Cp4.1LG04g02580 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g02580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 7672609 .. 7672896 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCGCCGCCGTCCGATTCCCCTCCGGCAAGGAGAACCTCCCGCCGCTTTCCCAGAAGCAGTTCCCCCCAATTCCAAAGAAACCCATCACCAGAAGAAGATTGAATCGAAAGCCACTCGCTGATATAACCAATTCCTTTGAAACCTCTGTTCGCTTTAGCTTCGTTCAAGATCATTCCAGCTCTGTTGAATCTGTTTGTTTACAGCTTAATTCCAAGAAGAGGAAGGCTGCTGATGAAATTTGTTCTGGAACTGCTAAATCGCTCAGAATGGGATTTAGATAA

mRNA sequence

ATGGAGTTCGCCGCCGTCCGATTCCCCTCCGGCAAGGAGAACCTCCCGCCGCTTTCCCAGAAGCAGTTCCCCCCAATTCCAAAGAAACCCATCACCAGAAGAAGATTGAATCGAAAGCCACTCGCTGATATAACCAATTCCTTTGAAACCTCTGTTCGCTTTAGCTTCGTTCAAGATCATTCCAGCTCTGTTGAATCTGTTTGTTTACAGCTTAATTCCAAGAAGAGGAAGGCTGCTGATGAAATTTGTTCTGGAACTGCTAAATCGCTCAGAATGGGATTTAGATAA

Coding sequence (CDS)

ATGGAGTTCGCCGCCGTCCGATTCCCCTCCGGCAAGGAGAACCTCCCGCCGCTTTCCCAGAAGCAGTTCCCCCCAATTCCAAAGAAACCCATCACCAGAAGAAGATTGAATCGAAAGCCACTCGCTGATATAACCAATTCCTTTGAAACCTCTGTTCGCTTTAGCTTCGTTCAAGATCATTCCAGCTCTGTTGAATCTGTTTGTTTACAGCTTAATTCCAAGAAGAGGAAGGCTGCTGATGAAATTTGTTCTGGAACTGCTAAATCGCTCAGAATGGGATTTAGATAA

Protein sequence

MEFAAVRFPSGKENLPPLSQKQFPPIPKKPITRRRLNRKPLADITNSFETSVRFSFVQDHSSSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR
Homology
[Close]
BLAST of Cp4.1LG04g02580 vs. TrEMBL
Match: A0A0A0KE31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419520 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 1 

Query: 1   MEFAAVRFPSGKENLPPLSQKQFPPIPKKPITRRRLNRKPLADITNSFETSVRFSFVQD- 60
           MEF+AVRF S KENLPP + K +P IPKKP  RRRLNRKPL DITNSFE ++R   +QD 
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 61  HSSSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 96
             +SVESVCLQ NS+KRKA DE+ SGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]
BLAST of Cp4.1LG04g02580 vs. NCBI nr
Match: gi|700192751|gb|KGN47955.1| (hypothetical protein Csa_6G419520 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 1 

Query: 1   MEFAAVRFPSGKENLPPLSQKQFPPIPKKPITRRRLNRKPLADITNSFETSVRFSFVQD- 60
           MEF+AVRF S KENLPP + K +P IPKKP  RRRLNRKPL DITNSFE ++R   +QD 
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 61  HSSSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 96
             +SVESVCLQ NS+KRKA DE+ SGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g02580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g02580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE31_CUCSA1.0e-2770.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419520 PE=4 SV=1[more]
BLAST of Cp4.1LG04g02580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g02580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192751|gb|KGN47955.1|1.5e-2770.83hypothetical protein Csa_6G419520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g02580.1Cp4.1LG04g02580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g02580CmaCh11G019230Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g02580CmoCh11G020040Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g02580Cla016273Watermelon (97103) v1cpewmB633
Cp4.1LG04g02580Csa6G419520Cucumber (Chinese Long) v2cpecuB683
Cp4.1LG04g02580MELO3C014425Melon (DHL92) v3.5.1cpemeB634
Cp4.1LG04g02580ClCG09G011320Watermelon (Charleston Gray)cpewcgB579
Cp4.1LG04g02580CSPI06G22530Wild cucumber (PI 183967)cpecpiB687
Cp4.1LG04g02580Lsi11G016850Bottle gourd (USVL1VR-Ls)cpelsiB531
Cp4.1LG04g02580MELO3C014425.2Melon (DHL92) v3.6.1cpemedB758
Cp4.1LG04g02580CsaV3_6G037630Cucumber (Chinese Long) v3cpecucB0854
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g02580Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG04g02580Cucurbita pepo (Zucchini)cpecpeB306
Cp4.1LG04g02580Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g02580Cucumber (Gy14) v1cgycpeB0511
Cp4.1LG04g02580Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g02580Cucurbita maxima (Rimu)cmacpeB573
Cp4.1LG04g02580Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g02580Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g02580Cucurbita moschata (Rifu)cmocpeB524
Cp4.1LG04g02580Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g02580Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g02580Bottle gourd (USVL1VR-Ls)cpelsiB523
Cp4.1LG04g02580Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g02580Watermelon (Charleston Gray)cpewcgB622
Cp4.1LG04g02580Watermelon (97103) v1cpewmB637
Cp4.1LG04g02580Watermelon (97103) v1cpewmB651
Cp4.1LG04g02580Watermelon (97103) v1cpewmB668
Cp4.1LG04g02580Cucumber (Gy14) v2cgybcpeB838
Cp4.1LG04g02580Silver-seed gourdcarcpeB0047
Cp4.1LG04g02580Silver-seed gourdcarcpeB0547
Cp4.1LG04g02580Silver-seed gourdcarcpeB0754
Cp4.1LG04g02580Wax gourdcpewgoB0854
Cp4.1LG04g02580Wax gourdcpewgoB0865