Cp4.1LG04g08590 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g08590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein of unknown function (DUF3511)
Location	Cp4.1LG04 : 2564977 .. 2565255 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGGGCGACGGCGCTCGGCGGCAGCGGCGGGTGGTCGGAGCTCCGGCTTCGTGGGGAGTATGGAGACGATAAAAGAAAGGAGATCTGGGAAGCAACGAGTGGTGGAGGCAAAGAAATCGGTGGAGAAATGGTGGAAAGGTTCAGAGACGAAGAGGAAGCGGCGAGTGGCCAAATACAAATTTTACGCCGTGGAAGGCAAACTGAAGCGTTCCATTACCAAAGGCTTCCAATGGATCAAGAAAAGGTGCGCCAAAATCATCTATGGATTTTGA

mRNA sequence

ATGGAGGCGGGGCGACGGCGCTCGGCGGCAGCGGCGGGTGGTCGGAGCTCCGGCTTCGTGGGGAGTATGGAGACGATAAAAGAAAGGAGATCTGGGAAGCAACGAGTGGTGGAGGCAAAGAAATCGGTGGAGAAATGGTGGAAAGGTTCAGAGACGAAGAGGAAGCGGCGAGTGGCCAAATACAAATTTTACGCCGTGGAAGGCAAACTGAAGCGTTCCATTACCAAAGGCTTCCAATGGATCAAGAAAAGGTGCGCCAAAATCATCTATGGATTTTGA

Coding sequence (CDS)

ATGGAGGCGGGGCGACGGCGCTCGGCGGCAGCGGCGGGTGGTCGGAGCTCCGGCTTCGTGGGGAGTATGGAGACGATAAAAGAAAGGAGATCTGGGAAGCAACGAGTGGTGGAGGCAAAGAAATCGGTGGAGAAATGGTGGAAAGGTTCAGAGACGAAGAGGAAGCGGCGAGTGGCCAAATACAAATTTTACGCCGTGGAAGGCAAACTGAAGCGTTCCATTACCAAAGGCTTCCAATGGATCAAGAAAAGGTGCGCCAAAATCATCTATGGATTTTGA

Protein sequence

MEAGRRRSAAAAGGRSSGFVGSMETIKERRSGKQRVVEAKKSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF

Homology

[Close]

BLAST of Cp4.1LG04g08590 vs. TrEMBL
Match: A0A072U413_MEDTR (DUF3511 domain protein OS=Medicago truncatula GN=MTR_7g112020 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 15  RSSGFVGSMETIKERRSGKQRVVEAKKSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSI 74
           R    V + ET++ER      VV+ KKS+  WW   E KRKRRVA+YKFY  EGKLKRS+
Sbjct: 51  RERSVVKNYETLRERS-----VVKKKKSMS-WWNDPERKRKRRVARYKFYGTEGKLKRSL 110

Query: 75  TKGFQWIKKRCAKIIYGF 93
            KGFQW+K +C KI   F
Sbjct: 111 KKGFQWLKVKCIKISASF 122

[Close]

BLAST of Cp4.1LG04g08590 vs. TrEMBL
Match: B9RFH1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-11
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 46 WWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
          WW   ETKRK+RVA+YKFYAVEGK+K SI KGF+W KK C++I++GF
Sbjct: 49 WWNAPETKRKKRVAQYKFYAVEGKVKISIKKGFRWFKKTCSRIVHGF 95

[Close]

BLAST of Cp4.1LG04g08590 vs. TrEMBL
Match: M4FHE8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 41  KSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYG 92
           K+++ WW   E KRKRRVAKYK Y+ EGK+K+S+ K ++WIK +CAKII+G
Sbjct: 73  KTLKGWWNDPEIKRKRRVAKYKLYSAEGKVKKSLKKSYKWIKIQCAKIIHG 123

[Close]

BLAST of Cp4.1LG04g08590 vs. TrEMBL
Match: A0A078G1D4_BRANA (BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 41  KSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYG 92
           K+++ WW   E KRKRRVAKYK Y+ EGK+K+S+ K ++WIK +CAKII+G
Sbjct: 73  KTLKGWWNDPEIKRKRRVAKYKLYSAEGKVKKSLKKSYKWIKIQCAKIIHG 123

[Close]

BLAST of Cp4.1LG04g08590 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-09
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 38  EAKKSVEK--WWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
           E  KS  K  WWK  E +R++RVAKYK Y VEGK+KRSI KG +WIK +C++II GF
Sbjct: 53  EPSKSCMKKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of Cp4.1LG04g08590 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 46  WWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYG 92
           WW   E KRKRRVAKYK Y+ EGK+K ++ K ++WIK +C+KII+G
Sbjct: 78  WWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of Cp4.1LG04g08590 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1


Query: 50  SETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYG 92
           +ETKRK+R+A YK YA+EGK+K ++ KGF WIK R + II+G
Sbjct: 69  AETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Cp4.1LG04g08590 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-08
Identity = 22/43 (51.16%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 50  SETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
           +E KRK+R+A+YK Y VEGK+K ++  GF+WIK +C +I++ F
Sbjct: 68  AEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of Cp4.1LG04g08590 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 37  VEAKKSV--EKWW--KGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
           V+ +KS+   K W     E +RK+RVA YK Y VEGK+K S    F+W+K+R  +++YG+
Sbjct: 45  VKKEKSIARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of Cp4.1LG04g08590 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 27  KERRSGKQRVVEAKKSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCA 86
           K +RS K      KK   K    +E +RK+RVA Y  Y VEG++K S+ K F+W K+ C+
Sbjct: 66  KSKRSNK-----VKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCS 125

Query: 87  KIIYG 92
             +YG
Sbjct: 126 NAVYG 125

[Close]

BLAST of Cp4.1LG04g08590 vs. NCBI nr
Match: gi|922347079|ref|XP_013450451.1| (DUF3511 domain protein [Medicago truncatula])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 15  RSSGFVGSMETIKERRSGKQRVVEAKKSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSI 74
           R    V + ET++ER      VV+ KKS+  WW   E KRKRRVA+YKFY  EGKLKRS+
Sbjct: 51  RERSVVKNYETLRERS-----VVKKKKSMS-WWNDPERKRKRRVARYKFYGTEGKLKRSL 110

Query: 75  TKGFQWIKKRCAKIIYGF 93
            KGFQW+K +C KI   F
Sbjct: 111 KKGFQWLKVKCIKISASF 122

[Close]

BLAST of Cp4.1LG04g08590 vs. NCBI nr
Match: gi|223548451|gb|EEF49942.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-11
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 46 WWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
          WW   ETKRK+RVA+YKFYAVEGK+K SI KGF+W KK C++I++GF
Sbjct: 49 WWNAPETKRKKRVAQYKFYAVEGKVKISIKKGFRWFKKTCSRIVHGF 95

[Close]

BLAST of Cp4.1LG04g08590 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 38  EAKKSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
           E  K  + WWK  E KR++RVAKYK YAVEGK+K SI KGF+WIK +C++II GF
Sbjct: 53  EPSKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of Cp4.1LG04g08590 vs. NCBI nr
Match: gi|729365021|ref|XP_010546758.1| (PREDICTED: uncharacterized protein LOC104818741 [Tarenaya hassleriana])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 22  SMETIKERRSGKQRVVEAKKSVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWI 81
           S+ +IK++RS          S++ WW   E KRKRRVAKYKFY+ EGK+K ++ +G++WI
Sbjct: 64  SLSSIKQKRSSHST------SIKGWWNDPEAKRKRRVAKYKFYSAEGKVKTTLKRGYRWI 123

Query: 82  KKRCAKIIY 91
           K +C+KII+
Sbjct: 124 KNQCSKIIH 126

[Close]

BLAST of Cp4.1LG04g08590 vs. NCBI nr
Match: gi|659082109|ref|XP_008441676.1| (PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 42  SVEKWWKGSETKRKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93
           +V+ WWK SE KR+RRVAKYK Y VEG++K SI KG  W K RC +II GF
Sbjct: 62  TVKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g08590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072U413_MEDTR	1.7e-11	53.85	DUF3511 domain protein OS=Medicago truncatula GN=MTR_7g112020 PE=4 SV=1	[more]
B9RFH1_RICCO	3.8e-11	68.09	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1	[more]
M4FHE8_BRARP	3.6e-09	58.82	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078G1D4_BRANA	3.6e-09	58.82	BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1	[more]
A0A0A0L7N5_CUCSA	6.1e-09	59.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g08590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	5.8e-11	58.70	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.6e-08	59.52	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	2.7e-08	51.16	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	2.5e-06	43.33	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	5.6e-06	41.54	Protein of unknown function (DUF3511)	[more]

BLAST of Cp4.1LG04g08590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922347079\|ref\|XP_013450451.1\|	2.5e-11	53.85	DUF3511 domain protein [Medicago truncatula]	[more]
gi\|223548451\|gb\|EEF49942.1\|	5.5e-11	68.09	conserved hypothetical protein [Ricinus communis]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	3.6e-10	61.82	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|729365021\|ref\|XP_010546758.1\|	1.8e-09	47.83	PREDICTED: uncharacterized protein LOC104818741 [Tarenaya hassleriana]	[more]
gi\|659082109\|ref\|XP_008441676.1\|	1.8e-09	62.75	PREDICTED: uncharacterized protein LOC103485754 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g08590.1	Cp4.1LG04g08590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 49..91 score: 4.7
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 22..92 score: 8.2
None	No IPR available	PANTHER	PTHR33193:SF3	SUBFAMILY NOT NAMED	coord: 22..92 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g08590	CmaCh11G012300	Cucurbita maxima (Rimu)	cmacpeB150

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g08590	Cucurbita pepo (Zucchini)	cpecpeB368
Cp4.1LG04g08590	Cucumber (Gy14) v1	cgycpeB0052
Cp4.1LG04g08590	Cucurbita maxima (Rimu)	cmacpeB091
Cp4.1LG04g08590	Cucurbita maxima (Rimu)	cmacpeB097
Cp4.1LG04g08590	Cucurbita moschata (Rifu)	cmocpeB067
Cp4.1LG04g08590	Cucurbita moschata (Rifu)	cmocpeB073
Cp4.1LG04g08590	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g08590	Wild cucumber (PI 183967)	cpecpiB654
Cp4.1LG04g08590	Wild cucumber (PI 183967)	cpecpiB664
Cp4.1LG04g08590	Cucumber (Chinese Long) v2	cpecuB651
Cp4.1LG04g08590	Cucumber (Chinese Long) v2	cpecuB661
Cp4.1LG04g08590	Bottle gourd (USVL1VR-Ls)	cpelsiB560
Cp4.1LG04g08590	Bottle gourd (USVL1VR-Ls)	cpelsiB570
Cp4.1LG04g08590	Watermelon (Charleston Gray)	cpewcgB601
Cp4.1LG04g08590	Watermelon (Charleston Gray)	cpewcgB604
Cp4.1LG04g08590	Watermelon (97103) v1	cpewmB645
Cp4.1LG04g08590	Watermelon (97103) v1	cpewmB648
Cp4.1LG04g08590	Melon (DHL92) v3.5.1	cpemeB618
Cp4.1LG04g08590	Cucumber (Gy14) v2	cgybcpeB120
Cp4.1LG04g08590	Cucumber (Gy14) v2	cgybcpeB134
Cp4.1LG04g08590	Melon (DHL92) v3.6.1	cpemedB730
Cp4.1LG04g08590	Melon (DHL92) v3.6.1	cpemedB745
Cp4.1LG04g08590	Cucumber (Chinese Long) v3	cpecucB0807
Cp4.1LG04g08590	Cucumber (Chinese Long) v3	cpecucB0821
Cp4.1LG04g08590	Cucumber (Chinese Long) v3	cpecucB0824
Cp4.1LG04g08590	Wax gourd	cpewgoB0905