTCATGGTCTTCAAGATGGAAAGGGAAACACATGTCTGAATTCTTCGATTCTGATTTTTTCAATGGATTCTATGAAAAATAGCAACCGTGCATTCGATGTAGTTTTGTTATTCACATTTTTATTGCCATTACAATGTGTCTTATAGCTTTCCATCTAGTTTGCTATCGTTAAGTTTAGTTGAATGATACTTAGTTGAAAACCCTCTATGGTCTGTGTAAGATTGTATTCATGAAACCTTGCAAGTCATGTTTGGGTTAGTTGAAGGCACTATTCGAATATGGAACGAGGGATATATTACCCCATTGTAGGAATTGGAGGATTCCCTGTTGCTTTAGCTCTTGTAATTCTGCAAGTTCGCAAGTTCGCTACGTTTATTTTTCGTATTCATTTTGCAATGTCTTTCTATCAGCTTAGTAGAATATGGATATGCTTTGACAGACTGAATTTAGACACTTGTATCGAACTTGGTTTCCTACTTGCCCCTCGAACGTAAGATTAGTTATTTTCAATGTAGTCGTAGCTGGTTCAGGGTCCATCAATGTTCGTACACCAAGTAAACCATTCAATCAATTAGAGCAAACAAATGTCATAAATTTATACTGCAAAACCTACTTATCTTATTTTAAAAGGAAAAGGGATCGATGGAATTTGTACATGTAATCAAATCTTCTTTGTCATTGACTTACTATTGTCGATGGAATTTTATGCCTATGGCCGTAATGAACATAACAATAATGAAAACTCTAGAAATGCATAAATTGAAACTTTATGGTTATGTTAATAAATTTCATGGTTTTGATGGATCCGAGTCGGATGCCAGGCCACTGGAACTATGTCTGACCACCACACATGAAGAGAAGCTAGCAGGAAACAATTGAAGGTGGTGAGCCACAAGTCATGATGATACAAACAACTGATGGCTCTTTCTTGCATGGAAATGAGATGAGGAGGCCTCCATTAAAGAAGAGGGGGAAGGGGCAAAAATAACAGTGGAAGGGGCAAAATAACAGTGGAAGGATCAAATGAAAGCCATTGAAGCAGAAGTCATCACTGAAGCTAAGAAATGACAGCGGGAACCTAACTCTTAAAGTTAAATTAGCTCACGGGCAATCGAAGTAGGAAGCATAAGACAACCATTTTATGTATACCCGTGACTTTTTTAGATCTTGACTAGATAGATTGTAAGAAATCATCAAATTCACCCAATTTGAAGACATCCTCAATACCCAATTTGAAGACACCCTCAATCTTTGTCTTCATTTTAAGAATATGAAATGGCTAGTTACAAAGATAATTTTGACGTAAATAGCATTAAAAAAGAATAATATTCTATAATAAAAAAGTTAAGAATTTGAATCATCTGCGTCTTAGACTCTGAAAAGAAACAATGACGATGACAATTTTTGCATGCAAGTATATGAAATTGATTCCAAAGAATGAGAAAAGGAGAGAGAAAGAAAACCGATAACTATACCAACTTTCTCTCAGATTTATTCTTTGAAGCTTTGTTCATCCTCTTGCATAGCTTGATCTACAGCAATGACAAGAACTCAGGTTCTTAACTTGTAGCCAACATGAACCTGCTTGCCTGTCAATTTCACACTCGATTGTTAACGATGTGTATAAATCATAATCATGCGGAGAAGGCACTCAAAACCCCAGAAACAAGTTTCATAAGTTAATTGCTAAATGGGATCAATCAGTGAGTAAGGATGTTAAATCATACTCATCTACAAATCTGTTCAATATGTTAAAAATGACGAATGTGGATGACATGTTAGCGCCATAAGTATGCTAAATAGAGCTAAGATGATGCCAATTCAATTGATGACAGTTTAAATGGAGAAAGAAAGGAAATGTATCTAAAGAATGCCTACAACCGATATAATTCCAATCTAGGACTTATTAAATTTGATGCTTTCTGAGAGGATCAATGCCAAAGCTTCATGCAGAATCCAGCAGGCACAGCACATGTTTTCTTGCTTGAAATGCATTCTGAAAAGGTGTCCACAAGTTGCTCTGCAAGAGCTGATGGATCTTCAATGAAGTTATCAACAAAGGCCTTCACAATCCTAACTTCTTGGGCTGTGGAACTCAAGCTGTACCAGGTTAAGAATTTTTGTCTGAAGTTCTTATCTATGTGTCCCTCGCATTCTAGCCATCTAATCAATTTTACATAATACTCAAAATCCTTATCTGAAATACCATTTGCCGTACAATCGGCATCTCGAATCTCTGCACTTCTCTTCTTAGATTTGCTGCCATGTCGGAGTTTGTCTCCCCCAGACCCGTTTTCTCGATCCTTAGCACTGGACTTCGATCGTCCACTCCTTCCAAGAACATCCTTAAGTATTTCCATCTTGCAAGGAGTAGCTGGCAATCCAGCCCCAGAGCTGTTAACAAATGGTGGCCATTTAGTTCCTTCTTGAACGGCAGAATTTGACCCATTATTTACGCTTGTATCTTCAATGATATGAACCTCAGAGGAATGTTTGTCTTCAAGTTTTGGAACATTAGGATCAGGCAGCATGCCACTTTTCTTTGTAACATGTTTCTCATCCAACAAAGAAACAGAATCTTTTGCTGTTTCTCCTCCACCGACATCAGTGCAGTTTATTGCATCTTTAGACAGGTTAGCAGTGATAATCTTGTTAGGATCTTTGCAATAAGAAAGATAGTTCTCTGTTTGACTATCACTCTGGTCGCTACAAGGCATTTCATTGTTTGTTTCATCTTCTACTGAAGAAGGATTAGAGAGCTCACTAACGTTGGTAACCGAACTCTGACTTCTTTCAATCACCAAGCATCCTGGGTGGTCCTCCCGAGCACTAGCAGTTGAGATCTGAACTTCACACATCCCCAAATCTCCTGTCCCATTAAAGGAAATGGCTTTGAAATAATATTCTGAAGATGGGGTCAGTCCTCGGACGACAAACCTCAAATTGGGTTGAGACAAGATGCAAGTTGGCTCTATAGGGTAATCTATATCACATGCCTTTCGATGCCATAGCCTGTAACCAACAGTTTCTCCAGAAGAAACATCTTCGGTACCCATAACCACTGTAAGGTATGTTGCATCAACATCTTCGAACCTTAATAAGTTTGTAGCTACCAAATTTGTGTCTGCAATATTAGCAAAAGACACTATATAATCGAAACACTATATAATTGAACACAAATATCATTTCCAATATCTTTTTTAGTTCTGTTGAATATATCAGCAATCACTTCAAAAGATTATCTTACATGCTAAATTAATTCTAGGGCAGCTGCACAAGTACACTAAGTGACCATGCGGAGGCTGTTCCAACTGCTAGCACTACAAAAAGCTTTGATTTTAATGCCCTGGTTTATTCGATCCATAAATCTAAATAACTAAAAAAATGGAATCCTTTTTTTTTATTTGTTCATAGAATTGCAACAAAATCATGAACAAATCAAATACCGCAAGCAAAAGATTGTTCATGGAACTACTATCGAGATTCTTCGGAACATATTTCATCCCAACAATGGGGGATATTCATAGTCAAAAGAAATTGAGATGAGCAAAATTGTTAGTAGCCTTACTTAAAATAAATTACCTTGTATAATGGAAATGGGCGATTGATGCAAGATCTTCTTGGAGAGCAAGGAGTCCAGTGTATCAATGGCTAACGTGCAGAGTTTCTGAACCTCTGGTCCTGAAGAAAGCCTGTTCACTATGCCTCTGCCCGTACCAACCGGTACACCAGTCAAAGGACCCACTTCAGCTTCAAGTTTCTTCACAGCCTCATCCACGATCCGACAAACATCTTGATACTTTTCACCTTCACTCAAAATCTTTTTGGCTAAAGAGATGCGGTAACACAGTATATCCACCCTTCGGGTTTCCTTTGCCTTCATCAATTGTTTTCTCCAACTCCTTCAGAAATGAATCCAAGTGTCATTCACATAGTAAATACTAAATATTCAAGGAAGTCTGATGCAGTGCAAAAATAAATAGTATTCAAATATCCAGGATGTTGCAAGACTTAACAGAATTGTTAGTCAGTAAAAGTCGGTAATTACCCAAGCAAGTCGTTGACTTTTCCACATGATAGACAATAGAAAGTCCGTTCAATTCCAACCTGCTGTCCTTTAGAAATTCCAGATTTTTCATGCTTCAATGCACATTCAAGATGGCATGACAAACCACATGAAGTGCCTTGAAATGGTGGGTCAGAGCTGCAACTTAACCATAGACTAGGATCCTTATTATCATCATATTGATAGCAGATGCAGCATGAACACCTCTTGCAAAATTTATCATCTTCATTTAAGGTAGCCTTGCATGCTGAATTTCTGCAGTAAACTGCAATATTTGAGTCACTCCTAATGCTACTGATAGGAATATTGTTTTCCGGAACTGGTAGCCGTGATGGCTGATCAATTTTTCTTTGCCTTTTGGTAATCTTTGGAGAAAGATAGGGTGAAGAAGATTGCTGGTCAAGGTCTGCTACATTCTCAGTTGACCCTGATTTCTTTTCAGTAACAATCTTCAGAAGGTTCTCGACTATTTTCAGTTTTGTTAATCCGGTATATTTTCTCTCTTTTCCCATCTCTGCACACAGGATCTCTAGAATCTCTTGACGACTCCAGGACTGAAGCAGTTCAGAAGCATGTGGCTGATCTGATATTTCATAGACTAAATTTCTTTTCTCCTCCATGCTCGTCTTACTGCATTTTGATGGATCAAGAGAGGCTCCTAGTATCAACA

mRNA sequence

ATTGTCCAGGCCCATTTCAACACGAGAACCGGTTTCATCTTCCTCCTTCGGATATCTCAATACGAAACTAAGCGGCTGTTTCGAAACCGAAGGGCTTTTCCCGCTCATTCGCAAAAACCCCAAATCCGACTGCCCCTTCTCTCCAAGCTTCCTGATAGTACCGGAGATTTTCACAAATCCGACATGGTCGACCGTGAACGCGATCGAGACAGGGGTCGCGACAGAGATAAAGATCGAGACCGTGATAGATACAAGGATAGGGAGCGAGACCGCGACCACCGTGAACGTGACCGGGACCGGGACCGGGAACGGGAGCGGCGTAGGGATCGAGAAGACCGTGACCGAGAACGGGAGCGTGGTCGGAGTAAAAGGTCACACACTCCCGACCGCCTCAGATCCCGCCACACTCGTTCTCGCACCCGCTCGCCGGACCGGCATCGTACGCGTTCTCTTTCTCGTTCCCCTGAGGACCGATCTCTTCGCCGCCGTCATCGCTCGCCGTCCCCAGAACATGCTCGGAAACGTCATCGTCGGGATTTGACTGTGGATGATGATAAGGAGAGGCAGAAACACAGACCACTGCCTTCTGCATTGAAGTTGAAGCGGCAACGGGGGCGTTTCCAGATCATTGACCATAGGAGATGCTTGCAGATCGGAGTATTGTTATGTGCTCAAGCATTGTCTGGATCTCTAGAATCTCTTGACGACTCCAGGACTGAAGCAGTTCAGAAGCATGTGGCTGATCTGATATTTCATAGACTAAATTTCTTTTCTCCTCCATGCTCGTCTTACTGCATTTTGATGGATCAAGAGAGGCTCCTAGTATCAACA

Coding sequence (CDS)

ATTGTCCAGGCCCATTTCAACACGAGAACCGGTTTCATCTTCCTCCTTCGGATATCTCAATACGAAACTAAGCGGCTGTTTCGAAACCGAAGGGCTTTTCCCGCTCATTCGCAAAAACCCCAAATCCGACTGCCCCTTCTCTCCAAGCTTCCTGATAGTACCGGAGATTTTCACAAATCCGACATGGTCGACCGTGAACGCGATCGAGACAGGGGTCGCGACAGAGATAAAGATCGAGACCGTGATAGATACAAGGATAGGGAGCGAGACCGCGACCACCGTGAACGTGACCGGGACCGGGACCGGGAACGGGAGCGGCGTAGGGATCGAGAAGACCGTGACCGAGAACGGGAGCGTGGTCGGAGTAAAAGGTCACACACTCCCGACCGCCTCAGATCCCGCCACACTCGTTCTCGCACCCGCTCGCCGGACCGGCATCGTACGCGTTCTCTTTCTCGTTCCCCTGAGGACCGATCTCTTCGCCGCCGTCATCGCTCGCCGTCCCCAGAACATGCTCGGAAACGTCATCGTCGGGATTTGACTGTGGATGATGATAAGGAGAGGCAGAAACACAGACCACTGCCTTCTGCATTGAAGTTGAAGCGGCAACGGGGGCGTTTCCAGATCATTGACCATAGGAGATGCTTGCAGATCGGAGTATTGTTATGTGCTCAAGCATTGTCTGGATCTCTAGAATCTCTTGACGACTCCAGGACTGAAGCAGTTCAGAAGCATGTGGCTGATCTGATATTTCATAGACTAAATTTCTTTTCTCCTCCATGCTCGTCTTACTGCATTTTGATGGATCAAGAGAGGCTCCTAGTATCAACA

Protein sequence

IVQAHFNTRTGFIFLLRISQYETKRLFRNRRAFPAHSQKPQIRLPLLSKLPDSTGDFHKSDMVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLTVDDDKERQKHRPLPSALKLKRQRGRFQIIDHRRCLQIGVLLCAQALSGSLESLDDSRTEAVQKHVADLIFHRLNFFSPPCSSYCILMDQERLLVST
Homology
[Close]
BLAST of Cp4.1LG04g13100 vs. TrEMBL
Match: A0A0A0LU61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423230 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.2e-38
Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 1 

Query: 62  MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR----------DRDRERERRRDRE 121
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR          +RDR+RERRRD++
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 122 DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEH 181
           DRDRERERGRSKRS TPDR RSR  RSRTRSPDRHR+RSLSR+PEDR  RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 182 ARKRHRRDLTVDDDKERQK 191
           ARKRHRRDLT DD+KERQK
Sbjct: 121 ARKRHRRDLTADDEKERQK 137

[Close]
BLAST of Cp4.1LG04g13100 vs. TrEMBL
Match: M5XT32_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011504mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1 

Query: 86  DRERDRDH-RERDRDRDRERERRRDREDRDRERERGR--SKRSHTPDRLRSRHTRSRTRS 145
           DRERDRD  RER+RDRDR+RERRRDR+DRDR+R+R R  SKRS TP+R R RHTRSRTRS
Sbjct: 3   DRERDRDRDRERNRDRDRDRERRRDRDDRDRDRDRDRVRSKRSRTPERTRPRHTRSRTRS 62

Query: 146 PDRHRTR----SLSRSPEDRSLRRRH---RSPSPEHARKRHRRDLTVDDDKERQK 191
           PDR+R+R    S SRSP+DRS RRRH   RSPS E ARKR RR+ T +D++ERQK
Sbjct: 63  PDRYRSRTRSVSRSRSPDDRSHRRRHHHNRSPSAE-ARKRQRREPTAEDERERQK 116

[Close]
BLAST of Cp4.1LG04g13100 vs. TrEMBL
Match: W9QVX9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016764 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 76/111 (68.47%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 86  DRERDRDHRERDRDRDRERERRRDREDRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDR 145
           DRERDRD     RDRDR+RERRRDR+DRDR    GRSKRSHTPDR RSRH RS    PDR
Sbjct: 3   DRERDRD-----RDRDRDRERRRDRDDRDR----GRSKRSHTPDRTRSRHPRS----PDR 62

Query: 146 HRTRSLSRS---PEDRSLRRR---HRSPSPEHARKRHRRDLTVDDDKERQK 191
           +R+R+LSRS   P+DRS RRR   HR+PSPE +RKRHRRD T DD++ERQK
Sbjct: 63  YRSRTLSRSRSPPDDRSHRRRHHHHRTPSPE-SRKRHRRDSTADDERERQK 99

[Close]
BLAST of Cp4.1LG04g13100 vs. TrEMBL
Match: A0A061GRR3_THECC (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform 1 OS=Theobroma cacao GN=TCM_039191 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 81/127 (63.78%), Postives = 88/127 (69.29%), Query Frame = 1 

Query: 74  DRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDR--DRERERGRSKRSHTPDRL 133
           DRD  RDRDR          RERDRDRDRERERRRDREDR  DR+RER RSKRS TP+R 
Sbjct: 3   DRDWPRDRDR---------ERERDRDRDRERERRRDREDRERDRDRERTRSKRSRTPERT 62

Query: 134 RSRHTRSRTRSPDRHRTRSLS----RSPE---DRSLRRRHRSPSPEHARKRHRRDLTV-D 191
           RSRHTRSRTRSPDR+R RS S    RSPE    R  R RHR+PS E  RKRHR +    D
Sbjct: 63  RSRHTRSRTRSPDRNRYRSRSRSHTRSPERSSHRHHRHRHRTPSAEPPRKRHRHESEERD 120

[Close]
BLAST of Cp4.1LG04g13100 vs. TrEMBL
Match: A0A067KX07_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08658 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-12
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 1 

Query: 68  DRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDR----EDRDRERERGRSK 127
           DRDR RDRD+DRDRDR +DRER RD  +R+RDRDRER+R RDR      R R  +R RS 
Sbjct: 3   DRDRTRDRDRDRDRDRDRDRERRRDKEDRERDRDRERDRARDRIRSTRSRTRSPDRTRSA 62

Query: 128 RSH--TPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRR-RH-RSPSPEHARKRHRRD 187
           RS   +PDR RSRHTRSRTRSP+R+R+R  SRSPE RS RR RH R+PSP   RK HR +
Sbjct: 63  RSRTRSPDRTRSRHTRSRTRSPERYRSR--SRSPESRSHRRHRHQRTPSPSPPRKHHRHE 122

Query: 188 LTVDDDKERQKHR 193
                +KER + R
Sbjct: 123 TEDGREKERDRER 133

[Close]
BLAST of Cp4.1LG04g13100 vs. NCBI nr
Match: gi|659107269|ref|XP_008453595.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 9.9e-40
Identity = 116/139 (83.45%), Postives = 123/139 (88.49%), Query Frame = 1 

Query: 62  MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR----------DRDRERERRRDRE 121
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR          +RDR+RERRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 122 DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEH 181
           DRDRERERGRSKRSHTPDR RSR  RSRTRSPDRHR+RSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 182 ARKRHRRDLTVDDDKERQK 191
           ARKRHRRDLT DD+KERQK
Sbjct: 121 ARKRHRRDLTADDEKERQK 137

[Close]
BLAST of Cp4.1LG04g13100 vs. NCBI nr
Match: gi|449457171|ref|XP_004146322.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 3.2e-38
Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 1 

Query: 62  MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR----------DRDRERERRRDRE 121
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR          +RDR+RERRRD++
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 122 DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEH 181
           DRDRERERGRSKRS TPDR RSR  RSRTRSPDRHR+RSLSR+PEDR  RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 182 ARKRHRRDLTVDDDKERQK 191
           ARKRHRRDLT DD+KERQK
Sbjct: 121 ARKRHRRDLTADDEKERQK 137

[Close]
BLAST of Cp4.1LG04g13100 vs. NCBI nr
Match: gi|470120729|ref|XP_004296443.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 1 

Query: 62  MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 121
           M DRER+RDR RDR++ RDRDR +DR RDRD R+RDRDR               +R+R R
Sbjct: 1   MADRERERDRDRDRERIRDRDRDRDRRRDRDDRDRDRDR---------------DRDRVR 60

Query: 122 SKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRS--PEDRSLRRR---HRSPSPEHARKRH 181
           SKRS TP+R R+RHTRSRTRSPD++ +RSLSRS  PEDRS RRR   HRSPSPE +RKR 
Sbjct: 61  SKRSRTPERTRARHTRSRTRSPDQYHSRSLSRSRTPEDRSHRRRHHHHRSPSPE-SRKRA 118

Query: 182 RRDLTVDDDKERQK 191
           RR+ TV+ +K+RQK
Sbjct: 121 RREPTVEAEKDRQK 118

[Close]
BLAST of Cp4.1LG04g13100 vs. NCBI nr
Match: gi|645234349|ref|XP_008223770.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Prunus mume])

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 84/136 (61.76%), Postives = 100/136 (73.53%), Query Frame = 1 

Query: 62  MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 121
           M DRERDRDR RDR++DRDRDR  +R RDRD R+RDRDRDR             +R+R R
Sbjct: 1   MGDRERDRDRDRDRNRDRDRDR--ERRRDRDDRDRDRDRDR-------------DRDRVR 60

Query: 122 SKRSHTPDRLRSRHTRSRTRSPDRHRTR----SLSRSPEDRSLRRRH---RSPSPEHARK 181
           SKRS TP+R+R RHTRSRTRSPDR+R+R    S SRSP+DRS RRRH   RSPS E ARK
Sbjct: 61  SKRSRTPERIRPRHTRSRTRSPDRYRSRTRSVSRSRSPDDRSHRRRHHHNRSPSAE-ARK 120

Query: 182 RHRRDLTVDDDKERQK 191
           R +R+ T +D++ERQK
Sbjct: 121 RQKREPTAEDERERQK 120

[Close]
BLAST of Cp4.1LG04g13100 vs. NCBI nr
Match: gi|1009105406|ref|XP_015893702.1| (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Ziziphus jujuba])

HSP 1 Score: 97.1 bits (240), Expect = 5.3e-17
Identity = 83/139 (59.71%), Postives = 99/139 (71.22%), Query Frame = 1 

Query: 57  FHKSDMVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRE 116
           F  + M DR+RDRDR RDRD+DRDRDR  +R RDRD RER               +R+RE
Sbjct: 13  FILNKMGDRDRDRDRARDRDRDRDRDR--ERRRDRDERER---------------ERERE 72

Query: 117 RERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSL--SRSPEDRSLRRR---HRSPSPEH 176
           R+R RSKRS TP+R RSRHTRSRTRSP+ HR+RSL  SRSP+DRS RRR   HR+PSPE 
Sbjct: 73  RDRVRSKRSRTPERTRSRHTRSRTRSPELHRSRSLSRSRSPDDRSHRRRHHHHRTPSPE- 132

Query: 177 ARKRHRRDLTVDDDKERQK 191
             KR RR+ T +D++ERQK
Sbjct: 133 PWKRQRRESTAEDERERQK 133

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g13100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g13100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU61_CUCSA2.2e-3882.01Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423230 PE=4 SV=1[more]
M5XT32_PRUPE1.8e-1669.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011504mg PE=4 SV=1[more]
W9QVX9_9ROSA1.6e-1568.47Uncharacterized protein OS=Morus notabilis GN=L484_016764 PE=4 SV=1[more]
A0A061GRR3_THECC2.5e-1363.78U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform 1 OS=Theobroma c... [more]
A0A067KX07_JATCU4.7e-1260.15Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08658 PE=4 SV=1[more]
BLAST of Cp4.1LG04g13100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g13100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107269|ref|XP_008453595.1|9.9e-4083.45PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo... [more]
gi|449457171|ref|XP_004146322.1|3.2e-3882.01PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sati... [more]
gi|470120729|ref|XP_004296443.1|1.4e-1761.19PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Fragaria ves... [more]
gi|645234349|ref|XP_008223770.1|1.8e-1761.76PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Prunus mume][more]
gi|1009105406|ref|XP_015893702.1|5.3e-1759.71PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Ziziphus juj... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008380 RNA splicing
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g13100.1Cp4.1LG04g13100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g13100CmaCh11G003860Cucurbita maxima (Rimu)cmacpeB153
Cp4.1LG04g13100Carg09032Silver-seed gourdcarcpeB0847
Cp4.1LG04g13100Carg15237Silver-seed gourdcarcpeB1106
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g13100Wax gourdcpewgoB0896
Cp4.1LG04g13100Cucurbita pepo (Zucchini)cpecpeB129
Cp4.1LG04g13100Cucurbita pepo (Zucchini)cpecpeB360
Cp4.1LG04g13100Cucurbita pepo (Zucchini)cpecpeB499
Cp4.1LG04g13100Cucumber (Gy14) v1cgycpeB0142
Cp4.1LG04g13100Cucumber (Gy14) v1cgycpeB0176
Cp4.1LG04g13100Cucurbita maxima (Rimu)cmacpeB092
Cp4.1LG04g13100Cucurbita maxima (Rimu)cmacpeB195
Cp4.1LG04g13100Cucurbita maxima (Rimu)cmacpeB782
Cp4.1LG04g13100Cucurbita moschata (Rifu)cmocpeB068
Cp4.1LG04g13100Cucurbita moschata (Rifu)cmocpeB129
Cp4.1LG04g13100Cucurbita moschata (Rifu)cmocpeB168
Cp4.1LG04g13100Cucurbita moschata (Rifu)cmocpeB736
Cp4.1LG04g13100Wild cucumber (PI 183967)cpecpiB641
Cp4.1LG04g13100Wild cucumber (PI 183967)cpecpiB669
Cp4.1LG04g13100Cucumber (Chinese Long) v2cpecuB637
Cp4.1LG04g13100Cucumber (Chinese Long) v2cpecuB666
Cp4.1LG04g13100Bottle gourd (USVL1VR-Ls)cpelsiB530
Cp4.1LG04g13100Bottle gourd (USVL1VR-Ls)cpelsiB556
Cp4.1LG04g13100Watermelon (Charleston Gray)cpewcgB587
Cp4.1LG04g13100Watermelon (Charleston Gray)cpewcgB616
Cp4.1LG04g13100Watermelon (97103) v1cpewmB677
Cp4.1LG04g13100Watermelon (97103) v1cpewmB679
Cp4.1LG04g13100Melon (DHL92) v3.5.1cpemeB615
Cp4.1LG04g13100Cucumber (Gy14) v2cgybcpeB110
Cp4.1LG04g13100Cucumber (Gy14) v2cgybcpeB233
Cp4.1LG04g13100Cucumber (Gy14) v2cgybcpeB236
Cp4.1LG04g13100Melon (DHL92) v3.6.1cpemedB727
Cp4.1LG04g13100Silver-seed gourdcarcpeB0084
Cp4.1LG04g13100Cucumber (Chinese Long) v3cpecucB0797
Cp4.1LG04g13100Cucumber (Chinese Long) v3cpecucB0827
Cp4.1LG04g13100Cucumber (Chinese Long) v3cpecucB0830