Cp4.1LG04g08360 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g08360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	cytochrome c biogenesis protein family
Location	Cp4.1LG04 : 3131280 .. 3136969 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTAGGCATGTCTAACAAGTTTAAAATAAAAAACTATGGAGCAGAAAAAATATCTTGGCGAGGATAAAGCATGAGGTATGGTCGTTATTAACGCTCGGGGGGCAAGAAAGTGGAAACCCACTTCATAATTTCTGCAACAATGGAGGGATTGATCCTTCACAATCCAAACCCATATTTATCCAAAACCCCTTTTCTTCATTCTTCCTTCAGGCCTCAAATCACTCCAAATCTCTGCTGCAGAACCCTCTCTTTCAGCGTCACTTGTAAGGTGAAGGCATCGCAGGACAAGAAGCCCAAGAATGTCAGCAACAAGATTGTGCTCTCTGAAGCAGCGCCGCCGCTTGCGGAGGAGAGCGATGACAATAATGGAAACAACACTGAAGCCGAAGTCAAGCCTGGAAATGGGAGTGGTTTGTTGATGAAGCTTGTGAAGAGATTGCCGAAGAGGATTTTGGGGGCTTTGTCTAATTTGCCTTTGGCTATTGGAGAAATGTTCACCATCGCTGCTCTCATGGCTCTTGGTATGACCTATTTTTGTTGGCTATATCTCTCTGTATTCCGTTTACTATCTGGATTGAATAAACCGAAGATATAGAAAAAGAAAAAGTACAGTAATCTACTTCCTTCTAGTTTCAAATGATCTTATATTTGTTAGGAATCACGGACTCTCCACAATGGTATGATATTGTCCACTTTAGGCATAAGCTCTAAGTGGTTTGCTTTTGGTTTCCCCAAAAGACCTTATACCAATGGAGATGTATTCTTTACTTATAAACCCAGGATCATTCTCTAAATTAGCCAAGGTAGGACCCCTCCCAACAATCCTCTCCTCAAACAAAGTACACCATAGAGCCTCCCTTGAAGTCTATGTAGCCTTCGAACAACCTCCCCTTAATCGACGCTCGACTCCTTTCTTTGGAACCCTCAAACAAAGTACACCCTTTGTTCGACACATGAGTCACTTTTGACTACACCTTCGAGGCTAGCGATTTCTTTGTTCGACACTTGAGGATTCCATTAACATGGCTAAATGAAGGGCATGACTCTAATACCATGTTAGGAATCACGAGTCTACACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTTGGTTTTTCCAAAAGGCCTCATACCAATGAAAATATGATAAATCCATGATCATTCCTTAAATTAGTGAACGTGGGATTTCCTCCCAACAATTCTCAATAATATCGATGAACTTGTTGCGTTTAGAAAGCCCTTGGCTGCAACAGCTGTTGGACATGTATAAATGATGGCTTATTACTGAAAAATCAATCTGAGTTCATCGTGTTTAGCATTCATTTGCAGGTACTTTCATTGATCAGGGAGAGGCCCCTGATTTTTATTTCCAGAAGTACCCTGAAGATAATCCTATGTGGGGATTCTTCACTTGGAGATGGATTCTCACACTTGGGTTTGATCATATGTACACATCTACCATTTTTCTAGCCATGTTATCTCTTCTTGGGCTCTCACTCATGGCATGCACTTACACAACTCAGATTCCTCTTGTTAAGGTTGCAAGAAGGTTACAACACTCTCCCTCTTTCTCTTTCTTGACAGACACATTCATCTTTCTACCTTTTTTGTTATGAACATTCAAATTTTGTATGCAGATGGAACTTTTTGCAGTCCGGTGATGCTATTAGGAAGCTGGAATGTTCTGAAATTTTACCCAGAGCATCAGTCCAAGATTTGGGGGTTGTTTTAATGGGAGCAGGATATGAGGTTGTAACTCAATGTGGATTCTTGCTTCTTATATGATTATACTATTTTATGTACAGTACATAGTACATAGAACATCTAATGTTCTAACGGCCCAGGTCCACTGCTAGTAGATATTGTTCTATTTGGGCTTTTCCTTTCAAGCTTCCCCTCAAGGTTTTTGAAACGTTTCTGCTAGGGAAAAGTTCCACACCCTTAGTGTTTCAATCTCCTCCCCAACTAATGTGGGATCTTACAATCCACCCCCTTCGAAGCCCCGCGTCCTCGCTGGCACTCGTTCCTTTCTCCAATCGATGTGGGACCCCCATCCAATCCACCCCCTTTGGGGCCCAACGTTTTTGCTAGCACATAGCCTCATGTCCACCCCTTCGGGGCTCAGCCTACCCGCTGGCACATCGCCCGGTGTCTGGCTTTGATACCATTTGTAATGGCTCGGTCCACCGCTAGCAAATATTGTCCTCTTTGGAGTTTCCCTTTCGGGCTTTCCCTCAAGGTTATTAAAACACGTCTGCTAGGCAAAGGTTTCCACCCTTATAAAAGGTCGTTCTCCTCCCCAATCGATGTGGGATATATTACATAACATGCATGTGCTTTTTTTTTTTACTTGAAATCATGGAAAGCAACTTAATCAGCATCAAACTCAGATCTTGGTCATGCTAATTTCAGTGTCTAAATTAAATCAGAAATAGATTATACCATACAAGCTAAATATGGTCTCTAGACACTACTTCTTATAGCAAGCTTCTTGTCTTCCTGTTGGTAGCTCCCCAAGTGTGTAAGCTGAAAGTGTAGTTCACTAAATGATATCAATCATCTATTCTGCAGGTATTTATTAAAGGACCAACTTTATATGCTTTCAAGGGATTGGCTGGACGATTTGCGCCTATTGGTGTACATTTGGCCATGCTTTTGATTATGGGTGGTGCAACTCTCAGTGCAGCTGGGAGCTTCAGAGGTTCTGTTACAGTTCCTCAGGGACTGAATTTTGTAGTTGGAGATGTTCTGAACCCGAGCGGGTTTCTGTCCAAGCCAACTGAAGCTTTCAATACTGAAGTTCATGTCAACAACTTCTACATGGATTACTATGACAGTGGAGAGGTATGTCTGAATGAAGAAACCAATAATAACTATAAAACCAGTGGTAGAGTTAATACTGTGTTAGGAATCACGACTCTCCACGATGGTATGATATTGTCCACTTTGAGCTTAAGCTCTTATGCTTGCTTTGGGTTTCCCCAAAAGGCCTCGTACCAATGGAGATGTATTCCTTGCTTATAAAATCCATGATCATTCCCTAAATTAGTTGATGTAGGACTCCCTCCCAACAATCTTCAACATCGTGGTATAAACTAGCATGGGTTGGTCTTGTGATCAATAAGAATTAATGTAAGTAATAAAGGGTTAGCGGGAATGAGTTCAAGTTACGGGGTCCAGCTACTGTAGGATCAAATATTGTAGGGTCAAGTAGTTGTCCTATGAGAATAGTCGAGTTACGTGAAAATTTACCTAGACAACTGATTTTGCAGGTGAAACAGTTTCATAGTGATCTTTCTTTATTTGATCTTAATGGGAAAGAGGTGATGAGGAAGACAATCAGTGTAAATAATCCTTTACGGTATGGAGGTTTTACAATTTACCAAACTGATTGGGGATTTTCAGCTCTGCAAATACTCAAGAATGATGAAGGACCTTTTAACTTGGCTGTGGCACCTCTTAAGATCAATGGAGACAAGAAGCTTTATGGGACTTTCTTACCCGTTGGAGATGTCGATTCACCTGATGTGAAGGGAATGTATGTCGTTTCTTTTTGTACGTTTATCGTTATCTAATACTTCTTATTCGGGTATGTTTGGAAGTAATTTTGGAACGGTTTAAACCACTTTTGTCGAGTTAAAAATCACTCCTAAACATGCATTTAGTCATATATAAGTCGCGTTTTAAAGTATAAAGTCAAACATTGAAATCATTTTGAATGATTAAATGCGTGTTTGGAGTAATTTTCGGCGTGGCAAAAATGATTTTAAACATTTTAAAATCTCTCCCAAACATGCCCTATATCTACAAGGGAAAGACCAGTTATATTGTGAGATCCCAAATCGGTTGGAGAAGGGAACAAAGCATTCCTTATAAGGGTGTGGAAACCTCCCTCTAGGAGATGTGTTTTAAAACTATGAGGGTGATGGTGATACATAACGGATCAAAGCAGACAATATCTACTAGCAATGGGGTTGAGCTGTCAAAAATGGTATTAGAACCAGACACCGAGCGGTGTGCCAGCAAGGACGTTGGGCCCTCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTTCCTATTAGGTGCATTTTAAAACCATGAAGCTGACGGCGATACGTGATGGGCCAAAACGAAAACTATCTTCTAGCGGTGGGCTTGAGCGGTTATATATATATACATGTCAAATTGAGTATCCTTTATGCATTTGGAGGCCATGGGGTCGGCATCTTGGTTCATACTACATCTATATACATAAGGATGTAGTTTTTTGTGGCTATCCTTGTTACTTGTGGATGGTATTCTCATATTTTATATTAATGATGTAATTTCAGATCAATGCTTGCTCGTGATCTGCAATCCATTGTCCTGTATGATCAGGAAGGGAAGTTTGTCGGGGTTCGACGTCCAAGCTCTAAGCTTCCAATCGATATCGACGGTATGAAAATTGAAATACTTGATGCAATTGGCAGCACTGGGCTGGAGTTGAAGGTAACGACTCGGAAACGTTCACTAGTTTTTAGCTGGTGTGTCAAAACTGGATTCTAAACTGTCATTGATATTTGCCTATTTATCTCCAGACTGACCCAGGAGTGCCTGTTGTTTATGCTGGATTTGGTGCTCTAATGCTCACAACATGTATCAGTTTTCTCTCTCATTCACAGGTAAATATGCTTTTCTTCAACCTATTATTAATGCTCAATGCTAGAAAAAGATAACATGGTGTACTTACCATTTCTTTGATTGAAAGATATGGGCCATACAAGACGGAACAGTGGTGATCGTCGGAGGAAAGACGAACCGTGCAAAGGTCGAATTTCCAGAGGAGATTGACAGTTTACTCGATCGTGTTCCAGAAATCATCGAACCATCTCACAATCAGTTCAATAACAATGATGCCTAGTTACTAAGACAAAAATGGAACAAGAGAGAAACACAGTGTCCAACTACAAAATTTTGGCCTGAGATCACAGTTGGCTGTCTTCTTTCTTACATATACATATAGAGGACGGTTTTACCAATTTATAATTCTTTCATCACCGCCATGTTCCAAGTCAAATAAATTTTGTATATAATGTAACATAGGTAGCCATGTACGCCATTTATTATAAGAAAATATCGCTAATTTGAGGGTGAATAATCGACTCGAAAGTCCAAACAATACAACTGCAGGTACGATCCAACGGTTTTCAAGGTCGACATACTTGATGTACTCATTACTATGTAATTCATTTCTGTGAGGACTAAGATCTTTACTGCACAACATTACTATTTTGATACAAGAGGGTATATGATTGATGAAGGGAAGGTATCACCTTTAGTTACACTTACGATCATGCAACTCTTGTCTCTAACAAGTCAATTTGAACTACTAACCTATAAATTTATGCAACCTGCAATGCTTCTTCACGCTTAATGTCGAAGACTTTGACAAGAGCATCTTCGACAACCTAGTCAAACGCGTATGACATGTTATGGTTATAAATCTATTGCAGATCAAATATGTACCAGCAAGCATATAAGCCGAAGTGTATGGCTAACCTTATCGGGGGTCGAGGCACCGGATGTAACACCGATTGTGATAGGACCCTTGGGTAGCCAATTCTCCTTCTCAACTAACTCCCCAT

mRNA sequence

AGAATTAGGCATGTCTAACAAGTTTAAAATAAAAAACTATGGAGCAGAAAAAATATCTTGGCGAGGATAAAGCATGAGGTATGGTCGTTATTAACGCTCGGGGGGCAAGAAAGTGGAAACCCACTTCATAATTTCTGCAACAATGGAGGGATTGATCCTTCACAATCCAAACCCATATTTATCCAAAACCCCTTTTCTTCATTCTTCCTTCAGGCCTCAAATCACTCCAAATCTCTGCTGCAGAACCCTCTCTTTCAGCGTCACTTGTAAGGTGAAGGCATCGCAGGACAAGAAGCCCAAGAATGTCAGCAACAAGATTGTGCTCTCTGAAGCAGCGCCGCCGCTTGCGGAGGAGAGCGATGACAATAATGGAAACAACACTGAAGCCGAAGTCAAGCCTGGAAATGGGAGTGGTTTGTTGATGAAGCTTGTGAAGAGATTGCCGAAGAGGATTTTGGGGGCTTTGTCTAATTTGCCTTTGGCTATTGGAGAAATGTTCACCATCGCTGCTCTCATGGCTCTTGGTACTTTCATTGATCAGGGAGAGGCCCCTGATTTTTATTTCCAGAAGTACCCTGAAGATAATCCTATGTGGGGATTCTTCACTTGGAGATGGATTCTCACACTTGGGTTTGATCATATGTACACATCTACCATTTTTCTAGCCATGTTATCTCTTCTTGGGCTCTCACTCATGGCATGCACTTACACAACTCAGATTCCTCTTGTTAAGGTTGCAAGAAGATGGAACTTTTTGCAGTCCGGTGATGCTATTAGGAAGCTGGAATGTTCTGAAATTTTACCCAGAGCATCAGTCCAAGATTTGGGGGTTGTTTTAATGGGAGCAGGATATGAGGTATTTATTAAAGGACCAACTTTATATGCTTTCAAGGGATTGGCTGGACGATTTGCGCCTATTGGTGTACATTTGGCCATGCTTTTGATTATGGGTGGTGCAACTCTCAGTGCAGCTGGGAGCTTCAGAGGTTCTGTTACAGTTCCTCAGGGACTGAATTTTGTAGTTGGAGATGTTCTGAACCCGAGCGGGTTTCTGTCCAAGCCAACTGAAGCTTTCAATACTGAAGTTCATGTCAACAACTTCTACATGGATTACTATGACACTCTGCAAATACTCAAGAATGATGAAGGACCTTTTAACTTGGCTGTGGCACCTCTTAAGATCAATGGAGACAAGAAGCTTTATGGGACTTTCTTACCCGTTGGAGATGTCGATTCACCTGATGAAGGGAAGTTTGTCGGGGTTCGACGTCCAAGCTCTAAGCTTCCAATCGATATCGACGGTATGAAAATTGAAATACTTGATGCAATTGGCAGCACTGGGCTGGAGTTGAAGACTGACCCAGGAGTGCCTGTTGTTTATGCTGGATTTGGTGCTCTAATGCTCACAACATGTATCAGTTTTCTCTCTCATTCACAGATATGGGCCATACAAGACGGAACAGTGGTGATCGTCGGAGGAAAGACGAACCGTGCAAAGGTCGAATTTCCAGAGGAGATTGACAGTTTACTCGATCGTGTTCCAGAAATCATCGAACCATCTCACAATCAGTTCAATAACAATGATGCCTAGTTACTAAGACAAAAATGGAACAAGAGAGAAACACAGTGTCCAACTACAAAATTTTGGCCTGAGATCACAGTTGGCTGTCTTCTTTCTTACATATACATATAGAGGACGGTTTTACCAATTTATAATTCTTTCATCACCGCCATGTTCCAAGTCAAATAAATTTTGTATATAATGTAACATAGGTAGCCATGTACGCCATTTATTATAAGAAAATATCGCTAATTTGAGGGTGAATAATCGACTCGAAAGTCCAAACAATACAACTGCAGGTACGATCCAACGGTTTTCAAGGTCGACATACTTGATGTACTCATTACTATGTAATTCATTTCTGTGAGGACTAAGATCTTTACTGCACAACATTACTATTTTGATACAAGAGGGTATATGATTGATGAAGGGAAGGTATCACCTTTAGTTACACTTACGATCATGCAACTCTTGTCTCTAACAAGTCAATTTGAACTACTAACCTATAAATTTATGCAACCTGCAATGCTTCTTCACGCTTAATGTCGAAGACTTTGACAAGAGCATCTTCGACAACCTAGTCAAACGCGTATGACATGTTATGGTTATAAATCTATTGCAGATCAAATATGTACCAGCAAGCATATAAGCCGAAGTGTATGGCTAACCTTATCGGGGGTCGAGGCACCGGATGTAACACCGATTGTGATAGGACCCTTGGGTAGCCAATTCTCCTTCTCAACTAACTCCCCAT

Coding sequence (CDS)

ATGGAGGGATTGATCCTTCACAATCCAAACCCATATTTATCCAAAACCCCTTTTCTTCATTCTTCCTTCAGGCCTCAAATCACTCCAAATCTCTGCTGCAGAACCCTCTCTTTCAGCGTCACTTGTAAGGTGAAGGCATCGCAGGACAAGAAGCCCAAGAATGTCAGCAACAAGATTGTGCTCTCTGAAGCAGCGCCGCCGCTTGCGGAGGAGAGCGATGACAATAATGGAAACAACACTGAAGCCGAAGTCAAGCCTGGAAATGGGAGTGGTTTGTTGATGAAGCTTGTGAAGAGATTGCCGAAGAGGATTTTGGGGGCTTTGTCTAATTTGCCTTTGGCTATTGGAGAAATGTTCACCATCGCTGCTCTCATGGCTCTTGGTACTTTCATTGATCAGGGAGAGGCCCCTGATTTTTATTTCCAGAAGTACCCTGAAGATAATCCTATGTGGGGATTCTTCACTTGGAGATGGATTCTCACACTTGGGTTTGATCATATGTACACATCTACCATTTTTCTAGCCATGTTATCTCTTCTTGGGCTCTCACTCATGGCATGCACTTACACAACTCAGATTCCTCTTGTTAAGGTTGCAAGAAGATGGAACTTTTTGCAGTCCGGTGATGCTATTAGGAAGCTGGAATGTTCTGAAATTTTACCCAGAGCATCAGTCCAAGATTTGGGGGTTGTTTTAATGGGAGCAGGATATGAGGTATTTATTAAAGGACCAACTTTATATGCTTTCAAGGGATTGGCTGGACGATTTGCGCCTATTGGTGTACATTTGGCCATGCTTTTGATTATGGGTGGTGCAACTCTCAGTGCAGCTGGGAGCTTCAGAGGTTCTGTTACAGTTCCTCAGGGACTGAATTTTGTAGTTGGAGATGTTCTGAACCCGAGCGGGTTTCTGTCCAAGCCAACTGAAGCTTTCAATACTGAAGTTCATGTCAACAACTTCTACATGGATTACTATGACACTCTGCAAATACTCAAGAATGATGAAGGACCTTTTAACTTGGCTGTGGCACCTCTTAAGATCAATGGAGACAAGAAGCTTTATGGGACTTTCTTACCCGTTGGAGATGTCGATTCACCTGATGAAGGGAAGTTTGTCGGGGTTCGACGTCCAAGCTCTAAGCTTCCAATCGATATCGACGGTATGAAAATTGAAATACTTGATGCAATTGGCAGCACTGGGCTGGAGTTGAAGACTGACCCAGGAGTGCCTGTTGTTTATGCTGGATTTGGTGCTCTAATGCTCACAACATGTATCAGTTTTCTCTCTCATTCACAGATATGGGCCATACAAGACGGAACAGTGGTGATCGTCGGAGGAAAGACGAACCGTGCAAAGGTCGAATTTCCAGAGGAGATTGACAGTTTACTCGATCGTGTTCCAGAAATCATCGAACCATCTCACAATCAGTTCAATAACAATGATGCCTAG

Protein sequence

MEGLILHNPNPYLSKTPFLHSSFRPQITPNLCCRTLSFSVTCKVKASQDKKPKNVSNKIVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDVLNPSGFLSKPTEAFNTEVHVNNFYMDYYDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPDEGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEEIDSLLDRVPEIIEPSHNQFNNNDA

Homology

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BLAST of Cp4.1LG04g08360 vs. Swiss-Prot
Match: CCS1_ORYSJ (Cytochrome c biogenesis protein CCS1, chloroplastic OS=Oryza sativa subsp. japonica GN=CCS1 PE=2 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 1.5e-152
Identity = 287/499 (57.52%), Postives = 348/499 (69.74%), Query Frame = 1


Query: 58  KIVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGLLMK--------LVKRLPKRILGALS 117
           ++V  +AAPP+++      G   E E   G G G + +        LV+RL KR L  LS
Sbjct: 68  QVVFFDAAPPVSQRGGGGGGEG-EGE---GEGEGKVARRKENAALGLVRRLTKRTLSLLS 127

Query: 118 NLPLAIGEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYT 177
           NLPLAI EMF IAALMALGT IDQGEAP +YF+K+PEDNP++GF TWRWILT GFDHM++
Sbjct: 128 NLPLAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFS 187

Query: 178 STIFLAMLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLG 237
           S +FL +L+LL  SLMACTYTTQIP+VKVARRW+F+ S  +IRK E +E LPRAS+QDLG
Sbjct: 188 SPVFLGLLALLAASLMACTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQDLG 247

Query: 238 VVLMGAGYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQG 297
           V+LMG GYEVF KGP+LYAFKGLAGRFAPIGVH+AM+ IM GATLSA GSF+GSV VPQG
Sbjct: 248 VILMGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQG 307

Query: 298 LNFVVGDVLNPSGFLSKPTEAFNTEVHVNNF-------------YMDY------------ 357
           LNFV+GDV+ P G LS   + FNTEVHVN F             Y D             
Sbjct: 308 LNFVIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMR 367

Query: 358 ----------------------YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGD 417
                                 +  LQ+ KN EGPFNLA+APLK+NGDKKL+GT LP+ +
Sbjct: 368 KTIKVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLPLEN 427

Query: 418 VDSPD-------------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLEL 477
             S +                   EGKFVGVRRPSSKLPI+IDG +I I DAIGSTGL+L
Sbjct: 428 SGSSNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTGLDL 487

Query: 478 KTDPGVPVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEEIDSLL 483
           KTDPG+P+VYAGFGALMLTTCIS+LSHSQIWA+QDG+ V++GGKTNRAK+EF EE++ LL
Sbjct: 488 KTDPGIPIVYAGFGALMLTTCISYLSHSQIWALQDGSTVVIGGKTNRAKLEFSEEMNRLL 547

[Close]

BLAST of Cp4.1LG04g08360 vs. Swiss-Prot
Match: CCS1_ARATH (Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=1 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.3e-132
Identity = 276/540 (51.11%), Postives = 350/540 (64.81%), Query Frame = 1


Query: 10  NPYLSKTPFLHSSFRPQITPNLCCRTLSFSV--TCKVKASQDKKPKNVSNK-----IVLS 69
           NP +     +H   RP    +  CRT + S+   CK++  QD   ++ SN+     I LS
Sbjct: 6   NPKILHFSKIHPFSRPS---SYLCRTRNVSLITNCKLQKPQDGNQRSSSNRNLTKTISLS 65

Query: 70  EAAPPLAEESDDN---NGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMF 129
           ++APP+ EE+ D     G N       G G    +  +K LP+++L  LSNLPLAI EMF
Sbjct: 66  DSAPPVTEETGDGIVKGGGNGGGGGGDGRGG---LGFLKILPRKVLSVLSNLPLAITEMF 125

Query: 130 TIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSL 189
           TIAALMALGT I+QGE PDFYFQKYPEDNP+ GFFTWRWI TLG DHMY++ IFL ML L
Sbjct: 126 TIAALMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVL 185

Query: 190 LGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEV 249
           L  SLMACTYTTQIPLVKVARRW+F++S +AI+K E ++ LPRAS+QDLG++LMG G+EV
Sbjct: 186 LAASLMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEV 245

Query: 250 FIKGPTLYAFKGLAGRFAP-------------------------IGVHLAMLLIMGGATL 309
           F+KGP+LYAFKGLAGRFAP                         + V   +  +MG   L
Sbjct: 246 FMKGPSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDV-L 305

Query: 310 SAAGSFR---GSVTVPQGLNFVVGDVLNPSGFLSK-----------PTEAFNTEVHVNN- 369
           +  G F     +      +N    D  + SG +S+             E     + VN+ 
Sbjct: 306 APIGFFSIPTDAFNTEVHVNRFTMDYYD-SGEVSQFHSDLSLRDLNGKEVLRKTISVNDP 365

Query: 370 --------FYMDY-YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD--- 429
                   +  D+ +  LQ+ K+ EGPFNLA+AP+KINGDKKLYGTFLPVGD ++P+   
Sbjct: 366 LRYGGVTVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKG 425

Query: 430 ----------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPV 472
                           +GKF G+RRPSSKLPI+I+GMKI I DAIGSTGLELKTDPGVPV
Sbjct: 426 ISMLARDLQSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPV 485

[Close]

BLAST of Cp4.1LG04g08360 vs. Swiss-Prot
Match: CCS1_NOSP7 (Cytochrome c biogenesis protein CcsB OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ccsB PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.4e-59
Identity = 146/430 (33.95%), Postives = 223/430 (51.86%), Query Frame = 1


Query: 100 LPKRILGALSNLPLAIGEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWI 159
           L + +L  L+NL LAI  +  IA   + GT I+QG++P FY   YPE   ++GF TW+ I
Sbjct: 21  LRQELLPVLTNLRLAIALLLLIAIFSSTGTVIEQGQSPAFYQANYPEHPALFGFLTWKVI 80

Query: 160 LTLGFDHMYTSTIFLAMLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEI 219
             +G DH+Y +  FLA+L L G SL AC++T Q+P +K A+RW + +     +KL  S  
Sbjct: 81  QVVGLDHVYRTWWFLALLILFGTSLTACSFTRQLPALKAAQRWKYYEEPRQFQKLALSAE 140

Query: 220 LPRASVQDLGVVLMGAGYEVFI---KGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSA 279
           L   S+  L  +L    Y++F    K   LYA KG+ GR  PI VH+ ++ I+ G    A
Sbjct: 141 LDNGSLNSLSQLLQKRRYKIFPDREKENILYARKGIVGRIGPIIVHIGIVAILLGGIWGA 200

Query: 280 AGSFRGSVTVPQGLNFVVGDVLN------------------------PSGFLSK------ 339
              F     V  G  F V ++++                        PSG + +      
Sbjct: 201 MTGFMAQEMVASGDTFQVTNIVDAGPLAAQVSKDWSVRVNRFWIDYTPSGGIDQFYSDMS 260

Query: 340 -----PTEAFNTEVHVNNFY----MDYYDT------LQILKNDEGPFNLAVAPLKINGDK 399
                  E  + ++ VN       + +Y T      +++  N+   F L +A L   G  
Sbjct: 261 VLNKQGEEVDHKKIFVNEPLRYRGITFYQTDWGIAGVRVQFNNSPIFQLPMALLNTKGQG 320

Query: 400 KLYGTFLPVG-------DVDSPDEGKFVGVRRPSSKL--------PIDIDGMKIEILDAI 459
           +++GT++P          + + D    V +  P+ KL           ++G+K++ILD I
Sbjct: 321 RIWGTWVPTKPDLSEGVSLLAKDLQGMVLIYDPNGKLVDTVRAGMSTQVNGVKLKILDVI 380

Query: 460 GSTGLELKTDPGVPVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFP 467
           GSTGL++K DPG+P+VY+GFG LML   +S+ SHSQIWA+Q G ++ VGGKTNRA+V F 
Sbjct: 381 GSTGLQIKADPGIPIVYSGFGLLMLGVVMSYFSHSQIWALQKGDLLYVGGKTNRAQVAFE 440

[Close]

BLAST of Cp4.1LG04g08360 vs. Swiss-Prot
Match: CCS1_TRIEI (Cytochrome c biogenesis protein CcsB OS=Trichodesmium erythraeum (strain IMS101) GN=ccsB PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-58
Identity = 149/437 (34.10%), Postives = 217/437 (49.66%), Query Frame = 1


Query: 93  LMKLVKRLPKRILGALSNLPLAIGEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWG 152
           L+  ++   + IL  L++L LAI  +  IA     GT I+QGE+  FY + YPE   ++G
Sbjct: 11  LINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYPEKPALFG 70

Query: 153 FFTWRWILTLGFDHMYTSTIFLAMLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIR 212
           F TW+ IL L  DH+Y +  FL++L L G SL ACT+T Q+P +K A RW F       +
Sbjct: 71  FLTWKVILLLELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFYNKKQQFK 130

Query: 213 KLECSEILPRASVQDLGVVLMGAGYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGA 272
            L  S  +  AS+  L  +L   GY+   +G  LY  KG+ G+  PI VH +ML+I+ G+
Sbjct: 131 NLALSAEIETASLDSLEEILQKRGYKTSKEGDKLYGRKGIIGKVGPIIVHASMLIILAGS 190

Query: 273 TLSAAGSFRGSVTVPQGLNFVVGDVL-------------------------NPSG----- 332
            + +   F G   VP G  F V +++                          PSG     
Sbjct: 191 IIGSMTGFLGQEIVPSGETFQVKNIIDAGIFAKSQIPKNWSVRVNRFWIDYTPSGGIDQF 250

Query: 333 -----FLSKPTEAFNTEVHVNNFYMDYYDT-----------LQILKNDEGPFNLAVAPLK 392
                 L K  E  + +    N  M Y+             +++  N    F L +A L 
Sbjct: 251 YSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVFRLPMAQLN 310

Query: 393 INGDKKLYGTFLPV----------------GDVDSPD-EGKFVGVRRPSSKLPIDIDGMK 452
             G  K++GT++P+                G+V   D  GK V   R    + I++ G+ 
Sbjct: 311 TEGGGKIWGTWVPIKPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVREG--MFIEVSGVT 370

Query: 453 IEILDAIGSTGLELKTDPGVPVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTN 467
           + I   IGSTGL++K DPG+P+VY GFG LML+  +S++SHSQIWA Q+   + +GGKTN
Sbjct: 371 LFIDKIIGSTGLQIKADPGIPIVYLGFGLLMLSVLMSYVSHSQIWAFQESERLYIGGKTN 430

[Close]

BLAST of Cp4.1LG04g08360 vs. Swiss-Prot
Match: CCS1_MICAN (Cytochrome c biogenesis protein CcsB OS=Microcystis aeruginosa (strain NIES-843) GN=ccsB PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-56
Identity = 139/428 (32.48%), Postives = 216/428 (50.47%), Query Frame = 1


Query: 102 KRILGALSNLPLAIGEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILT 161
           ++ +  +++L LAI  +  IA     GT I+QG++  FY   YPE   ++GF TW+ +L 
Sbjct: 19  RKFIQTIADLRLAIILLLLIAIFSISGTVIEQGQSLSFYQANYPEKPALFGFLTWKVLLL 78

Query: 162 LGFDHMYTSTIFLAMLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILP 221
           LG +H+Y++  +L++L L G SL ACT+  Q+P +K AR W F Q     +KL  S  L 
Sbjct: 79  LGLNHVYSTWWYLSLLILFGSSLTACTFRRQLPALKAARNWQFYQQSRQFQKLALSAELE 138

Query: 222 RASVQDLGVVLMGAGYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFR 281
             S++ L  +L   GY+VF++  +LYA KGL G+  PI VH AML+I+ GA   A   F 
Sbjct: 139 TGSLESLTPLLEKKGYKVFLENNSLYARKGLIGKIGPIIVHAAMLIILAGAIWGALTGFF 198

Query: 282 GSVTVPQGLNFVVGDVLN---------PSGFLSKPTEA---FNTEVHVNNFYMD------ 341
               V  G +F V +++          P  +  K       ++ +  +  FY D      
Sbjct: 199 AQEMVASGDSFQVKNIIEAGPLSKNSLPKDWGIKVNRFWIDYSPKGDIEQFYSDLSVIDN 258

Query: 342 ----------------------YYDT------LQILKNDEGPFNLAVAPLKINGDKKLYG 401
                                 +Y T      +++  N+     L +A L   G+ +++G
Sbjct: 259 QGQEIDRKTIQVNQPLHHKGVTFYQTSWGIAGVKVQVNNSPILQLPMASLDTKGNGQIWG 318

Query: 402 TFLPV----------------GDVDSPD-EGKFVGVRRPSSKLPIDIDGMKIEILDAIGS 461
           T++P                 G V   D +G      R    +PI+  G+ ++I++ +GS
Sbjct: 319 TWIPTKTDLSEGVSLLTRDLQGTVIVYDAQGDLTSAVREGMTIPIN--GVNLKIVELVGS 378

Query: 462 TGLELKTDPGVPVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEE 467
           TGL++K DPGVP+VY GF  LM+   +S+ SHSQIWA+Q G    +GGKTNRA+V F  E
Sbjct: 379 TGLQIKADPGVPIVYLGFALLMMGVVMSYFSHSQIWALQSGDRFYIGGKTNRAQVSFERE 438

[Close]

BLAST of Cp4.1LG04g08360 vs. TrEMBL
Match: A0A0A0K6S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075670 PE=3 SV=1)

HSP 1 Score: 745.7 bits (1924), Expect = 3.4e-212
Identity = 407/553 (73.60%), Postives = 433/553 (78.30%), Query Frame = 1


Query: 1   MEGLILHNPNPYLSK-----TPFLHSSFRPQITPNLCCRTLSFSVTCKVKASQDKKPKNV 60
           ME LIL+N NP LSK     T FLHS F  QIT     +  SFSVTCK KASQDKK KN 
Sbjct: 11  MERLILNNLNPSLSKPFLLKTSFLHSVFSHQITLRTA-QIRSFSVTCKNKASQDKKLKNA 70

Query: 61  SNKIVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAI 120
           SNKIVLSEAAPPLAEE  D +GN  EAEVKPGNGS   MKLVKRLPKRILGALSNLPLAI
Sbjct: 71  SNKIVLSEAAPPLAEEESDKSGN-AEAEVKPGNGSRS-MKLVKRLPKRILGALSNLPLAI 130

Query: 121 GEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLA 180
           GEMFTIAALMALGT IDQGEAPDFYFQKYPEDNP+WGFF WRWILTLGFDHMY+STIFL 
Sbjct: 131 GEMFTIAALMALGTVIDQGEAPDFYFQKYPEDNPLWGFFNWRWILTLGFDHMYSSTIFLG 190

Query: 181 MLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGA 240
           ML+LLG+SLMACTYTTQIPLVKVARRWNFLQSG+ IRKLECS+ILPRASVQDLGVVLMGA
Sbjct: 191 MLALLGISLMACTYTTQIPLVKVARRWNFLQSGETIRKLECSDILPRASVQDLGVVLMGA 250

Query: 241 GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVG 300
           GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIM GATLSA GSFRGSVTVPQGLNFVVG
Sbjct: 251 GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVG 310

Query: 301 DVLNPSG-------------------------------------FLSKPTEAFNTEVHVN 360
           DVLNPSG                                     F     E     + VN
Sbjct: 311 DVLNPSGFLAKPTEAFNTEVHVNKFYMNYYDSGEIKQFYSDLSLFDLNGKEVMRKTISVN 370

Query: 361 N---------FYMDY-YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD- 420
           N         +  D+ +  LQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDV+SPD 
Sbjct: 371 NPLRYGGFTIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVNSPDV 430

Query: 421 ------------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGV 480
                             EGKFVGVRRPSS+LPIDI+G+KIEI+DAIGSTGLELKTDPGV
Sbjct: 431 KGISMLARDLQSIVLYDQEGKFVGVRRPSSRLPIDINGIKIEIVDAIGSTGLELKTDPGV 490

Query: 481 PVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEEIDSLLDRVPEI 483
           P+VYAGFGALMLTTC+S+LSHSQ+WAIQDGTVVIVGGKTNRAKVEFPEE+D LLD+VPEI
Sbjct: 491 PIVYAGFGALMLTTCVSYLSHSQVWAIQDGTVVIVGGKTNRAKVEFPEEMDRLLDKVPEI 550

[Close]

BLAST of Cp4.1LG04g08360 vs. TrEMBL
Match: A0A067LN40_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10055 PE=3 SV=1)

HSP 1 Score: 641.7 bits (1654), Expect = 7.0e-181
Identity = 349/540 (64.63%), Postives = 399/540 (73.89%), Query Frame = 1


Query: 11  PYLSKTPFLHS---------SFRPQITPNLCCR-TLSFSVTCKVKASQD--KKPKNVSNK 70
           P+L KT FL S           +PQI  +LC R TLS ++TCK+K S++  KK  NVS K
Sbjct: 12  PFLLKTHFLKSPPVINSTFIKLKPQIH-SLCHRKTLSLTITCKLKTSKEIKKKDNNVSGK 71

Query: 71  IVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGL-LMKLVKRLPKRILGALSNLPLAIGE 130
           I+LS +APP++EES D +G   E     G+G G   +  +KRLP+R+L  LSNLPLAIGE
Sbjct: 72  ILLSNSAPPVSEESGDLDGKVPEKAGSGGSGGGGGPLGFMKRLPRRVLAVLSNLPLAIGE 131

Query: 131 MFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAML 190
           MF IAALMALGTFIDQGE P+FYFQK+PE+NP+ GFFTWRWILTLGFDHM++S +FL ML
Sbjct: 132 MFVIAALMALGTFIDQGETPEFYFQKFPEENPVLGFFTWRWILTLGFDHMFSSPVFLGML 191

Query: 191 SLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGY 250
           +LLG SLMACTYTTQIPLVKVARRWNFL S +AIRK E S+ LP AS+QDLGV+LMGAGY
Sbjct: 192 ALLGTSLMACTYTTQIPLVKVARRWNFLLSSEAIRKQEYSDTLPSASIQDLGVILMGAGY 251

Query: 251 EVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDV 310
           EVF+KGP+LYAFKGLAGRFAPIGVHLAMLLIM G TL+AAGSFRGSVTVPQGLNFVVGDV
Sbjct: 252 EVFLKGPSLYAFKGLAGRFAPIGVHLAMLLIMAGGTLTAAGSFRGSVTVPQGLNFVVGDV 311

Query: 311 LNPSGFLSKPTEAFNTEVHVNNF-------------YMDY-------------------- 370
           L PSGFLS PTEAFNTEVHVN F             Y D                     
Sbjct: 312 LGPSGFLSTPTEAFNTEVHVNKFYMEYYDSGEVSQFYSDLSLFDLDGKEVLRKTISVNNP 371

Query: 371 --------------YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD--- 430
                         +  LQILKNDEGPFNLA+APLK+NGDKKL+GTFLPVGDV+SP+   
Sbjct: 372 LRYGGITIYQTDWSFSALQILKNDEGPFNLAMAPLKVNGDKKLFGTFLPVGDVNSPNVKG 431

Query: 431 ----------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPV 472
                           EGKFVGVRRP+SKLPI+IDG +I I DAIGSTGLELKTDPGVPV
Sbjct: 432 ISMLARDLQSIVLYDQEGKFVGVRRPNSKLPIEIDGTRIIIEDAIGSTGLELKTDPGVPV 491

[Close]

BLAST of Cp4.1LG04g08360 vs. TrEMBL
Match: D7TPX3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02040 PE=3 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 2.7e-180
Identity = 340/533 (63.79%), Postives = 395/533 (74.11%), Query Frame = 1


Query: 15  KTPFLHSSFRPQITP------NLCCRT-LSFSVTCKVKASQD-KKPKNVSNKIVLSEAAP 74
           K+P L SSF+PQ  P      + C  T LSFS+TCK+K S+D K  K+++ KIVLSE AP
Sbjct: 15  KSPLLRSSFKPQFFPYTTQISSPCSSTPLSFSITCKLKTSEDGKSSKSLAKKIVLSEGAP 74

Query: 75  PLAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMFTIAALMA 134
            ++E+   N     +   K G G G    LVKR P+++L  LSNLPLAIGEMFT+AALMA
Sbjct: 75  AVSEDGAGNGEAQPKPASKGGGGGGGFGGLVKRFPRKVLSRLSNLPLAIGEMFTVAALMA 134

Query: 135 LGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSLLGLSLMA 194
           LGT IDQGEAPD+YFQK+PEDNP+ GFFTWRW+LTLGFDHM++S IFL ML+LL  SLMA
Sbjct: 135 LGTAIDQGEAPDYYFQKFPEDNPVLGFFTWRWVLTLGFDHMFSSPIFLGMLALLATSLMA 194

Query: 195 CTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEVFIKGPTL 254
           CTYTTQIPLVKVARRWNFL S +AIRK E SE LP+ASV+DLGVVLMGAGYEVF+KGP+L
Sbjct: 195 CTYTTQIPLVKVARRWNFLHSAEAIRKQEFSESLPKASVRDLGVVLMGAGYEVFLKGPSL 254

Query: 255 YAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDVLNPSGFLSK 314
           YAFKGLAGRFAPIGVHLAMLLIM G TLSA GSFRGSVTVPQGLNFV+GDVL+PSGFLS 
Sbjct: 255 YAFKGLAGRFAPIGVHLAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLSPSGFLST 314

Query: 315 PTEAFNTEVHVNNF---YMD---------------------------------------- 374
           PT+AF+TEVHVN F   Y D                                        
Sbjct: 315 PTKAFDTEVHVNRFYMDYYDSGEVLQFHTDLSLFDLNGKEVMRKTISVNDPLRFDGITIY 374

Query: 375 ----YYDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD------------ 434
                +  LQI K+DEGPFNLA+APLK+NGDKKL+GTFLPVGD DSP+            
Sbjct: 375 QTDWSFSALQIRKDDEGPFNLAMAPLKLNGDKKLFGTFLPVGDSDSPNVKGISMLARDLQ 434

Query: 435 -------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPVVYAGFGALM 474
                  EGKF GVRRP+S LPIDIDG +I I DAIGS+GL+LKTDPGVP+VYAGFGALM
Sbjct: 435 SIVLYDKEGKFAGVRRPNSNLPIDIDGTRIVIEDAIGSSGLDLKTDPGVPIVYAGFGALM 494

[Close]

BLAST of Cp4.1LG04g08360 vs. TrEMBL
Match: B9RZC9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938170 PE=3 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 2.3e-179
Identity = 339/532 (63.72%), Postives = 395/532 (74.25%), Query Frame = 1


Query: 12  YLSKTPFLHSSFRPQITPNLCC--RTLSFSVTCKVKASQD--KKPKNVSNKIVLSEAAPP 71
           +++  PF++S+ +     ++ C  R LS SV+CK+K S++   K KNVS KI+LS +APP
Sbjct: 16  FINFHPFINSTIKLNPQIHILCNRRALSLSVSCKLKTSKEVENKDKNVSRKILLSNSAPP 75

Query: 72  LAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMFTIAALMAL 131
           ++EE     GNN E   K   G G  ++  KRLP+++L  LSNLPLAIGEMF IA LMAL
Sbjct: 76  VSEEG--GAGNNGEIPDKAAKGGGGPLRFFKRLPRKVLSVLSNLPLAIGEMFAIAGLMAL 135

Query: 132 GTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSLLGLSLMAC 191
           GT IDQG+AP+ YFQ YPE+NP+ GFFTWRWILTLGFDHM++S +FL ML+LLGLSLMAC
Sbjct: 136 GTVIDQGQAPEIYFQNYPEENPVLGFFTWRWILTLGFDHMFSSPVFLGMLALLGLSLMAC 195

Query: 192 TYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEVFIKGPTLY 251
           TYTTQIPLVKVARRWNFL S +AIRK E ++ LP+AS+QD+GV+LMGAGYEVF+KGP+LY
Sbjct: 196 TYTTQIPLVKVARRWNFLHSAEAIRKQEFADTLPQASIQDVGVILMGAGYEVFLKGPSLY 255

Query: 252 AFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDVLNPSGFLSKP 311
           AFKGLAGRFAPIGVHLAMLLIM GATL+A GSFRGSVTVPQGLNFVVGDVL PSGFLS P
Sbjct: 256 AFKGLAGRFAPIGVHLAMLLIMAGATLTATGSFRGSVTVPQGLNFVVGDVLGPSGFLSTP 315

Query: 312 TEAFNTEVHVNNF-------------YMDY------------------------------ 371
           TEAFNTEVHVN F             Y D                               
Sbjct: 316 TEAFNTEVHVNKFYMDYYDSGEVSQFYSDLSLYDIDGKEVLRKTISVNNPLRYGGFTIYQ 375

Query: 372 ----YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD------------- 431
               +  LQI KNDEGPFNLA+APLKINGDKKL+GTFLPVGDV+SP+             
Sbjct: 376 TDWSFSALQIRKNDEGPFNLAMAPLKINGDKKLFGTFLPVGDVNSPNVKGISMLARDLQS 435

Query: 432 ------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPVVYAGFGALML 474
                 EGKFVGVRRP+SKLPIDIDG +I I DAIGSTGLELKTDPGVPVVYAGFGALML
Sbjct: 436 IVLYDQEGKFVGVRRPNSKLPIDIDGTRIVIEDAIGSTGLELKTDPGVPVVYAGFGALML 495

[Close]

BLAST of Cp4.1LG04g08360 vs. TrEMBL
Match: A0A0G2T403_9ROSI (Cytochrome c biogenesis protein OS=Francoa sonchifolia GN=ccs1 PE=2 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 5.6e-170
Identity = 327/537 (60.89%), Postives = 383/537 (71.32%), Query Frame = 1


Query: 9   PNPYLSKT-----PFLHSSFRPQITPNLCCRTLSFSVTCKVKASQDKKPKNVSNKIVLSE 68
           PNPY+ KT     P  HS F+P +  +   RTL  S+TCK++    KK KNVS KI+LSE
Sbjct: 10  PNPYVPKTQLLKSPLFHSKFKPLLHKSNPKRTLLISITCKLQLP--KKDKNVSKKIILSE 69

Query: 69  AAPP-LAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMFTIA 128
             PP LAE+     G   E   + G   G+L  LVK+LP+++L  LSNL LAIGEMF IA
Sbjct: 70  VPPPPLAED-----GGEKEEPPRDGGKKGVL-SLVKKLPRKVLTVLSNLQLAIGEMFAIA 129

Query: 129 ALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSLLGL 188
           ALMALGT IDQGEAPD+YF+KYPEDNP+ GFFTWRWILTLGFDHM++S +FLA+L+LLG 
Sbjct: 130 ALMALGTAIDQGEAPDYYFRKYPEDNPVLGFFTWRWILTLGFDHMFSSPVFLALLALLGT 189

Query: 189 SLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEVFIK 248
           SLMACTYTTQIPLVKVARRW FL S  AIRK E S+ L +AS++DLG++LMG+GYEV++K
Sbjct: 190 SLMACTYTTQIPLVKVARRWKFLYSVAAIRKQEFSDTLLKASIRDLGLILMGSGYEVYVK 249

Query: 249 GPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDVLNPSG 308
           GP LYAFKGLAGRFAPIGVH+AMLLIM G TLSA GSFRGSVTVPQGLNFV+GDV+  SG
Sbjct: 250 GPALYAFKGLAGRFAPIGVHIAMLLIMAGGTLSATGSFRGSVTVPQGLNFVIGDVMGASG 309

Query: 309 FLSKPTE-------------AFNTEVHVNNFYMDY------------------------- 368
           FLS PTE              F     V+ F+ D                          
Sbjct: 310 FLSTPTEAFNTEVHVNRFYMDFYDSGEVSQFHTDLSLFDIDGKEVMRKTISVNDPLRYGG 369

Query: 369 ---------YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD-------- 428
                    +  LQ+LK+DEGPFNLA+APL+INGDKKL+GTFLPV D DSP+        
Sbjct: 370 ITMYQTDWSFSALQVLKDDEGPFNLAMAPLQINGDKKLFGTFLPVADADSPNVKGISMLA 429

Query: 429 -----------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPVVYAGF 474
                      EGKF GVRRP+SKLPIDIDG ++ I+DAIGSTGL LKTDPGVPVVYAGF
Sbjct: 430 RDLQSIVLYDKEGKFAGVRRPNSKLPIDIDGTRVVIVDAIGSTGLNLKTDPGVPVVYAGF 489

[Close]

BLAST of Cp4.1LG04g08360 vs. TAIR10
Match: AT1G49380.1 (AT1G49380.1 cytochrome c biogenesis protein family)

HSP 1 Score: 474.6 bits (1220), Expect = 7.5e-134
Identity = 276/540 (51.11%), Postives = 350/540 (64.81%), Query Frame = 1


Query: 10  NPYLSKTPFLHSSFRPQITPNLCCRTLSFSV--TCKVKASQDKKPKNVSNK-----IVLS 69
           NP +     +H   RP    +  CRT + S+   CK++  QD   ++ SN+     I LS
Sbjct: 6   NPKILHFSKIHPFSRPS---SYLCRTRNVSLITNCKLQKPQDGNQRSSSNRNLTKTISLS 65

Query: 70  EAAPPLAEESDDN---NGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMF 129
           ++APP+ EE+ D     G N       G G    +  +K LP+++L  LSNLPLAI EMF
Sbjct: 66  DSAPPVTEETGDGIVKGGGNGGGGGGDGRGG---LGFLKILPRKVLSVLSNLPLAITEMF 125

Query: 130 TIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSL 189
           TIAALMALGT I+QGE PDFYFQKYPEDNP+ GFFTWRWI TLG DHMY++ IFL ML L
Sbjct: 126 TIAALMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVL 185

Query: 190 LGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEV 249
           L  SLMACTYTTQIPLVKVARRW+F++S +AI+K E ++ LPRAS+QDLG++LMG G+EV
Sbjct: 186 LAASLMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEV 245

Query: 250 FIKGPTLYAFKGLAGRFAP-------------------------IGVHLAMLLIMGGATL 309
           F+KGP+LYAFKGLAGRFAP                         + V   +  +MG   L
Sbjct: 246 FMKGPSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDV-L 305

Query: 310 SAAGSFR---GSVTVPQGLNFVVGDVLNPSGFLSK-----------PTEAFNTEVHVNN- 369
           +  G F     +      +N    D  + SG +S+             E     + VN+ 
Sbjct: 306 APIGFFSIPTDAFNTEVHVNRFTMDYYD-SGEVSQFHSDLSLRDLNGKEVLRKTISVNDP 365

Query: 370 --------FYMDY-YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD--- 429
                   +  D+ +  LQ+ K+ EGPFNLA+AP+KINGDKKLYGTFLPVGD ++P+   
Sbjct: 366 LRYGGVTVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKG 425

Query: 430 ----------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPV 472
                           +GKF G+RRPSSKLPI+I+GMKI I DAIGSTGLELKTDPGVPV
Sbjct: 426 ISMLARDLQSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPV 485

[Close]

BLAST of Cp4.1LG04g08360 vs. NCBI nr
Match: gi|659109781|ref|XP_008454876.1| (PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Cucumis melo])

HSP 1 Score: 776.9 bits (2005), Expect = 2.0e-221
Identity = 419/553 (75.77%), Postives = 441/553 (79.75%), Query Frame = 1


Query: 1   MEGLILHNPNPYLSK-----TPFLHSSFRPQITPNLCCRTLSFSVTCKVKASQDKKPKNV 60
           ME LIL+NPNP LSK     TPFLHS F  QITP    +  SFSVTCK KASQDKK KNV
Sbjct: 11  MERLILNNPNPSLSKPFLLKTPFLHSVFGHQITPRTA-QIRSFSVTCKNKASQDKKLKNV 70

Query: 61  SNKIVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAI 120
           SNKIVLSEAAPPLAEE  D +GN  EAEVKPGNGSG   KLVKRLPKRILGALSNLPLAI
Sbjct: 71  SNKIVLSEAAPPLAEEESDKSGN-AEAEVKPGNGSGST-KLVKRLPKRILGALSNLPLAI 130

Query: 121 GEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLA 180
           GEMFTIAALMALGT IDQGEAPDFYFQKYPEDNP+WGFFTWRWILTLGFDHMY+STIFL 
Sbjct: 131 GEMFTIAALMALGTVIDQGEAPDFYFQKYPEDNPLWGFFTWRWILTLGFDHMYSSTIFLG 190

Query: 181 MLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGA 240
           ML+LLG+SLMACTYTTQIPLVKVARRWNFLQSG+ IRKLECS+ILPRASVQDLGVVLMGA
Sbjct: 191 MLALLGISLMACTYTTQIPLVKVARRWNFLQSGETIRKLECSDILPRASVQDLGVVLMGA 250

Query: 241 GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVG 300
           GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIM GATLSA GSFRGSVTVPQGLNFVVG
Sbjct: 251 GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVG 310

Query: 301 DVLNPSGFLSKPTE-------------AFNTEVHVNNFYMDY------------------ 360
           DVLNPSGFLSKPTE              +     V  FY D                   
Sbjct: 311 DVLNPSGFLSKPTEAFNTEVHVNKFYMNYYDSGEVKQFYSDLSLFDLNGKEVMRKTISVN 370

Query: 361 ----------------YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD- 420
                           +  LQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSP+ 
Sbjct: 371 NPLRYGGFTIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPNV 430

Query: 421 ------------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGV 480
                             EGKFVGVRRPSS+LPIDI+G+KIEI+DAIGSTGLELKTDPGV
Sbjct: 431 KGISMLARDLQSIVLYDQEGKFVGVRRPSSRLPIDINGIKIEIVDAIGSTGLELKTDPGV 490

Query: 481 PVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEEIDSLLDRVPEI 483
           P+VYAGFGALMLTTC+S+LSHSQIWAIQDGTVVIVGGKTNRAKVEFPEE+D LLD+VPEI
Sbjct: 491 PIVYAGFGALMLTTCVSYLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEEMDRLLDKVPEI 550

[Close]

BLAST of Cp4.1LG04g08360 vs. NCBI nr
Match: gi|778725296|ref|XP_011658930.1| (PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 745.7 bits (1924), Expect = 4.9e-212
Identity = 407/553 (73.60%), Postives = 433/553 (78.30%), Query Frame = 1


Query: 1   MEGLILHNPNPYLSK-----TPFLHSSFRPQITPNLCCRTLSFSVTCKVKASQDKKPKNV 60
           ME LIL+N NP LSK     T FLHS F  QIT     +  SFSVTCK KASQDKK KN 
Sbjct: 11  MERLILNNLNPSLSKPFLLKTSFLHSVFSHQITLRTA-QIRSFSVTCKNKASQDKKLKNA 70

Query: 61  SNKIVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAI 120
           SNKIVLSEAAPPLAEE  D +GN  EAEVKPGNGS   MKLVKRLPKRILGALSNLPLAI
Sbjct: 71  SNKIVLSEAAPPLAEEESDKSGN-AEAEVKPGNGSRS-MKLVKRLPKRILGALSNLPLAI 130

Query: 121 GEMFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLA 180
           GEMFTIAALMALGT IDQGEAPDFYFQKYPEDNP+WGFF WRWILTLGFDHMY+STIFL 
Sbjct: 131 GEMFTIAALMALGTVIDQGEAPDFYFQKYPEDNPLWGFFNWRWILTLGFDHMYSSTIFLG 190

Query: 181 MLSLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGA 240
           ML+LLG+SLMACTYTTQIPLVKVARRWNFLQSG+ IRKLECS+ILPRASVQDLGVVLMGA
Sbjct: 191 MLALLGISLMACTYTTQIPLVKVARRWNFLQSGETIRKLECSDILPRASVQDLGVVLMGA 250

Query: 241 GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVG 300
           GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIM GATLSA GSFRGSVTVPQGLNFVVG
Sbjct: 251 GYEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVG 310

Query: 301 DVLNPSG-------------------------------------FLSKPTEAFNTEVHVN 360
           DVLNPSG                                     F     E     + VN
Sbjct: 311 DVLNPSGFLAKPTEAFNTEVHVNKFYMNYYDSGEIKQFYSDLSLFDLNGKEVMRKTISVN 370

Query: 361 N---------FYMDY-YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD- 420
           N         +  D+ +  LQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDV+SPD 
Sbjct: 371 NPLRYGGFTIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVNSPDV 430

Query: 421 ------------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGV 480
                             EGKFVGVRRPSS+LPIDI+G+KIEI+DAIGSTGLELKTDPGV
Sbjct: 431 KGISMLARDLQSIVLYDQEGKFVGVRRPSSRLPIDINGIKIEIVDAIGSTGLELKTDPGV 490

Query: 481 PVVYAGFGALMLTTCISFLSHSQIWAIQDGTVVIVGGKTNRAKVEFPEEIDSLLDRVPEI 483
           P+VYAGFGALMLTTC+S+LSHSQ+WAIQDGTVVIVGGKTNRAKVEFPEE+D LLD+VPEI
Sbjct: 491 PIVYAGFGALMLTTCVSYLSHSQVWAIQDGTVVIVGGKTNRAKVEFPEEMDRLLDKVPEI 550

[Close]

BLAST of Cp4.1LG04g08360 vs. NCBI nr
Match: gi|802539068|ref|XP_012069488.1| (PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic isoform X1 [Jatropha curcas])

HSP 1 Score: 641.7 bits (1654), Expect = 1.0e-180
Identity = 349/540 (64.63%), Postives = 399/540 (73.89%), Query Frame = 1


Query: 11  PYLSKTPFLHS---------SFRPQITPNLCCR-TLSFSVTCKVKASQD--KKPKNVSNK 70
           P+L KT FL S           +PQI  +LC R TLS ++TCK+K S++  KK  NVS K
Sbjct: 12  PFLLKTHFLKSPPVINSTFIKLKPQIH-SLCHRKTLSLTITCKLKTSKEIKKKDNNVSGK 71

Query: 71  IVLSEAAPPLAEESDDNNGNNTEAEVKPGNGSGL-LMKLVKRLPKRILGALSNLPLAIGE 130
           I+LS +APP++EES D +G   E     G+G G   +  +KRLP+R+L  LSNLPLAIGE
Sbjct: 72  ILLSNSAPPVSEESGDLDGKVPEKAGSGGSGGGGGPLGFMKRLPRRVLAVLSNLPLAIGE 131

Query: 131 MFTIAALMALGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAML 190
           MF IAALMALGTFIDQGE P+FYFQK+PE+NP+ GFFTWRWILTLGFDHM++S +FL ML
Sbjct: 132 MFVIAALMALGTFIDQGETPEFYFQKFPEENPVLGFFTWRWILTLGFDHMFSSPVFLGML 191

Query: 191 SLLGLSLMACTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGY 250
           +LLG SLMACTYTTQIPLVKVARRWNFL S +AIRK E S+ LP AS+QDLGV+LMGAGY
Sbjct: 192 ALLGTSLMACTYTTQIPLVKVARRWNFLLSSEAIRKQEYSDTLPSASIQDLGVILMGAGY 251

Query: 251 EVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDV 310
           EVF+KGP+LYAFKGLAGRFAPIGVHLAMLLIM G TL+AAGSFRGSVTVPQGLNFVVGDV
Sbjct: 252 EVFLKGPSLYAFKGLAGRFAPIGVHLAMLLIMAGGTLTAAGSFRGSVTVPQGLNFVVGDV 311

Query: 311 LNPSGFLSKPTEAFNTEVHVNNF-------------YMDY-------------------- 370
           L PSGFLS PTEAFNTEVHVN F             Y D                     
Sbjct: 312 LGPSGFLSTPTEAFNTEVHVNKFYMEYYDSGEVSQFYSDLSLFDLDGKEVLRKTISVNNP 371

Query: 371 --------------YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD--- 430
                         +  LQILKNDEGPFNLA+APLK+NGDKKL+GTFLPVGDV+SP+   
Sbjct: 372 LRYGGITIYQTDWSFSALQILKNDEGPFNLAMAPLKVNGDKKLFGTFLPVGDVNSPNVKG 431

Query: 431 ----------------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPV 472
                           EGKFVGVRRP+SKLPI+IDG +I I DAIGSTGLELKTDPGVPV
Sbjct: 432 ISMLARDLQSIVLYDQEGKFVGVRRPNSKLPIEIDGTRIIIEDAIGSTGLELKTDPGVPV 491

[Close]

BLAST of Cp4.1LG04g08360 vs. NCBI nr
Match: gi|225428564|ref|XP_002281077.1| (PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Vitis vinifera])

HSP 1 Score: 639.8 bits (1649), Expect = 3.8e-180
Identity = 340/533 (63.79%), Postives = 395/533 (74.11%), Query Frame = 1


Query: 15  KTPFLHSSFRPQITP------NLCCRT-LSFSVTCKVKASQD-KKPKNVSNKIVLSEAAP 74
           K+P L SSF+PQ  P      + C  T LSFS+TCK+K S+D K  K+++ KIVLSE AP
Sbjct: 15  KSPLLRSSFKPQFFPYTTQISSPCSSTPLSFSITCKLKTSEDGKSSKSLAKKIVLSEGAP 74

Query: 75  PLAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMFTIAALMA 134
            ++E+   N     +   K G G G    LVKR P+++L  LSNLPLAIGEMFT+AALMA
Sbjct: 75  AVSEDGAGNGEAQPKPASKGGGGGGGFGGLVKRFPRKVLSRLSNLPLAIGEMFTVAALMA 134

Query: 135 LGTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSLLGLSLMA 194
           LGT IDQGEAPD+YFQK+PEDNP+ GFFTWRW+LTLGFDHM++S IFL ML+LL  SLMA
Sbjct: 135 LGTAIDQGEAPDYYFQKFPEDNPVLGFFTWRWVLTLGFDHMFSSPIFLGMLALLATSLMA 194

Query: 195 CTYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEVFIKGPTL 254
           CTYTTQIPLVKVARRWNFL S +AIRK E SE LP+ASV+DLGVVLMGAGYEVF+KGP+L
Sbjct: 195 CTYTTQIPLVKVARRWNFLHSAEAIRKQEFSESLPKASVRDLGVVLMGAGYEVFLKGPSL 254

Query: 255 YAFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDVLNPSGFLSK 314
           YAFKGLAGRFAPIGVHLAMLLIM G TLSA GSFRGSVTVPQGLNFV+GDVL+PSGFLS 
Sbjct: 255 YAFKGLAGRFAPIGVHLAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLSPSGFLST 314

Query: 315 PTEAFNTEVHVNNF---YMD---------------------------------------- 374
           PT+AF+TEVHVN F   Y D                                        
Sbjct: 315 PTKAFDTEVHVNRFYMDYYDSGEVLQFHTDLSLFDLNGKEVMRKTISVNDPLRFDGITIY 374

Query: 375 ----YYDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD------------ 434
                +  LQI K+DEGPFNLA+APLK+NGDKKL+GTFLPVGD DSP+            
Sbjct: 375 QTDWSFSALQIRKDDEGPFNLAMAPLKLNGDKKLFGTFLPVGDSDSPNVKGISMLARDLQ 434

Query: 435 -------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPVVYAGFGALM 474
                  EGKF GVRRP+S LPIDIDG +I I DAIGS+GL+LKTDPGVP+VYAGFGALM
Sbjct: 435 SIVLYDKEGKFAGVRRPNSNLPIDIDGTRIVIEDAIGSSGLDLKTDPGVPIVYAGFGALM 494

[Close]

BLAST of Cp4.1LG04g08360 vs. NCBI nr
Match: gi|255556127|ref|XP_002519098.1| (PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 636.7 bits (1641), Expect = 3.2e-179
Identity = 339/532 (63.72%), Postives = 395/532 (74.25%), Query Frame = 1


Query: 12  YLSKTPFLHSSFRPQITPNLCC--RTLSFSVTCKVKASQD--KKPKNVSNKIVLSEAAPP 71
           +++  PF++S+ +     ++ C  R LS SV+CK+K S++   K KNVS KI+LS +APP
Sbjct: 16  FINFHPFINSTIKLNPQIHILCNRRALSLSVSCKLKTSKEVENKDKNVSRKILLSNSAPP 75

Query: 72  LAEESDDNNGNNTEAEVKPGNGSGLLMKLVKRLPKRILGALSNLPLAIGEMFTIAALMAL 131
           ++EE     GNN E   K   G G  ++  KRLP+++L  LSNLPLAIGEMF IA LMAL
Sbjct: 76  VSEEG--GAGNNGEIPDKAAKGGGGPLRFFKRLPRKVLSVLSNLPLAIGEMFAIAGLMAL 135

Query: 132 GTFIDQGEAPDFYFQKYPEDNPMWGFFTWRWILTLGFDHMYTSTIFLAMLSLLGLSLMAC 191
           GT IDQG+AP+ YFQ YPE+NP+ GFFTWRWILTLGFDHM++S +FL ML+LLGLSLMAC
Sbjct: 136 GTVIDQGQAPEIYFQNYPEENPVLGFFTWRWILTLGFDHMFSSPVFLGMLALLGLSLMAC 195

Query: 192 TYTTQIPLVKVARRWNFLQSGDAIRKLECSEILPRASVQDLGVVLMGAGYEVFIKGPTLY 251
           TYTTQIPLVKVARRWNFL S +AIRK E ++ LP+AS+QD+GV+LMGAGYEVF+KGP+LY
Sbjct: 196 TYTTQIPLVKVARRWNFLHSAEAIRKQEFADTLPQASIQDVGVILMGAGYEVFLKGPSLY 255

Query: 252 AFKGLAGRFAPIGVHLAMLLIMGGATLSAAGSFRGSVTVPQGLNFVVGDVLNPSGFLSKP 311
           AFKGLAGRFAPIGVHLAMLLIM GATL+A GSFRGSVTVPQGLNFVVGDVL PSGFLS P
Sbjct: 256 AFKGLAGRFAPIGVHLAMLLIMAGATLTATGSFRGSVTVPQGLNFVVGDVLGPSGFLSTP 315

Query: 312 TEAFNTEVHVNNF-------------YMDY------------------------------ 371
           TEAFNTEVHVN F             Y D                               
Sbjct: 316 TEAFNTEVHVNKFYMDYYDSGEVSQFYSDLSLYDIDGKEVLRKTISVNNPLRYGGFTIYQ 375

Query: 372 ----YDTLQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVDSPD------------- 431
               +  LQI KNDEGPFNLA+APLKINGDKKL+GTFLPVGDV+SP+             
Sbjct: 376 TDWSFSALQIRKNDEGPFNLAMAPLKINGDKKLFGTFLPVGDVNSPNVKGISMLARDLQS 435

Query: 432 ------EGKFVGVRRPSSKLPIDIDGMKIEILDAIGSTGLELKTDPGVPVVYAGFGALML 474
                 EGKFVGVRRP+SKLPIDIDG +I I DAIGSTGLELKTDPGVPVVYAGFGALML
Sbjct: 436 IVLYDQEGKFVGVRRPNSKLPIDIDGTRIVIEDAIGSTGLELKTDPGVPVVYAGFGALML 495

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCS1_ORYSJ	1.5e-152	57.52	Cytochrome c biogenesis protein CCS1, chloroplastic OS=Oryza sativa subsp. japon...	[more]
CCS1_ARATH	1.3e-132	51.11	Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=C...	[more]
CCS1_NOSP7	7.4e-59	33.95	Cytochrome c biogenesis protein CcsB OS=Nostoc punctiforme (strain ATCC 29133 / ...	[more]
CCS1_TRIEI	2.8e-58	34.10	Cytochrome c biogenesis protein CcsB OS=Trichodesmium erythraeum (strain IMS101)...	[more]
CCS1_MICAN	4.5e-56	32.48	Cytochrome c biogenesis protein CcsB OS=Microcystis aeruginosa (strain NIES-843)...	[more]

BLAST of Cp4.1LG04g08360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6S4_CUCSA	3.4e-212	73.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075670 PE=3 SV=1	[more]
A0A067LN40_JATCU	7.0e-181	64.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10055 PE=3 SV=1	[more]
D7TPX3_VITVI	2.7e-180	63.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02040 PE=3 SV=...	[more]
B9RZC9_RICCO	2.3e-179	63.72	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938170 PE=3 SV=1	[more]
A0A0G2T403_9ROSI	5.6e-170	60.89	Cytochrome c biogenesis protein OS=Francoa sonchifolia GN=ccs1 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g08360 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49380.1	7.5e-134	51.11	cytochrome c biogenesis protein family	[more]

BLAST of Cp4.1LG04g08360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109781\|ref\|XP_008454876.1\|	2.0e-221	75.77	PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Cucumis melo]	[more]
gi\|778725296\|ref\|XP_011658930.1\|	4.9e-212	73.60	PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Cucumis sativus]	[more]
gi\|802539068\|ref\|XP_012069488.1\|	1.0e-180	64.63	PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic isoform X1 [Jatro...	[more]
gi\|225428564\|ref\|XP_002281077.1\|	3.8e-180	63.79	PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Vitis vinifera]	[more]
gi\|255556127\|ref\|XP_002519098.1\|	3.2e-179	63.72	PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic isoform X1 [Ricin...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007816	ResB-like_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0030154	cell differentiation
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0044723	single-organism carbohydrate metabolic process
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g08360.1	Cp4.1LG04g08360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007816	ResB-like domain	PFAM	PF05140	ResB	coord: 113..329 score: 3.3E-38coord: 378..459 score: 1.8
None	No IPR available	PANTHER	PTHR31566	FAMILY NOT NAMED	coord: 61..471 score: 3.4E
None	No IPR available	PANTHER	PTHR31566:SF0	CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC	coord: 61..471 score: 3.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g08360	CmaCh11G017830	Cucurbita maxima (Rimu)	cmacpeB154
Cp4.1LG04g08360	CmoCh11G013230	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g08360	Cla015962	Watermelon (97103) v1	cpewmB665
Cp4.1LG04g08360	MELO3C018406	Melon (DHL92) v3.5.1	cpemeB604
Cp4.1LG04g08360	ClCG02G005320	Watermelon (Charleston Gray)	cpewcgB590
Cp4.1LG04g08360	Lsi11G010610	Bottle gourd (USVL1VR-Ls)	cpelsiB533
Cp4.1LG04g08360	MELO3C018406.2	Melon (DHL92) v3.6.1	cpemedB715
Cp4.1LG04g08360	Bhi05G001047	Wax gourd	cpewgoB0855
Cp4.1LG04g08360	Carg26484	Silver-seed gourd	carcpeB0932

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g08360	Silver-seed gourd	carcpeB0296
Cp4.1LG04g08360	Cucumber (Chinese Long) v3	cpecucB0835
Cp4.1LG04g08360	Cucumber (Chinese Long) v3	cpecucB0868
Cp4.1LG04g08360	Wax gourd	cpewgoB0864
Cp4.1LG04g08360	Cucurbita pepo (Zucchini)	cpecpeB269
Cp4.1LG04g08360	Cucurbita pepo (Zucchini)	cpecpeB500
Cp4.1LG04g08360	Cucumber (Gy14) v1	cgycpeB0602
Cp4.1LG04g08360	Cucurbita maxima (Rimu)	cmacpeB539
Cp4.1LG04g08360	Cucurbita moschata (Rifu)	cmocpeB494
Cp4.1LG04g08360	Wild cucumber (PI 183967)	cpecpiB671
Cp4.1LG04g08360	Wild cucumber (PI 183967)	cpecpiB697
Cp4.1LG04g08360	Cucumber (Chinese Long) v2	cpecuB668
Cp4.1LG04g08360	Cucumber (Chinese Long) v2	cpecuB695
Cp4.1LG04g08360	Bottle gourd (USVL1VR-Ls)	cpelsiB525
Cp4.1LG04g08360	Cucumber (Gy14) v2	cgybcpeB237
Cp4.1LG04g08360	Cucumber (Gy14) v2	cgybcpeB969
Cp4.1LG04g08360	Melon (DHL92) v3.6.1	cpemedB746