Cp4.1LG04g03600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 7148805 .. 7149676 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCACCACTTTTCCCGCCTGTCCCCGCTCAATCCTCCACCTCCCGCCCACCCCACACTCCATAAATCCCCAAACCCCAATCTCCAATTTTCCTCATCCCAATCCCCTTCTTCCCTTCCAATTTCCGGCAACATGAATCGAAGATCCAGAGCGTTTTCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCTGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGCGTCAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTTTCGCCGCCGACTGCACCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGAATAGTGTTGATGTGTCGACGAATGGAATAGTTTTGAACCTTGTGAATCGATGTTTTCGTTGTGAATTTCATATCAATGTGTAATACATGATACCTTTTGTAGGTACTCGTTGATGAGTTCTGTGAAAATTTTTCTTGATATTAACGGAATTGATATAATAAGATCTCTCATATTTTCGATCTATTGTGCTTGAGACTTCAAGTAGGGCTTTTTCTACTTAATTTTTGGTCAATATATTTGGGATTCTATTGAACTACTCTAATCTAGGTCTCATTTTGGACCTTAAAGCTTGGGGATTATGTTGAACTTCTGACCGAACTTCACATTGACTTCAAACTGAACTCAACTCTAGTCTACGAC

mRNA sequence

TCCACCACTTTTCCCGCCTGTCCCCGCTCAATCCTCCACCTCCCGCCCACCCCACACTCCATAAATCCCCAAACCCCAATCTCCAATTTTCCTCATCCCAATCCCCTTCTTCCCTTCCAATTTCCGGCAACATGAATCGAAGATCCAGAGCGTTTTCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCTGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGCGTCAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTTTCGCCGCCGACTGCACCGATCGACTCCGCTTTGCTTCAGGTCTCATTTTGGACCTTAAAGCTTGGGGATTATGTTGAACTTCTGACCGAACTTCACATTGACTTCAAACTGAACTCAACTCTAGTCTACGAC

Coding sequence (CDS)

ATGAATCGAAGATCCAGAGCGTTTTCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCTGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGCGTCAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTTTCGCCGCCGACTGCACCGATCGACTCCGCTTTGCTTCAGGTCTCATTTTGGACCTTAAAGCTTGGGGATTATGTTGAACTTCTGACCGAACTTCACATTGACTTCAAACTGAACTCAACTCTAGTCTACGAC

Protein sequence

MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPPTAPIDSALLQVSFWTLKLGDYVELLTELHIDFKLNSTLVYD
Homology
[Close]
BLAST of Cp4.1LG04g03600 vs. TrEMBL
Match: A0A0A0K3K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043610 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS      +P 
Sbjct: 1  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS------APS 60

Query: 61 TAPIDSALLQVS 73
          + PIDSALLQV+
Sbjct: 61 SLPIDSALLQVN 63

[Close]
BLAST of Cp4.1LG04g03600 vs. TrEMBL
Match: A5C5X4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041943 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-08
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRR R   RSS    E FH+YLKPGALAQ+R+SR+ AR +RV+  SQI+  R+S  SPP
Sbjct: 1  MNRRIRXLHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTS--SPP 60

Query: 61 TAPI 65
          ++P+
Sbjct: 61 SSPL 62

[Close]
BLAST of Cp4.1LG04g03600 vs. TrEMBL
Match: W9RNW7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002813 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.2e-07
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRR+RA  RSS S +E F KYLKPGALA+IR+SR+ AR +R   +SQI  +  SS  PP
Sbjct: 1  MNRRTRAVHRSSPSRTEPFLKYLKPGALARIRDSRISARSHRAIALSQIRLSPPSSPPPP 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]
BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: gi|659110845|ref|XP_008455441.1| (PREDICTED: uncharacterized protein LOC103495597 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL   
Sbjct: 1  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTTSSSL--- 60

Query: 61 TAPIDSALLQVS 73
            PIDS LLQV+
Sbjct: 61 --PIDSGLLQVN 64

[Close]
BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: gi|449453690|ref|XP_004144589.1| (PREDICTED: uncharacterized protein LOC101204134 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSR   RS  S SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS      +P 
Sbjct: 1  MNRRSR---RSGNSQSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS------APS 60

Query: 61 TAPIDSALLQVS 73
          + PIDSALLQV+
Sbjct: 61 SLPIDSALLQVN 63

[Close]
BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: gi|731409720|ref|XP_010657296.1| (PREDICTED: uncharacterized protein LOC104880884 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 6.2e-08
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRR R   RSS    E FH+YLKPGALAQ+R+SR+ AR +RV+  SQI+  R+S  SPP
Sbjct: 1  MNRRIRTLHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTS--SPP 60

Query: 61 TAPI 65
          ++P+
Sbjct: 61 SSPL 62

[Close]
BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: gi|147785392|emb|CAN68680.1| (hypothetical protein VITISV_041943 [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-08
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRR R   RSS    E FH+YLKPGALAQ+R+SR+ AR +RV+  SQI+  R+S  SPP
Sbjct: 1  MNRRIRXLHRSSSKRDEAFHRYLKPGALAQLRDSRISARSHRVDSHSQIHLHRTS--SPP 60

Query: 61 TAPI 65
          ++P+
Sbjct: 61 SSPL 62

[Close]
BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: gi|703130357|ref|XP_010104588.1| (hypothetical protein L484_002813 [Morus notabilis])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRR+RA  RSS S +E F KYLKPGALA+IR+SR+ AR +R   +SQI  +  SS  PP
Sbjct: 1  MNRRTRAVHRSSPSRTEPFLKYLKPGALARIRDSRISARSHRAIALSQIRLSPPSSPPPP 60

Query: 61 T 62
          T
Sbjct: 61 T 61

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3K2_CUCSA1.1e-1676.39Uncharacterized protein OS=Cucumis sativus GN=Csa_7G043610 PE=4 SV=1[more]
A5C5X4_VITVI5.7e-0856.25Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041943 PE=4 SV=1[more]
W9RNW7_9ROSA8.2e-0759.02Uncharacterized protein OS=Morus notabilis GN=L484_002813 PE=4 SV=1[more]
BLAST of Cp4.1LG04g03600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110845|ref|XP_008455441.1|1.5e-1780.56PREDICTED: uncharacterized protein LOC103495597 [Cucumis melo][more]
gi|449453690|ref|XP_004144589.1|1.6e-1676.39PREDICTED: uncharacterized protein LOC101204134 [Cucumis sativus][more]
gi|731409720|ref|XP_010657296.1|6.2e-0856.25PREDICTED: uncharacterized protein LOC104880884 [Vitis vinifera][more]
gi|147785392|emb|CAN68680.1|8.1e-0856.25hypothetical protein VITISV_041943 [Vitis vinifera][more]
gi|703130357|ref|XP_010104588.1|1.2e-0659.02hypothetical protein L484_002813 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03600.1Cp4.1LG04g03600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35495FAMILY NOT NAMEDcoord: 4..67
score: 6.9
NoneNo IPR availablePANTHERPTHR35495:SF1SUBFAMILY NOT NAMEDcoord: 4..67
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03600Cucsa.148540Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03600CmaCh19G009210Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03600CmoCh20G006230Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03600CmoCh11G018980Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03600CmoCh19G009460Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03600Cla007666Watermelon (97103) v1cpewmB666
Cp4.1LG04g03600Csa7G043610Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03600MELO3C018817Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03600ClCG02G001930Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03600CSPI07G03700Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03600Lsi11G014520Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03600MELO3C018817.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03600CsaV3_7G003580Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03600Bhi10G001118Wax gourdcpewgoB0862
Cp4.1LG04g03600Bhi05G001176Wax gourdcpewgoB0852
Cp4.1LG04g03600CsGy7G003350Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03600Carg19171Silver-seed gourdcarcpeB1223
Cp4.1LG04g03600Carg03133Silver-seed gourdcarcpeB0473
Cp4.1LG04g03600Carg19067Silver-seed gourdcarcpeB1015
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g03600Cp4.1LG15g07450Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03600Silver-seed gourdcarcpeB0047
Cp4.1LG04g03600Cucumber (Chinese Long) v3cpecucB0828
Cp4.1LG04g03600Cucumber (Chinese Long) v3cpecucB0855
Cp4.1LG04g03600Cucurbita pepo (Zucchini)cpecpeB304
Cp4.1LG04g03600Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g03600Cucumber (Gy14) v1cgycpeB0113
Cp4.1LG04g03600Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03600Cucurbita maxima (Rimu)cmacpeB574
Cp4.1LG04g03600Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03600Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g03600Wild cucumber (PI 183967)cpecpiB666
Cp4.1LG04g03600Cucumber (Chinese Long) v2cpecuB663
Cp4.1LG04g03600Bottle gourd (USVL1VR-Ls)cpelsiB520
Cp4.1LG04g03600Watermelon (Charleston Gray)cpewcgB598
Cp4.1LG04g03600Watermelon (97103) v1cpewmB672
Cp4.1LG04g03600Melon (DHL92) v3.5.1cpemeB599
Cp4.1LG04g03600Cucumber (Gy14) v2cgybcpeB235
Cp4.1LG04g03600Melon (DHL92) v3.6.1cpemedB710
Cp4.1LG04g03600Melon (DHL92) v3.6.1cpemedB773