Cp4.1LG04g08670 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g08670
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 2607655 .. 2608209 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGTCCTTCATTTGACTTCAATTTCTTGGCATGGATATTTGAAGTTTCTGTATTTGGGTGCAATTAGTTCACAACTACTTAATGTGGTAATCGAAAGGATGGTCAATCATTGTGTTGAAAAGTGTTCTTCTACTCGGTTTAAATGATCTTATGTTAACTTTAGTAATATTGATGATCTTAAGTTTATGCCAGAAGAGTTATTCTATCCTTTCACAAATCTCAAGCTTCTTTTAATAGCAGATTGCAATCTAGGACAACATCCTATTAATGATATACTATGGAATGAGTTTCCGAGTCTCCGCGACATTTGTACAAAAAGTTGTCTAAATTTAATAACTCTACTAGAATGGATAGGCGATCTCACATCACTCTCAAACCTAACGATCTGCATTTGTCCAAAGCTCACTTCATTGTCGGAAGGGATTCACCACCTCCCCTCTTTGAAAGTATCGAGAATTCAGAAAAACTCCAAATTGATAGAGGTGCAAGGAAGGAAAAGGAGAAAATTGGCAAAAAAAATTTCTCATATTCCTCGTGTACGCATTTCATAA

mRNA sequence

ATGCCTTTTCTGTATTTGGGTGCAATTAGTTCACAACTACTTAATGTGGTAATCGAAAGGATGGTCAATCATTGTGTTGAAAAGTGTTCTTCTACTCGTAATATTGATGATCTTAAGTTTATGCCAGAAGAGTTATTCTATCCTTTCACAAATCTCAAGCTTCTTTTAATAGCAGATTGCAATCTAGGACAACATCCTATTAATGATATACTATGGAATGAGTTTCCGAGTCTCCGCGACATTTGTACAAAAAGTTGTCTAAATTTAATAACTCTACTAGAATGGATAGGCGATCTCACATCACTCTCAAACCTAACGATCTGCATTTGTCCAAAGCTCACTTCATTGTCGGAAGGGATTCACCACCTCCCCTCTTTGAAAGTATCGAGAATTCAGAAAAACTCCAAATTGATAGAGGTGCAAGGAAGGAAAAGGAGAAAATTGGCAAAAAAAATTTCTCATATTCCTCGTGTACGCATTTCATAA

Coding sequence (CDS)

ATGCCTTTTCTGTATTTGGGTGCAATTAGTTCACAACTACTTAATGTGGTAATCGAAAGGATGGTCAATCATTGTGTTGAAAAGTGTTCTTCTACTCGTAATATTGATGATCTTAAGTTTATGCCAGAAGAGTTATTCTATCCTTTCACAAATCTCAAGCTTCTTTTAATAGCAGATTGCAATCTAGGACAACATCCTATTAATGATATACTATGGAATGAGTTTCCGAGTCTCCGCGACATTTGTACAAAAAGTTGTCTAAATTTAATAACTCTACTAGAATGGATAGGCGATCTCACATCACTCTCAAACCTAACGATCTGCATTTGTCCAAAGCTCACTTCATTGTCGGAAGGGATTCACCACCTCCCCTCTTTGAAAGTATCGAGAATTCAGAAAAACTCCAAATTGATAGAGGTGCAAGGAAGGAAAAGGAGAAAATTGGCAAAAAAAATTTCTCATATTCCTCGTGTACGCATTTCATAA

Protein sequence

MPFLYLGAISSQLLNVVIERMVNHCVEKCSSTRNIDDLKFMPEELFYPFTNLKLLLIADCNLGQHPINDILWNEFPSLRDICTKSCLNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRRKLAKKISHIPRVRIS
BLAST of Cp4.1LG04g08670 vs. TrEMBL
Match: M0WU21_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1

Query: 31  STRNIDDLKFMPEELFYPFTNLKLLLIADC-NLGQHPINDILWNEFPSLRDICTKSCLNL 90
           S  ++ DL+ MPE L +  T+L++  + DC NL   P +        +LR +    C  L
Sbjct: 122 SLMSLTDLETMPEWLGH-LTSLQVFALKDCCNLTFLPGS---MKNLTALRVLMLLECKGL 181

Query: 91  ITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRRKLA 150
             L +WIG+L+SL  L I  CP +TSL E I +L +L+   I   S L+    R +R+ A
Sbjct: 182 YILPKWIGELSSLRELHIRDCPNITSLPESIRNLTTLEEMYISGCSSLVH---RSQREDA 241

Query: 151 KKISHIPRV 159
            K+SHIP+V
Sbjct: 242 YKVSHIPKV 243

BLAST of Cp4.1LG04g08670 vs. TrEMBL
Match: M0WU18_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1

Query: 31   STRNIDDLKFMPEELFYPFTNLKLLLIADC-NLGQHPINDILWNEFPSLRDICTKSCLNL 90
            S  ++ DL+ MPE L +  T+L++  + DC NL   P +        +LR +    C  L
Sbjct: 1287 SLMSLTDLETMPEWLGH-LTSLQVFALKDCCNLTFLPGS---MKNLTALRVLMLLECKGL 1346

Query: 91   ITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRRKLA 150
              L +WIG+L+SL  L I  CP +TSL E I +L +L+   I   S L+    R +R+ A
Sbjct: 1347 YILPKWIGELSSLRELHIRDCPNITSLPESIRNLTTLEEMYISGCSSLVH---RSQREDA 1406

Query: 151  KKISHIPRV 159
             K+SHIP+V
Sbjct: 1407 YKVSHIPKV 1408

BLAST of Cp4.1LG04g08670 vs. TrEMBL
Match: W5ACC7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-07
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 1

Query: 31   STRNIDDLKFMPEELFYPFTNLKLLLIADC-NLGQHPINDILWNEFPSLRDICTKSCLNL 90
            S  +++DL+ +P+ L +  T+L++L+I DC NL   P +        +LR +    C  L
Sbjct: 1184 SLMSLEDLEILPDWLRH-LTSLQVLVIKDCRNLRILPAS---MGNLTALRVLMLLECKGL 1243

Query: 91   ITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRRKLA 150
             TL +W+G L+SL  L I  CP +T   + I +L +L+   +  +S L+    R RR+ A
Sbjct: 1244 DTLPQWLGQLSSLRELHIRDCPNITCFPDSIQNLTALEELYLSGSSLLVR---RSRRENA 1303

Query: 151  KKISHIPRV 159
             K+SHI +V
Sbjct: 1304 YKVSHIRKV 1305

BLAST of Cp4.1LG04g08670 vs. TrEMBL
Match: U5FLP0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02320g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 1

Query: 18  IERMVNHCVEKCSSTRNI-----DDLKFMPEELFYPFTNLKLLLIADCN-LGQHPINDIL 77
           ++ + N  ++  S+ +++     D+L+ +PEE     T+L++L IADC  L   P+N + 
Sbjct: 350 LQSLSNKVLDNLSALKSLSIQWCDELESLPEEGLRNLTSLEVLHIADCGRLNSLPMNGLC 409

Query: 78  WNEFPSLRDICTKSCLNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRI 137
                SLR    + C    +L E +  LT+L  L +  CP+L SL + I HL SL    I
Sbjct: 410 G--LSSLRRFLIQGCNQFASLTEGVRHLTALEYLGLYRCPELNSLPDSIQHLTSLLSLVI 469

Query: 138 QKNSKLIEVQGRKRRKLAKKISHIPRVRIS 162
                L +   ++R K   KI+HIP + I+
Sbjct: 470 YDCPNLEKRCEKERGKDWPKIAHIPDIEIN 497

BLAST of Cp4.1LG04g08670 vs. TrEMBL
Match: U7DZ28_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0154s00250g PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 1

Query: 28   KCSSTRNIDDLKFMPEELFYPFTNLKLLLIADCN-LGQHPINDILWNEFPSLRDICTKSC 87
            K  S +  D+L+ +PEE     T+L++L IADC  L   P+N +      SLR    + C
Sbjct: 892  KSLSIQWCDELESLPEEGLRNLTSLEVLHIADCGRLNSLPMNGLCG--LSSLRRFLIQGC 951

Query: 88   LNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRR 147
                +L E +  LT+L  L +  CP+L SL + I HL SL    I     L +   ++R 
Sbjct: 952  NQFASLTEGVRHLTALEYLGLYRCPELNSLPDSIQHLTSLLSLVIYDCPNLEKRCEKERG 1011

Query: 148  KLAKKISHIPRVRIS 162
            K   KI+HIP + I+
Sbjct: 1012 KDWPKIAHIPDIEIN 1024

BLAST of Cp4.1LG04g08670 vs. NCBI nr
Match: gi|658038786|ref|XP_008354961.1| (PREDICTED: putative disease resistance protein RGA4 [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 52/135 (38.52%), Postives = 66/135 (48.89%), Query Frame = 1

Query: 30   SSTRNIDDLKFMPEELFYPFTNLKLLLIADCN---LGQHPINDILWNEFPSLRDICTKSC 89
            S  R +  +   P       T L  L I  CN   L +   + + W    SLR +C  SC
Sbjct: 993  SRCRRLRGIPLSPSPSVQHLTALDCLEIKRCNELDLWKEDESFLQWKSLKSLRTLCIYSC 1052

Query: 90   LNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRR 149
              LI L E IG+LTSLS L I  CP L SL EG+  L SL+  RI   S L+  +  K R
Sbjct: 1053 DRLIKLPEGIGNLTSLSELVIGFCPNLASLPEGMCRLTSLETLRIFYCSSLLRPRCEKER 1112

Query: 150  -KLAKKISHIPRVRI 161
             +   KI+HIP + I
Sbjct: 1113 GEDWSKIAHIPNISI 1127

BLAST of Cp4.1LG04g08670 vs. NCBI nr
Match: gi|566210868|ref|XP_006372510.1| (hypothetical protein POPTR_0017s02320g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 1

Query: 18  IERMVNHCVEKCSSTRNI-----DDLKFMPEELFYPFTNLKLLLIADCN-LGQHPINDIL 77
           ++ + N  ++  S+ +++     D+L+ +PEE     T+L++L IADC  L   P+N + 
Sbjct: 350 LQSLSNKVLDNLSALKSLSIQWCDELESLPEEGLRNLTSLEVLHIADCGRLNSLPMNGLC 409

Query: 78  WNEFPSLRDICTKSCLNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRI 137
                SLR    + C    +L E +  LT+L  L +  CP+L SL + I HL SL    I
Sbjct: 410 G--LSSLRRFLIQGCNQFASLTEGVRHLTALEYLGLYRCPELNSLPDSIQHLTSLLSLVI 469

Query: 138 QKNSKLIEVQGRKRRKLAKKISHIPRVRIS 162
                L +   ++R K   KI+HIP + I+
Sbjct: 470 YDCPNLEKRCEKERGKDWPKIAHIPDIEIN 497

BLAST of Cp4.1LG04g08670 vs. NCBI nr
Match: gi|566257452|ref|XP_006388570.1| (hypothetical protein POPTR_0154s00250g [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 1

Query: 28   KCSSTRNIDDLKFMPEELFYPFTNLKLLLIADCN-LGQHPINDILWNEFPSLRDICTKSC 87
            K  S +  D+L+ +PEE     T+L++L IADC  L   P+N +      SLR    + C
Sbjct: 892  KSLSIQWCDELESLPEEGLRNLTSLEVLHIADCGRLNSLPMNGLCG--LSSLRRFLIQGC 951

Query: 88   LNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQKNSKLIEVQGRKRR 147
                +L E +  LT+L  L +  CP+L SL + I HL SL    I     L +   ++R 
Sbjct: 952  NQFASLTEGVRHLTALEYLGLYRCPELNSLPDSIQHLTSLLSLVIYDCPNLEKRCEKERG 1011

Query: 148  KLAKKISHIPRVRIS 162
            K   KI+HIP + I+
Sbjct: 1012 KDWPKIAHIPDIEIN 1024

BLAST of Cp4.1LG04g08670 vs. NCBI nr
Match: gi|743887885|ref|XP_011038279.1| (PREDICTED: putative disease resistance protein RGA1 [Populus euphratica])

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 1

Query: 18   IERMVNHCVEKCSSTRNI-----DDLKFMPEELFYPFTNLKLLLIADCN-LGQHPINDIL 77
            ++ + N  ++  S+ +++     D+L+ +PEE     T+L++L IADC  L   P+N + 
Sbjct: 931  LQSLSNKVLDNLSALKSLSIQWCDELESLPEEGLRNLTSLEVLHIADCGRLNSLPMNGLC 990

Query: 78   WNEFPSLRDICTKSCLNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRI 137
                 SLR    + C     L E +  LT+L  L +  CP+L SL + I HL SL    I
Sbjct: 991  G--LSSLRRFVIQGCNQFAYLTEGVRHLTALEYLGLYRCPELKSLPDSIQHLTSLLSLVI 1050

Query: 138  QKNSKLIEVQGRKRRKLAKKISHIPRVRIS 162
                 L +   ++R K   KI+HIP + I+
Sbjct: 1051 YDCPNLEKRCEKERGKDWPKIAHIPDIEIN 1078

BLAST of Cp4.1LG04g08670 vs. NCBI nr
Match: gi|694384241|ref|XP_009368038.1| (PREDICTED: disease resistance protein RGA2-like [Pyrus x bretschneideri])

HSP 1 Score: 59.7 bits (143), Expect = 5.4e-06
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 1

Query: 35   IDDLKFMPEELFYPFTNLKLLLIADC-NLGQHPIN-------DILWNE------------ 94
            I+DL+F+P E     T+L++L I DC NL   P           LW E            
Sbjct: 951  IEDLEFIPSEGMGNLTSLQVLAIDDCPNLAALPEGIANLTSLQSLWIENCPNLAALPEGI 1010

Query: 95   --FPSLRDICTKSCLNLITLLEWIGDLTSLSNLTICICPKLTSLSEGIHHLPSLKVSRIQ 133
                SL+ +  ++C NL  L E I +LTSL +L I +CP L +L EGI +L SL+  RI+
Sbjct: 1011 ANLTSLQSLWIENCPNLAALPEGIANLTSLQSLGIEVCPNLAALPEGIANLTSLQSLRIE 1070

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M0WU21_HORVD1.2e-0737.21Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1[more]
M0WU18_HORVD1.2e-0737.21Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1[more]
W5ACC7_WHEAT5.9e-0734.11Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
U5FLP0_POPTR1.0e-0631.33Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02320g PE=4 SV=1[more]
U7DZ28_POPTR1.3e-0634.81Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0154s00250g PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|658038786|ref|XP_008354961.1|1.8e-0938.52PREDICTED: putative disease resistance protein RGA4 [Malus domestica][more]
gi|566210868|ref|XP_006372510.1|1.4e-0631.33hypothetical protein POPTR_0017s02320g [Populus trichocarpa][more]
gi|566257452|ref|XP_006388570.1|1.9e-0634.81hypothetical protein POPTR_0154s00250g [Populus trichocarpa][more]
gi|743887885|ref|XP_011038279.1|4.2e-0631.33PREDICTED: putative disease resistance protein RGA1 [Populus euphratica][more]
gi|694384241|ref|XP_009368038.1|5.4e-0636.67PREDICTED: disease resistance protein RGA2-like [Pyrus x bretschneideri][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08670.1Cp4.1LG04g08670.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None