Cp4.1LG04g11800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g11800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosome biogenesis regulatory-like protein
LocationCp4.1LG04 : 8504731 .. 8510251 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTCGAACGGAAAAGGAAACGGAAGGACAGAGAAATCGGGGAAGGAAAAGAGCAAAAGCGGCAGCCGTTTTCTTCTCGATTCAGTCGGTTTGATCTGTCTTCGCCTCTCATTTCGCTACTTTATGCGTTTTCTTGTAACTTTCTGCGTTTTTTTTTTTTGTTGTAACTTTCTGCTTGTGCTTACGATCAGATCTTCTCGACTCTTAGAACATAATTTCGATTTGGATCTGAACTCTTTCATCTCTCTCTCTCTCTCTCTAAAAATTTGCAGAGAATCCGAATGATTTCTTCCTCTTTTGTAGAGATTTGCTGCAAGAATACAAAACTTACGCTCTTTCTTTCGAGGAAATGGCAGAAAAGAAGCATAAACATTTCCCCTCTCACTCTTAGGGTTGCAGAAACGAGAAATACAAGCCTCTCTCTCTCTATGAGAAGCTTCAGAGATCGAAATTCAAGTTCTATGTTCTTTCTCTCTCTAGAAAGTTCGCAACAACAGAGCAAATTTCCAGGTTAGTTGAGTTGCTCGAGTTTTTCAGGTGATCTAATGTCGAAATTCAAACATATCAAATGCGTGCACAGTGTTCAAGTTAAATGAATCATGTTTCGGTAGATCAAGTTCTCAGGTCGAACGAGTCTGTTAATATAACCGCTATTTTCACTTTCTCACATCCTGATTGAGGAAGGGTTATAGCTAACGAGGACGATCAGAATTTTAATTTAGAGAGAGGAAGACCGACTAGGCAACTTGAGACATAGTAAGAAAACATATTCACCGTTTTGGAAGCTCACGTCCTAAGGCGACAGCGTTGTAATATTAGAAAAAATGCAAAAGCCAACGAACCCTTCAGTGTAGCATTAAGAATTGCAAATTCAGACGGCACACGCTTTTGTAGATCAATTAATGTAGTTTTTTCCCAAATATTTACGCGTTAGAGCGCAACAACGACAACATATTCACCGTTTTGGAAGAGACTTTTGGGATCTCGACATAACCACACGCTCGCCTCTTACATAGGAGACAACTTTAGAGCATAAAGAACAGATATTCGAAACTCGAGATTCTAGAGACCGTACAAAAGGCAATATATCGCAATGTAGTCTTACAAATATATTTTCATGGATTAATTTGATTTCTTATTATAATTATTATTATTATTTTTTTTTTTTTTTTCAGAGAGAAAAAATATTTTAATTATCATATTTATTGAGTAAAAGAAAAGGTATAAAGTCATATTTATTAGATATTTTTAAAAAAATCATATATTAATTTAAGTTACGAAATTATATAAAGTATAAATAATAATTATTATTATTAAATAGAGAAGAAAACGGTAGCTAGGGTTTTAGAGATTAGTCCTCAGTCGTCGGCGGTTTACCAAAGCCTTACATTGCAGAATCATCGAACTCATAATCGGAAAAGGTTGTAAGGTGGCCGGAGCATGGAGACGGAGAATCAACAGCCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATCAATTTCCTTCCCTCTCATCCTCCAGGTTAGTTGTTTTTCTCTCCCAAATTATACTCGGACGACGGATTCTTCTTGCAGTACGCACTCTCTCGCGAATTTTTACGAATATCGTATCTTAAGTAGCTAGATGAAACGAGGTTTGTAGAGAATTTTGCCCCGAATTTCTCGTGTTTTGTTACACTGAGGTTGAAGAACACTGGCGGGATGTATTTTTTGGCTTTGCGATCCTATGCTATTCACATTACGTTGTACTGTTTTCTGAAATTCGATGGTGCAGATTTTATGGCATTTGTTTCGCATACGATGAATTTCTAGTAGATATAAGCATTGGGTGCACGTTCGTGAACATTTATGTCTGCATTGGTGACTCTTAAGCGTTAAATTATTGCCAATTAAATTAGAAATCCTTAACCTGTGAATATTTATCTTCCTTCTTTGATGTTCGGAATATATAATTGCTTGTATTATTTGAAGAATACCGGTACCATCTTCGCCTAATTTATTTTTTTGTTTGATTATTAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTGTAAGGCTTCATGCTACTTTATAAATTTCTTCCCTTGGTAACCACTGTCACTGATCGTGCTGCATCCATGAGCAGCGGCTGCAAATGTTAATTTTGTAGTTCTTGGCTGAGATGATCTTTTCTTTTCTTTTTCCAGTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGTCAGTTGCTTTGTGTGCCCTGTGCTAGGGTATATTTGATACAGCACATCCCCCNAACAAAATTAGTTAATCTGATAGCAATATATTTGTTTCCAAGTGGAACTTATTCATAATTATTGTTTTTTTCAAACTCTTGCAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTACGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGGTAGTATTTTATGATGATTTGTTCTACTATCTATTTATTCTTTTTGTGAACATACCCATAATTGAGTCCAAGATGACCAGAAAGTTATGCTTTTGCTTTTTGTGAACTTGATTTGCAAATTTGCATAAAGCTGCAACATCCAGATAGCCAACTGATGATCCAATTTAATTACTGGTTTCTCTTTGTTCTTAAGACACGTAAAATTAGCTGAAATGGCTGTTAAGAGCATGGTTGATTTGTCTTGCAGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAGCCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGAAGGCTGCAAAAGTTGGCGCTCTACCAAGGTTTTACCTCTCAAGACAGTTTTGGTTGTTGAATATGATATAAGTTGTACCCCACTTTGTTGTTTATACACGAGTTTCATTGAACTTTTTAACTTAGATCAACGTTTTCCAAAAAATGTTTTTGTCAACTACTCCATTTAAGACATCATCCATGCTGTTATTCTCAAGTTGCCCATCTTAGTGTTCATCTTCAATCATGTCTTCCTTTCCTTCCCGTCACAATCTGTTCTTGATAGCATAAAATTCACTGTATCAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGGTTAACTGAACCAGCTTGTTGATGTACATTTTTGCTTTAGTTTACTTTATATTTATCGTAAAAAATTGTGATGCATTTTTTGTGTTTGGATGCAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGTTTGACTGCTAAACTGCACATTACATTTTAAAGGATGAACAAATGCATATATCTTATTTTTTGATGCTCCATGTAACTCTTGTGGTTTTAAAATGATTATTCGTACTCACGTGGCCTAAAACCACCGCCCTTTTTATTTTCTTGTAAATTCGTTTAGCTTGTTGAGTTATGCTCGTATTGATTGCCATTGTTATGCTTGAATATTATATGATTCAACATGATTTCTAATGGACCGTGTGATGTAAATAGATCATGACGTGATGGATATTTGTGTATATGAGTTATCATGCAAGTGAAGCTCATTACTTCTGAGAAGCAAATTGATTTTGTTATCACATTAAATTCTAAGCCTATTTTGGATTCCTCATCTTGATTTTCAGGCTGTCAACATGTACACTGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCGAGCAACAAGTTGAAACCAAATAAGAAACTCCAGAAGAAGCCATTGAAGAAGGGATCTCCAAAGAATGGCAAGGCAAAATGAACGAATTTTCGCAATAGATCATGAGCTCTTGTAGAGGTGCGCGTGTTAGATTACATTCTGTCTGACATTCTGAATGTACCATTATTATCATTATTTAGTAGTGAAGAAAATTTTGAAATCATGTTTGTTTTCCCTATGATAGTCCTTTTAATGGCTTCGAAGCAATTATATAGTAGCTTTTTTACTTTGGTTTCTTAAATTTTAAATATGTTTAGTAGATCTAGCTGTCAAATATTTTAAAGAACACAGAGAATGTACACCGAAGATCATGAAATTCGTTCGAGATAGATAAATCAAACACAATTGTGCGTCTTAACCTGTCACCCTGTTAAATTATGTTTAAATTCGTAATGTAGACAGAATGTTTAATATCGATCGATCAAATTAATTGAAACTTTACTTAAATCTCGTCCTGAATATCTATGTAGATGAAAAATGCTCGTCTTACAAGTGATCGGACATCGTTTTACCAAAACTAACAAAGAAAAGCAAAACAAAACAACATTTTGTTCAAGAAGAAGAGACACTCACACTGCTACAAGGCCGCTGAAGGTGGTGGGCGTTCACATACCTGGTTTCCGCAATTCACTTTCGCCATGTGCAAAATGGCATCTTTCTCTAAACGTACAATTACCCTTTGCAAAATTAGCACAAAGCTTGGTCTTGAAGTTGTTTGCTGAGTGCTGAGAATGCTGCTGCTGCTGCCTCATGGCATTATTGGCAGAGGCTGCGCCGACGTTTGCAATCAACTCGCGCACCATTGAACTAGCAAGATTGATCTGATCAAACGTACCCTCGAGCTCAATGTTCTTCAAGCTAGAGTCTGACTCGTGATCTTTTATAGAAAGTCTTGCTCCTGTCATTCGACAGATATTCTTCGAGTTGACACCATTCTTCCCAATTATGGGACCTGCAAGCGATGCATCGACGCTAATCTTTGCTGTTGCAGACGCACCGAAGCTAGCAGCAGGTCCATGGTTGGGTTGTGGCGGAGGCACATTCCAGCCACCACCCATTCTGGGTTGTTGTGCTAGTGGTCCTCCTCCCATTCCACCGTGTTCTGGTGGAGGATTTGGCCTTCCAAGGTCCCACTCGCCATGAGCAAAATGGCATTTGTCACCGAATCTGCAGCCTTCGGCTGAGTTGAATTTGTTGCACAAACGTGTCTTGACAGCCGGAGGAGAAACACCATCTGGAAACGATGGAGGGGCGACAGGATTTCTAATGCCAGGGGAAATAGCAGGACTGTTCATCTGAGAAATTGCTTTGAATCCACCAGGAACATAATGTGCAAAATGACACCCCTCACCAAAAGGGCAACCAGAAGTGCTGCA

mRNA sequence

TGTTCGAACGGAAAAGGAAACGGAAGGACAGAGAAATCGGGGAAGGAAAAGAGCAAAAGCGGCAGCCGTTTTCTTCTCGATTCAAGAATCCGAATGATTTCTTCCTCTTTTGTAGAGATTTGCTGCAAGAATACAAAACTTACGCTCTTTCTTTCGAGGAAATGGCAGAAAAGAAGCATAAACATTTCCCCTCTCACTCTTAGGGTTGCAGAAACGAGAAATACAAGCCTCTCTCTCTCTATGAGAAGCTTCAGAGATCGAAATTCAAGTTCTATGTTCTTTCTCTCTCTAGAAAGTTCGCAACAACAGAGCAAATTTCCAGAATCATCGAACTCATAATCGGAAAAGGTTGTAAGGTGGCCGGAGCATGGAGACGGAGAATCAACAGCCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATCAATTTCCTTCCCTCTCATCCTCCAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTACGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAGCCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGAAGGCTGCAAAAGTTGGCGCTCTACCAAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGCTGTCAACATGTACACTGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCGAGCAACAAGTTGAAACCAAATAAGAAACTCCAGAAGAAGCCATTGAAGAAGGGATCTCCAAAGAATGGCAAGGCAAAATGAACGAATTTTCGCAATAGATCATGAGCTCTTGTAGAGATGAAAAATGCTCGTCTTACAAGTGATCGGACATCGTTTTACCAAAACTAACAAAGAAAAGCAAAACAAAACAACATTTTGTTCAAGAAGAAGAGACACTCACACTGCTACAAGGCCGCTGAAGGTGGTGGGCGTTCACATACCTGGTTTCCGCAATTCACTTTCGCCATGTGCAAAATGGCATCTTTCTCTAAACGTACAATTACCCTTTGCAAAATTAGCACAAAGCTTGGTCTTGAAGTTGTTTGCTGAGTGCTGAGAATGCTGCTGCTGCTGCCTCATGGCATTATTGGCAGAGGCTGCGCCGACGTTTGCAATCAACTCGCGCACCATTGAACTAGCAAGATTGATCTGATCAAACGTACCCTCGAGCTCAATGTTCTTCAAGCTAGAGTCTGACTCGTGATCTTTTATAGAAAGTCTTGCTCCTGTCATTCGACAGATATTCTTCGAGTTGACACCATTCTTCCCAATTATGGGACCTGCAAGCGATGCATCGACGCTAATCTTTGCTGTTGCAGACGCACCGAAGCTAGCAGCAGGTCCATGGTTGGGTTGTGGCGGAGGCACATTCCAGCCACCACCCATTCTGGGTTGTTGTGCTAGTGGTCCTCCTCCCATTCCACCGTGTTCTGGTGGAGGATTTGGCCTTCCAAGGTCCCACTCGCCATGAGCAAAATGGCATTTGTCACCGAATCTGCAGCCTTCGGCTGAGTTGAATTTGTTGCACAAACGTGTCTTGACAGCCGGAGGAGAAACACCATCTGGAAACGATGGAGGGGCGACAGGATTTCTAATGCCAGGGGAAATAGCAGGACTGTTCATCTGAGAAATTGCTTTGAATCCACCAGGAACATAATGTGCAAAATGACACCCCTCACCAAAAGGGCAACCAGAAGTGCTGCA

Coding sequence (CDS)

ATGGAGACGGAGAATCAACAGCCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATCAATTTCCTTCCCTCTCATCCTCCAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTACGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAGCCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGAAGGCTGCAAAAGTTGGCGCTCTACCAAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGCTGTCAACATGTACACTGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCGAGCAACAAGTTGAAACCAAATAAGAAACTCCAGAAGAAGCCATTGAAGAAGGGATCTCCAAAGAATGGCAAGGCAAAATGA

Protein sequence

METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK
Homology
[Close]
BLAST of Cp4.1LG04g11800 vs. Swiss-Prot
Match: RRS1_ARATH (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 400.6 bits (1028), Expect = 1.7e-110
Identity = 209/321 (65.11%), Postives = 257/321 (80.06%), Query Frame = 1 

Query: 2   ETENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTE 61
           E E +Q +Q+D+GNL+AFNP+H+FPS  SSR +LV E L +G +L Q IAN LFN PSTE
Sbjct: 4   EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63

Query: 62  DRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRR 121
             DGP+V+LPPP+T+LPREK +P+PKPPTKWE FA K+GI+ RKK+K+V+D+QT  +KRR
Sbjct: 64  TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123

Query: 122 HGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALP 181
           HGYDR ND+ ++PIIEAK +DEPGVDPFA R  +KK RV KQE+N+LQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183

Query: 182 SHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKY 241
           SHVQLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKKL GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243

Query: 242 RKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKS 301
            K+LPVV G G  + E+EQT  VL+++ SK+SHEILN+ KA+NMY VKKEKK+       
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------- 303

Query: 302 SSMSSNKLKPNKKLQKKPLKK 323
            S  S+KLKP K + KKP  K
Sbjct: 304 -SGRSDKLKPKKDITKKPANK 316

[Close]
BLAST of Cp4.1LG04g11800 vs. Swiss-Prot
Match: RRS1_MOUSE (Ribosome biogenesis regulatory protein homolog OS=Mus musculus GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-32
Identity = 113/324 (34.88%), Postives = 174/324 (53.70%), Query Frame = 1 

Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           + DLGNL+A   NP         S E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTVLRQAGPSPE---AELRALARDNTQLLINQLWRLPTERVEEAVV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE   + +P  D FA R   KK RV K E N+L+NL +A K+  +PS     
Sbjct: 153 RDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           +  L  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + E++   ++L  + SK     L++ +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATNKQMREEDQEEAAKRRKMSQKGKR 332

Query: 310 K---LKPNKKLQKKPLKKGSPKNG 329
           K     P+ K +  P  +G  + G
Sbjct: 333 KGGRQGPSGKRKGGPPGQGEKRKG 336

[Close]
BLAST of Cp4.1LG04g11800 vs. Swiss-Prot
Match: RRS1_BOVIN (Ribosome biogenesis regulatory protein homolog OS=Bos taurus GN=RRS1 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-32
Identity = 114/321 (35.51%), Postives = 173/321 (53.89%), Query Frame = 1 

Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           + DLGNL+A   NP         ++E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTGLRHAGPTQE---AELRALARDNTQLLINQLWQLPTERVEEALV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP PSTRLPREKP+P+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE     +P  D FA R   KK RV K E N+L+NL +A K+  LPS     
Sbjct: 153 RDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           A  +  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + ER+   ++L  + SK     ++I +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAERKSQLEMLRVMNSKKPQ--MDITRATNKQMREEDQEEAAKRRKMS--QKG 331

Query: 310 KLKPNKKLQKKPLKKGSPKNG 329
           K K  ++      K G+P  G
Sbjct: 333 KRKGGRQGPGSKRKGGTPSQG 331

[Close]
BLAST of Cp4.1LG04g11800 vs. Swiss-Prot
Match: RRS1_HUMAN (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-32
Identity = 115/324 (35.49%), Postives = 172/324 (53.09%), Query Frame = 1 

Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           Q DLGNL+A   NP         + E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  QFDLGNLLASDRNPPTGLRCAGPTPE---AELQALARDNTQLLINQLWQLPTERVEEAIV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE     +P  D FA R   KK RV K E N+L+NL +A K+  LPS     
Sbjct: 153 RDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           A  L  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + E++   ++L  + SK     L++ +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRKMSQKGKR 332

Query: 310 K---LKPNKKLQKKPLKKGSPKNG 329
           K     P  K +  P  +G  + G
Sbjct: 333 KGGRQGPGGKRKGGPPSQGGKRKG 336

[Close]
BLAST of Cp4.1LG04g11800 vs. Swiss-Prot
Match: RRS1_RAT (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-31
Identity = 113/324 (34.88%), Postives = 174/324 (53.70%), Query Frame = 1 

Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           + DLGNL+A   NP         S E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTVLRQAGPSPE---AELRALARDNTQLLVNQLWQLPTERVEEAVV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYKRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE   + +P  D FA R   KK RV K E N+L+NL +A K+  +PS     
Sbjct: 153 RDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           +  L  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + E++   ++L  + SK     L++ +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRKMS--QKG 332

Query: 310 KLKPNKKLQKKPLKKGSPKNGKAK 332
           K K  ++      K G P  G+ +
Sbjct: 333 KKKGGRQGPSGRRKGGPPSQGEKR 334

[Close]
BLAST of Cp4.1LG04g11800 vs. TrEMBL
Match: A0A0A0LZY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605610 PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 3.4e-158
Identity = 299/331 (90.33%), Postives = 314/331 (94.86%), Query Frame = 1 

Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLG+LMAFNPHHQFPSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMY VKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 332
           SSSMSS KLKPNKKLQKKPLKKGS K GKAK
Sbjct: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 329

[Close]
BLAST of Cp4.1LG04g11800 vs. TrEMBL
Match: W9SI58_9ROSA (Ribosome biogenesis regulatory-like protein OS=Morus notabilis GN=L484_014799 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 2.7e-139
Identity = 263/331 (79.46%), Postives = 296/331 (89.43%), Query Frame = 1 

Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           METE Q  FQIDLGNLMAF+P H FPS  SSRE+LV+ECL+KG EL Q I++ LFNLPST
Sbjct: 3   METETQSQFQIDLGNLMAFDPLHNFPSPPSSREELVNECLKKGTELVQAISDTLFNLPST 62

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           ED DGPLV+LPPP+TRLPREKPLPKPKPPTKWELFAK RGIKNRKKDKIVYD+QTG+WKR
Sbjct: 63  EDVDGPLVKLPPPATRLPREKPLPKPKPPTKWELFAKARGIKNRKKDKIVYDEQTGTWKR 122

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           R+GYD ANDE+ +PII+AK+TDEPG DPFA RRA+KK ++EKQE+N+ QNLK+AAKVGAL
Sbjct: 123 RYGYDHANDEDKVPIIDAKITDEPGEDPFAKRRADKKKKIEKQEKNRSQNLKEAAKVGAL 182

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITG+QA PKK +K+ELGNVAGMAATSTASGGKFDKKL GEKPAKH+GK
Sbjct: 183 PSHVQLAATALPITGSQAVPKKFSKEELGNVAGMAATSTASGGKFDKKLPGEKPAKHKGK 242

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEG G+ SQEREQTEKVLN+L SKNSHE+LN+NKAVNMY VKKEKK +N+ GK
Sbjct: 243 YRKFLPVVEGKGMVSQEREQTEKVLNKLFSKNSHEMLNVNKAVNMYNVKKEKKWKNKEGK 302

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 332
           SS  SS+KLKPNK L+KK L KGS K GKAK
Sbjct: 303 SSP-SSSKLKPNKTLKKKSLNKGSSKKGKAK 332

[Close]
BLAST of Cp4.1LG04g11800 vs. TrEMBL
Match: D7U817_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02730 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 4.4e-134
Identity = 254/325 (78.15%), Postives = 290/325 (89.23%), Query Frame = 1 

Query: 7   QPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGP 66
           Q  QIDLG+L+AF+P H FPS  SSRE+LV ECLQKG EL Q IA+ LFNLPSTED DGP
Sbjct: 4   QEHQIDLGHLLAFDPLHHFPSPPSSREELVKECLQKGTELVQSIADTLFNLPSTEDIDGP 63

Query: 67  LVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDR 126
           LV+LPPP+TRLPREK LPKPKPPTKWELFAK +GIKNRKKDKIVYD+QTG+WKRRHGYDR
Sbjct: 64  LVKLPPPTTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRHGYDR 123

Query: 127 ANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQL 186
            ND+E+IPIIEAKMTDE G DPFA RRA KK RVEKQ +N+LQNLK+AAKVGALPSH+QL
Sbjct: 124 VNDDEDIPIIEAKMTDEAGEDPFAKRRAEKKKRVEKQGKNRLQNLKQAAKVGALPSHIQL 183

Query: 187 AATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLP 246
           AATALPITGTQ APKK++K+EL +VA MAAT+TASGGKFDKKL GEKP KH+GKYRKFLP
Sbjct: 184 AATALPITGTQTAPKKVSKNELEDVASMAATATASGGKFDKKLPGEKPEKHKGKYRKFLP 243

Query: 247 VVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSS 306
           VVEGTGIGS E++QTEK+LN+LISKNSHEILN++KA+NMY VKKEKK++N++GK SS SS
Sbjct: 244 VVEGTGIGSLEKQQTEKILNKLISKNSHEILNVDKAINMYNVKKEKKRKNRQGKDSSTSS 303

Query: 307 NKLKPNKKLQKKPLKKGSPKNGKAK 332
            KLKP K+LQKK LKKG+ K GK+K
Sbjct: 304 -KLKPKKQLQKKSLKKGTSKKGKSK 327

[Close]
BLAST of Cp4.1LG04g11800 vs. TrEMBL
Match: F6I6B2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01120 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 1.7e-133
Identity = 256/326 (78.53%), Postives = 288/326 (88.34%), Query Frame = 1 

Query: 7   QPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGP 66
           Q  QIDLG+LMAF+P H FPS  +SRE+LV ECLQKG  L Q IA+ LFNLPSTED DGP
Sbjct: 7   QEHQIDLGHLMAFDPLHHFPSPPTSREELVKECLQKGTVLVQLIADALFNLPSTEDIDGP 66

Query: 67  LVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDR 126
           LV+LPPP TRLPREK LPKPKPPTKWELFAK +GIKNRKKDKIVYD+QTG+WKRRHGYDR
Sbjct: 67  LVKLPPPMTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRHGYDR 126

Query: 127 ANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQL 186
            ND+++IPIIEAKMTDEPG DPF  R+A KK RVEK E+N+LQNLK+AAKVGALPSH+QL
Sbjct: 127 VNDDKDIPIIEAKMTDEPGEDPFVKRQAEKKKRVEKHEKNRLQNLKQAAKVGALPSHIQL 186

Query: 187 AATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLP 246
           AATALPITGTQAAPKK +K+EL ++A MAA +TASGGKFDKKL GEKP KH+GKYRKFLP
Sbjct: 187 AATALPITGTQAAPKKASKNELQDIASMAAAATASGGKFDKKLVGEKPEKHKGKYRKFLP 246

Query: 247 VVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSS 306
           VVEGTGIGSQE++QTEKVLNRLISKNSHEILN++KA+NMY VKKEKK++NQRGK SS SS
Sbjct: 247 VVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRKNQRGKDSSTSS 306

Query: 307 NKLKPNKKLQKKPLKK-GSPKNGKAK 332
            KLKP K+LQKK LKK GS K GK+K
Sbjct: 307 -KLKPKKQLQKKSLKKGGSSKKGKSK 331

[Close]
BLAST of Cp4.1LG04g11800 vs. TrEMBL
Match: A0A0D2LUI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G041600 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.9e-133
Identity = 255/335 (76.12%), Postives = 294/335 (87.76%), Query Frame = 1 

Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQ+D+GNL AFNP H FPSL +SR++LV ECLQ+G +L Q +A+ LFNLPST
Sbjct: 1   MEKENQNPFQLDVGNLFAFNPFHNFPSLPTSRDELVKECLQEGTKLVQAVADSLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           ED DGPLV+LPPP+T+LPREK LPKPKPPTKWE FAKK+GIK RKKDK+V+D+QTG+WKR
Sbjct: 61  EDVDGPLVKLPPPTTKLPREKHLPKPKPPTKWEEFAKKKGIKKRKKDKVVWDEQTGAWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           R GYDR ND+++IPIIEAKMTDEPG DPFA R+ +KK RVEKQE+N+LQNLK+AAK+GAL
Sbjct: 121 RFGYDRVNDDKDIPIIEAKMTDEPGEDPFAKRQDDKKKRVEKQEKNRLQNLKQAAKLGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITGTQA PKK+TKDELGNVAGMAATSTASGGKFD+KL GEKPAK QGK
Sbjct: 181 PSHVQLAATALPITGTQAPPKKVTKDELGNVAGMAATSTASGGKFDRKLPGEKPAKKQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQR---NQ 300
           +RKFLPVVEG+GIGS+E+EQTE VLN+LISK+SHEILN++KAV MY VKKEKK R   NQ
Sbjct: 241 HRKFLPVVEGSGIGSREKEQTENVLNKLISKHSHEILNVDKAVTMYNVKKEKKARNRKNQ 300

Query: 301 RGKSSSMSSNKLKPNKKLQKKPLKK--GSPKNGKA 331
            G+SSS +SNKLKP K+L KK  KK  GS K GKA
Sbjct: 301 EGRSSS-TSNKLKPKKQLHKKGAKKGPGSSKKGKA 334

[Close]
BLAST of Cp4.1LG04g11800 vs. TAIR10
Match: AT2G37990.1 (AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein)

HSP 1 Score: 400.6 bits (1028), Expect = 9.4e-112
Identity = 209/321 (65.11%), Postives = 257/321 (80.06%), Query Frame = 1 

Query: 2   ETENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTE 61
           E E +Q +Q+D+GNL+AFNP+H+FPS  SSR +LV E L +G +L Q IAN LFN PSTE
Sbjct: 4   EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63

Query: 62  DRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRR 121
             DGP+V+LPPP+T+LPREK +P+PKPPTKWE FA K+GI+ RKK+K+V+D+QT  +KRR
Sbjct: 64  TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123

Query: 122 HGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALP 181
           HGYDR ND+ ++PIIEAK +DEPGVDPFA R  +KK RV KQE+N+LQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183

Query: 182 SHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKY 241
           SHVQLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKKL GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243

Query: 242 RKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKS 301
            K+LPVV G G  + E+EQT  VL+++ SK+SHEILN+ KA+NMY VKKEKK+       
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------- 303

Query: 302 SSMSSNKLKPNKKLQKKPLKK 323
            S  S+KLKP K + KKP  K
Sbjct: 304 -SGRSDKLKPKKDITKKPANK 316

[Close]
BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: gi|449462587|ref|XP_004149022.1| (PREDICTED: ribosome biogenesis regulatory protein homolog [Cucumis sativus])

HSP 1 Score: 565.8 bits (1457), Expect = 4.8e-158
Identity = 299/331 (90.33%), Postives = 314/331 (94.86%), Query Frame = 1 

Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLG+LMAFNPHHQFPSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMY VKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 332
           SSSMSS KLKPNKKLQKKPLKKGS K GKAK
Sbjct: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 329

[Close]
BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: gi|659100477|ref|XP_008451116.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis regulatory protein homolog [Cucumis melo])

HSP 1 Score: 543.5 bits (1399), Expect = 2.6e-151
Identity = 287/332 (86.45%), Postives = 308/332 (92.77%), Query Frame = 1 

Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLG+LMAFNPHHQFPS+  SRE+L+SECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSIPPSREELISECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRG-IKNRKKDKIVYDDQTGSWK 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+G +    KDK VYD+Q  +WK
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGQLLKTXKDKRVYDEQMHTWK 120

Query: 121 RRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGA 180
           RRHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGA
Sbjct: 121 RRHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGA 180

Query: 181 LPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQG 240
           LPSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQG
Sbjct: 181 LPSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQG 240

Query: 241 KYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRG 300
           KYRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMY VKKEKKQRNQ+G
Sbjct: 241 KYRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQQG 300

Query: 301 KSSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 332
           KSSS SS+KLK NKKLQKKPLKKGS K GKAK
Sbjct: 301 KSSS-SSSKLKANKKLQKKPLKKGSSKQGKAK 331

[Close]
BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: gi|703159488|ref|XP_010112262.1| (Ribosome biogenesis regulatory-like protein [Morus notabilis])

HSP 1 Score: 503.1 bits (1294), Expect = 3.8e-139
Identity = 263/331 (79.46%), Postives = 296/331 (89.43%), Query Frame = 1 

Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           METE Q  FQIDLGNLMAF+P H FPS  SSRE+LV+ECL+KG EL Q I++ LFNLPST
Sbjct: 3   METETQSQFQIDLGNLMAFDPLHNFPSPPSSREELVNECLKKGTELVQAISDTLFNLPST 62

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           ED DGPLV+LPPP+TRLPREKPLPKPKPPTKWELFAK RGIKNRKKDKIVYD+QTG+WKR
Sbjct: 63  EDVDGPLVKLPPPATRLPREKPLPKPKPPTKWELFAKARGIKNRKKDKIVYDEQTGTWKR 122

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           R+GYD ANDE+ +PII+AK+TDEPG DPFA RRA+KK ++EKQE+N+ QNLK+AAKVGAL
Sbjct: 123 RYGYDHANDEDKVPIIDAKITDEPGEDPFAKRRADKKKKIEKQEKNRSQNLKEAAKVGAL 182

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITG+QA PKK +K+ELGNVAGMAATSTASGGKFDKKL GEKPAKH+GK
Sbjct: 183 PSHVQLAATALPITGSQAVPKKFSKEELGNVAGMAATSTASGGKFDKKLPGEKPAKHKGK 242

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEG G+ SQEREQTEKVLN+L SKNSHE+LN+NKAVNMY VKKEKK +N+ GK
Sbjct: 243 YRKFLPVVEGKGMVSQEREQTEKVLNKLFSKNSHEMLNVNKAVNMYNVKKEKKWKNKEGK 302

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 332
           SS  SS+KLKPNK L+KK L KGS K GKAK
Sbjct: 303 SSP-SSSKLKPNKTLKKKSLNKGSSKKGKAK 332

[Close]
BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: gi|1009133334|ref|XP_015883845.1| (PREDICTED: ribosome biogenesis regulatory protein homolog [Ziziphus jujuba])

HSP 1 Score: 502.3 bits (1292), Expect = 6.5e-139
Identity = 264/332 (79.52%), Postives = 297/332 (89.46%), Query Frame = 1 

Query: 1   METENQQP-FQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPS 60
           METE QQ   Q+DLGNLMAFNPHH FPSL SSRE+LV ECL++G EL Q IA++LFNLP+
Sbjct: 1   METEQQQQQLQVDLGNLMAFNPHHHFPSLPSSRENLVKECLKQGTELVQAIADNLFNLPA 60

Query: 61  TEDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWK 120
           TED DGP+V+LPPP+TRLPREK +PKPKPPTKWELFAK RGIKNRKKDKI YD+QTG+WK
Sbjct: 61  TEDVDGPIVKLPPPTTRLPREKHIPKPKPPTKWELFAKARGIKNRKKDKIEYDEQTGTWK 120

Query: 121 RRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGA 180
           RR+GYD ANDE+N+PIIEAKMTDEPG DPFA RR+ KK  VEKQE+N+LQNLK+AAK GA
Sbjct: 121 RRYGYDHANDEDNVPIIEAKMTDEPGEDPFAKRRSEKKKHVEKQEKNRLQNLKQAAKFGA 180

Query: 181 LPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQG 240
           LPSHVQLAATALPITGTQA PKK++KDELGNVAGMAAT+TASGGKFDKKLAGEKPAKH  
Sbjct: 181 LPSHVQLAATALPITGTQAMPKKVSKDELGNVAGMAATATASGGKFDKKLAGEKPAKHSR 240

Query: 241 KYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRG 300
           KYRKFLPVVEGTGIG +E+EQT+KVLN+L+SKNSHEILN+NKAVNMY VKKEKK+RN+  
Sbjct: 241 KYRKFLPVVEGTGIGKEEKEQTDKVLNQLLSKNSHEILNVNKAVNMYNVKKEKKKRNREE 300

Query: 301 KSSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 332
           KSS+ SS KLKP K+  KKPLKKGS K GKAK
Sbjct: 301 KSSATSS-KLKPKKQF-KKPLKKGSSKKGKAK 330

[Close]
BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: gi|225453598|ref|XP_002264648.1| (PREDICTED: ribosome biogenesis regulatory protein homolog [Vitis vinifera])

HSP 1 Score: 485.7 bits (1249), Expect = 6.3e-134
Identity = 254/325 (78.15%), Postives = 290/325 (89.23%), Query Frame = 1 

Query: 7   QPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGP 66
           Q  QIDLG+L+AF+P H FPS  SSRE+LV ECLQKG EL Q IA+ LFNLPSTED DGP
Sbjct: 4   QEHQIDLGHLLAFDPLHHFPSPPSSREELVKECLQKGTELVQSIADTLFNLPSTEDIDGP 63

Query: 67  LVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDR 126
           LV+LPPP+TRLPREK LPKPKPPTKWELFAK +GIKNRKKDKIVYD+QTG+WKRRHGYDR
Sbjct: 64  LVKLPPPTTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRHGYDR 123

Query: 127 ANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQL 186
            ND+E+IPIIEAKMTDE G DPFA RRA KK RVEKQ +N+LQNLK+AAKVGALPSH+QL
Sbjct: 124 VNDDEDIPIIEAKMTDEAGEDPFAKRRAEKKKRVEKQGKNRLQNLKQAAKVGALPSHIQL 183

Query: 187 AATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLP 246
           AATALPITGTQ APKK++K+EL +VA MAAT+TASGGKFDKKL GEKP KH+GKYRKFLP
Sbjct: 184 AATALPITGTQTAPKKVSKNELEDVASMAATATASGGKFDKKLPGEKPEKHKGKYRKFLP 243

Query: 247 VVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSS 306
           VVEGTGIGS E++QTEK+LN+LISKNSHEILN++KA+NMY VKKEKK++N++GK SS SS
Sbjct: 244 VVEGTGIGSLEKQQTEKILNKLISKNSHEILNVDKAINMYNVKKEKKRKNRQGKDSSTSS 303

Query: 307 NKLKPNKKLQKKPLKKGSPKNGKAK 332
            KLKP K+LQKK LKKG+ K GK+K
Sbjct: 304 -KLKPKKQLQKKSLKKGTSKKGKSK 327

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g11800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRS1_ARATH1.7e-11065.11Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37... [more]
RRS1_MOUSE2.4e-3234.88Ribosome biogenesis regulatory protein homolog OS=Mus musculus GN=Rrs1 PE=1 SV=1[more]
RRS1_BOVIN2.4e-3235.51Ribosome biogenesis regulatory protein homolog OS=Bos taurus GN=RRS1 PE=2 SV=1[more]
RRS1_HUMAN3.1e-3235.49Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2[more]
RRS1_RAT1.2e-3134.88Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2... [more]
BLAST of Cp4.1LG04g11800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZY0_CUCSA3.4e-15890.33Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605610 PE=4 SV=1[more]
W9SI58_9ROSA2.7e-13979.46Ribosome biogenesis regulatory-like protein OS=Morus notabilis GN=L484_014799 PE... [more]
D7U817_VITVI4.4e-13478.15Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02730 PE=4 SV=... [more]
F6I6B2_VITVI1.7e-13378.53Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01120 PE=4 SV=... [more]
A0A0D2LUI7_GOSRA4.9e-13376.12Uncharacterized protein OS=Gossypium raimondii GN=B456_001G041600 PE=4 SV=1[more]
BLAST of Cp4.1LG04g11800 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37990.19.4e-11265.11 ribosome biogenesis regulatory protein (RRS1) family protein[more]
BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462587|ref|XP_004149022.1|4.8e-15890.33PREDICTED: ribosome biogenesis regulatory protein homolog [Cucumis sativus][more]
gi|659100477|ref|XP_008451116.1|2.6e-15186.45PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis regulatory protein homolog [... [more]
gi|703159488|ref|XP_010112262.1|3.8e-13979.46Ribosome biogenesis regulatory-like protein [Morus notabilis][more]
gi|1009133334|ref|XP_015883845.1|6.5e-13979.52PREDICTED: ribosome biogenesis regulatory protein homolog [Ziziphus jujuba][more]
gi|225453598|ref|XP_002264648.1|6.3e-13478.15PREDICTED: ribosome biogenesis regulatory protein homolog [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007023Ribosom_reg
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000338 protein deneddylation
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0009909 regulation of flower development
biological_process GO:0001510 RNA methylation
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g11800.1Cp4.1LG04g11800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007023Ribosomal biogenesis regulatory proteinPANTHERPTHR17602RIBOSOME BIOGENESIS REGULATORY PROTEINcoord: 4..330
score: 2.8E
IPR007023Ribosomal biogenesis regulatory proteinPFAMPF04939RRS1coord: 8..171
score: 5.4
NoneNo IPR availableunknownCoilCoilcoord: 151..171
scor