Cp4.1LG04g01670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g01670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG04 : 484420 .. 489163 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCACGCCAACGAACCGGGATTCAACCTCACCACAAATCGTTAGAACAGATAGATGGTTGCGGCTGCGAGGAGACGGCGAATCGTTGCTGGTAATTGCCGACTGATATTTTGGGGTTCATTCAAAAGATAAACACGGGCTGCCTAATGATATGGAGGTAGTAGACATCTTTTTGCTGGAATTTTTCTGTGCAATTTGTTAGCTGGGTATTCTTCGGTATGGCTTTCGGTTTATAAAAATCATTTACTTATTTATTTTTGTTCATTATACTTGGGAATTACTGCCTTCCACTGGTGTAGTTAGTAGGATTGAGCTTGTTCTGAGGATGAGCGGATGGATGGATTCTGCCAAAAAGCTTTGCATAACCTTAAAAGCAAACACTTCTAACTAGAAATTCAAAGCATTGCAATGGCTATGTTAAAGCTACCAGTACCAATTAGTAGCCTTGCTCCTGTCAAGTTCACGCCATTTCTATCTAAGTCCAATGAATTGGCTTCTCCTCTCCTGGACCCAATGAAGCTCTTGAAAGTGGCTGCAGATGCCAAAAACTTAAAATTTGGTAGAACAATCCATGCCCATTTGATCATTACCAATCGCCTCCCTGGAGACTGCAGGGTAAACCAAATTAATTCTCTTATTAATTTGTATGTGAAATGTGATGAACTATTCATTGCTCGGCAGATGTTCGATAGAATGTCGAAAAGAAATGTGGTTTCTTGGTGTGCTTTAATGGCTGGGTATATGCAAAATGGGAGTCCCTTGGTAGTTTTTGAGCTGTTCAAAAAGATGATAGTGAAGGATAATATTTTCCCCAATGAATATGTGATTGCCACTGTTATATCTTCTTGTCGTGATAGTCAAATGTATGTAGAGGGGAGGCAGTGCCATGGGTTTTCCTTAAAGTCTGGATTGGAGCTTCATCAATATGTTAAGAATGCACTTATTCAGATGTACTCTAAGTGTTCAGATGTAAGAGCAGCATTGAAGATATTAGATACTGTGCCAGGTTATGACGTATTTTGTTATAATTTGGTTCTAAATGGGCTTCTAGAGCATTCACATTTGAGAGAAGCTATAGAAGTTCTGAAGTTAATGATTGATGAAGGCACAAAATGGAATAACGCCACTTTTGTTACGATTTTTCGCATTTGTGCTAGTCTTAAAGATTTACAATTCGGTAAGCATGTTCATGCTCGAATGTTGAAAAGCGATATTGACTACGATGTTTATATCGGAAGTTCTATCATTGATATGTATGGGAAATGTGGTAATGTGTTGAGTGGAAGAGCCTTTTTTGATCAGTTGCAAAACCGAAATGTTGTTTCTTGGACAGCAATCATGGCAGCTTATTTCCAGAATGGATTCTTTGAAGAAGCATTAAATCTGTTTTCAAAGATGGAAATTGATCATATTCCTCCTAATGAATATACACTGGCTGTGTTGTTAAACTCTGCTGCAGGTTTGTCCGCACTAAGCCATGGTGATCAGTTACATGCTCGTGCCGAGAAATCAGGTCTCAAGGGCAATGTTATAGTAGGGAATGCCTTGATCATAATGTATTCCAAGAGTGGGGACATTTTAGCAGCACAACGCGTGTTCTCAAATATGATGTGTTGTGATTCCATTACCTGGAATGCGATAATAACTGGTCACTCTCACCATTGTATCGGTAAGGAAGCGTTGAACATATTCCACGACATGTTGACTGCTCGAGAATGTCCAAATTATGTGACCTTTATTGGTGTTCTTTCTGCTTGTGCCCATTTAAGTTTGGTAGATGAAGGATTGTACTATTTTAACCATTTGATGAAACAATTTGGTATTGTTCCTGGGTTGGAACACTATACCTGCATTGTTGGACTTCTAAGTAGATCTGGACGACTCGATGAAGCTGAGAATTTTATGAGGTCGAATCCAATCAATTGGGACGTTGTTGCATGGCGCACCCTTCTCAATGCTTGTTATGTTCATAGAAATTATGATAAAGGGAAACAAATAGCAGAGTACTTACTACAGATGGATCATGAGGATGTAGGTTCTTATATTCTATTATCAAACATGCATGCGAGAGTTAGGAGATGGGACGGTGTCGTTAAGGTTCGAAAATTGATGAGAGAAAGAAATGTGAAGAAAGAACCTGGAGTGAGCTGGTTAGAAATAAGAAATATTGCCCATGTTTTTACATCCGAAGATAATAAACACCCCGAGTCGAGTCAGATTTATGAAATGGTAAGGGACTTGTTAACCAAGATTCGACCATTGGGGTATGTTCCTGATATTGCTGGTGTTTTGCACGATATTGAGGATGAGCAAAAGCTCGACAATCTTAGCTATCATAGCGAGAAGCTTGCCGTAGCATATGGCCTGATGAAATCACCATCAGGTGCACCGATTCGGGTGATTAAGAACCTTAGGATGTGCGATGATTGTCACACTGCTATCAAACTTATTTCAAAGCTTGCAAATAGGACTATAATTGTTAGAGATGCCAACCGTTTCCATCATTTTCAAGATGGTTTTTGCTCGTGTGGAGATTATTGGTGAAATTTTCGATAAGTTTCTCAATGGCTTGAATGTTTTGATGATAAAACGTTTCAAGCCATGATTCTGTGGTAGCAGAGATATCAACATACTCTACTATTTCAGGCTGGTATTAGGCACACATGACACAAGTTGAGCCGACTAGGTCTGCACGTTGGGTATGTGAGTTGTCAATACCAGTTTTCTTATATTTTCATTTTTCTTAATATCTACCGATGTCATTTAATATTTCAACTGGTTTTATAACGACCCAAGTCCACCGCTAGTAGATATTGTCCTCTTTGAGCTTTCCCTTTCGGACTTCTCTTCAAGGTTTATAAAACGTATCTTCAAGGGAGAGGTTTCCACACCCTTATAAAAAAATGTTTCGTTCTCCTCCCCAATCGATGTGGGATCTCACAATCTACCCTCTTTCAGGGCCCAACGTTTTCGCTGACTCTTGTTTCTTTCTCCAATCGATGTGGGATCCCCAATCCACCCCCCTTCGGGGCCTAGCGTCCTTATTGGCACACCGCCTCTTGTCCACCCCCTTCGAGGCTTAGCTTTCCTCGCTGTCCCATCGCTCGATGTCTAGCTCTGATACCATTTGTAACGGCCCAAGCCCACTGCTAGCAGATATTGTCCTTTTAGGCTTTACCTTTCGGGCTTCCCCTCATAGTTTTTAAAACGCGTCTTCAAGGTAGAGGTTCCTACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGATATAGGATCTCGCAGGTTTCTACTTTTCCCGTGGTTGAACATGTAGCTATTTGGTTGGGGTGACTCTAGACAACTTGATTAATTGGAAGATTACATCTCTGCCTACAGTCTATGGTGGGCTTGTATGGACTCCCTCCCACCAAAGAAATACTTCATTCTTACAACAGTGGCACGGCAGTTCAACCAAGAAAGGAAGTCCTTTGGGAGGAGGGTGATTATGGCTATGACTTGAATGGCTCATCGACTAAGAGACAAAAATGATAGATTGATCTCTGGATTTGCCTCCCTAAAAAGGCCGAAGATTGGCTGCTTGAGGCTGTGATGGGAACCTGTTTTAGAGGCAAAGCTAATATCCTTGGGGCTGTGCGTTAAAGCTACTTTATGGTTAACTTGAAAGGAGCATAATCTTCTTTTGGTTATACAACGCTTGTTGGAATGCATAATCTTAGTATCTGAGGCTGAATGTGCAGTAGCAGCAGGAGTTATGAGCTGTTGGAATGATTTGGTTCAGTAGTTTATGACAAAGTATTTTCTGCTCTCAAAGATTGCCAAAAGCTAAATCACTTCATTCATTCTAGCAGTGGGAGGAGGAATCCCTACATGAAACTTGAGAGAGGCTCAAAGAATGCTTGCGAAACTGCCTGAATCATGGTATTCAAATACAGACCTTATACAATGGTTGCCAACACTTGAACGGTTGCTTCAATTGAGGGGCACTTTTCTCCCAGACTTAAAAAGTGTGTGGAAGCTCTCTCTAATAGATATATTTTAAAATCTCGAGGTGAAGCTAGTGATAGGCTTGTAATGACTAATAATTTTTCTGAAATGCATGTGACTAACAAAGTAGGCTGGAAGAGCTTATGTTGGTATGTAGAGATAACTTTTACTTCTAGAAGCGAGGAATAAATAATGTGACTAATGTTGTAGGAGATGTAAGAGAATGTCGGAGTAGGAGACTTGAGTGTCATCCAATCCCATCACATCCCAACAAGATCGAAAGTTCACTTTACACAAACTGTATTTCCCTTGCATTTTGGTTAAAAGGACACAACATTGACCTCTCCTTGCCTGACTGCTCAGTTCTGTCCTGTCCTATAAGCTCTGTAAAAAGCCTAACAATCATTTAATACATTGAACTGCTTTATTAGAACCACTCTCAATCCCACAAAATCTTCTCAAAATTTTAAACTTTTTGGAGTGTTTCAGTTTCCATTTCCCTTCATAAACTCCATTGGTCCTTCTCCTGTCCACCAATCCTCTTCTTCTTCCTTCTTTCTCCCTTGCCTTTTCTTGCCAAAGCCCTCTCTTTTTCTCTTAATTCTCTGCTTCTCATCATTTGACAGTTTCTGTTTATATGTATATGTATATATATATATATATGTATTTATGCTACTTTTCATCAAAGCTCTTGCATGTGGGAAGGAGGCTTCAAAGTAGTGCAGCCAAGGATGACTTGCCGGCAACCATTTAA

mRNA sequence

AACCCACGCCAACGAACCGGGATTCAACCTCACCACAAATCGTTAGAACAGATAGATGGTTGCGGCTGCGAGGAGACGGCGAATCGTTGCTGGTAATTGCCGACTGATATTTTGGGGTTCATTCAAAAGATAAACACGGGCTGCCTAATGATATGGAGCTACCAGTACCAATTAGTAGCCTTGCTCCTGTCAAGTTCACGCCATTTCTATCTAAGTCCAATGAATTGGCTTCTCCTCTCCTGGACCCAATGAAGCTCTTGAAAGTGGCTGCAGATGCCAAAAACTTAAAATTTGGTAGAACAATCCATGCCCATTTGATCATTACCAATCGCCTCCCTGGAGACTGCAGGGTAAACCAAATTAATTCTCTTATTAATTTGTATGTGAAATGTGATGAACTATTCATTGCTCGGCAGATGTTCGATAGAATGTCGAAAAGAAATGTGGTTTCTTGGTGTGCTTTAATGGCTGGGTATATGCAAAATGGGAGTCCCTTGGTAGTTTTTGAGCTGTTCAAAAAGATGATAGTGAAGGATAATATTTTCCCCAATGAATATGTGATTGCCACTGTTATATCTTCTTGTCGTGATAGTCAAATGTATGTAGAGGGGAGGCAGTGCCATGGGTTTTCCTTAAAGTCTGGATTGGAGCTTCATCAATATGTTAAGAATGCACTTATTCAGATGTACTCTAAGTGTTCAGATGTAAGAGCAGCATTGAAGATATTAGATACTGTGCCAGGTTATGACGTATTTTGTTATAATTTGGTTCTAAATGGGCTTCTAGAGCATTCACATTTGAGAGAAGCTATAGAAGTTCTGAAGTTAATGATTGATGAAGGCACAAAATGGAATAACGCCACTTTTGTTACGATTTTTCGCATTTGTGCTAGTCTTAAAGATTTACAATTCGGTAAGCATGTTCATGCTCGAATGTTGAAAAGCGATATTGACTACGATGTTTATATCGGAAGTTCTATCATTGATATGTATGGGAAATGTGGTAATGTGTTGAGTGGAAGAGCCTTTTTTGATCAGTTGCAAAACCGAAATGTTGTTTCTTGGACAGCAATCATGGCAGCTTATTTCCAGAATGGATTCTTTGAAGAAGCATTAAATCTGTTTTCAAAGATGGAAATTGATCATATTCCTCCTAATGAATATACACTGGCTGTGTTGTTAAACTCTGCTGCAGGTTTGTCCGCACTAAGCCATGGTGATCAGTTACATGCTCGTGCCGAGAAATCAGGTCTCAAGGGCAATGTTATAGTAGGGAATGCCTTGATCATAATGTATTCCAAGAGTGGGGACATTTTAGCAGCACAACGCCTCTTGCATGTGGGAAGGAGGCTTCAAAGTAGTGCAGCCAAGGATGACTTGCCGGCAACCATTTAA

Coding sequence (CDS)

ATGGAGCTACCAGTACCAATTAGTAGCCTTGCTCCTGTCAAGTTCACGCCATTTCTATCTAAGTCCAATGAATTGGCTTCTCCTCTCCTGGACCCAATGAAGCTCTTGAAAGTGGCTGCAGATGCCAAAAACTTAAAATTTGGTAGAACAATCCATGCCCATTTGATCATTACCAATCGCCTCCCTGGAGACTGCAGGGTAAACCAAATTAATTCTCTTATTAATTTGTATGTGAAATGTGATGAACTATTCATTGCTCGGCAGATGTTCGATAGAATGTCGAAAAGAAATGTGGTTTCTTGGTGTGCTTTAATGGCTGGGTATATGCAAAATGGGAGTCCCTTGGTAGTTTTTGAGCTGTTCAAAAAGATGATAGTGAAGGATAATATTTTCCCCAATGAATATGTGATTGCCACTGTTATATCTTCTTGTCGTGATAGTCAAATGTATGTAGAGGGGAGGCAGTGCCATGGGTTTTCCTTAAAGTCTGGATTGGAGCTTCATCAATATGTTAAGAATGCACTTATTCAGATGTACTCTAAGTGTTCAGATGTAAGAGCAGCATTGAAGATATTAGATACTGTGCCAGGTTATGACGTATTTTGTTATAATTTGGTTCTAAATGGGCTTCTAGAGCATTCACATTTGAGAGAAGCTATAGAAGTTCTGAAGTTAATGATTGATGAAGGCACAAAATGGAATAACGCCACTTTTGTTACGATTTTTCGCATTTGTGCTAGTCTTAAAGATTTACAATTCGGTAAGCATGTTCATGCTCGAATGTTGAAAAGCGATATTGACTACGATGTTTATATCGGAAGTTCTATCATTGATATGTATGGGAAATGTGGTAATGTGTTGAGTGGAAGAGCCTTTTTTGATCAGTTGCAAAACCGAAATGTTGTTTCTTGGACAGCAATCATGGCAGCTTATTTCCAGAATGGATTCTTTGAAGAAGCATTAAATCTGTTTTCAAAGATGGAAATTGATCATATTCCTCCTAATGAATATACACTGGCTGTGTTGTTAAACTCTGCTGCAGGTTTGTCCGCACTAAGCCATGGTGATCAGTTACATGCTCGTGCCGAGAAATCAGGTCTCAAGGGCAATGTTATAGTAGGGAATGCCTTGATCATAATGTATTCCAAGAGTGGGGACATTTTAGCAGCACAACGCCTCTTGCATGTGGGAAGGAGGCTTCAAAGTAGTGCAGCCAAGGATGACTTGCCGGCAACCATTTAA

Protein sequence

MELPVPISSLAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSGDILAAQRLLHVGRRLQSSAAKDDLPATI

Homology

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BLAST of Cp4.1LG04g01670 vs. Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=1 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.0e-88
Identity = 171/379 (45.12%), Postives = 236/379 (62.27%), Query Frame = 1


Query: 14  KFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSL 73
           K    + KS +   P+    +LLKV A++  L+ G +IHAHLI+TN+        QINSL
Sbjct: 16  KLASLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSL 75

Query: 74  INLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPN 133
           INLYVKC E   AR++FD M +RNVVSWCA+M GY  +G    V +LFK M       PN
Sbjct: 76  INLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPN 135

Query: 134 EYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILD 193
           E+V   V  SC +S    EG+Q HG  LK GL  H++V+N L+ MYS CS    A+++LD
Sbjct: 136 EFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLD 195

Query: 194 TVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQF 253
            +P  D+  ++  L+G LE    +E ++VL+   +E   WNN T+++  R+ ++L+DL  
Sbjct: 196 DLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNL 255

Query: 254 GKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQ 313
              VH+RM++   + +V    ++I+MYGKCG VL  +  FD    +N+   T IM AYFQ
Sbjct: 256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQ 315

Query: 314 NGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIV 373
           +  FEEALNLFSKM+   +PPNEYT A+LLNS A LS L  GD LH    KSG + +V+V
Sbjct: 316 DKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMV 375

Query: 374 GNALIIMYSKSGDILAAQR 393
           GNAL+ MY+KSG I  A++
Sbjct: 376 GNALVNMYAKSGSIEDARK 394

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BLAST of Cp4.1LG04g01670 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.7e-54
Identity = 114/357 (31.93%), Postives = 205/357 (57.42%), Query Frame = 1


Query: 35  LLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMS 94
           LLKV  D   L+ G+ IH  L++ +    D  +  +  L N+Y KC ++  AR++FDRM 
Sbjct: 141 LLKVCGDEAELRVGKEIHG-LLVKSGFSLD--LFAMTGLENMYAKCRQVNEARKVFDRMP 200

Query: 95  KRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQMYVEGR 154
           +R++VSW  ++AGY QNG   +  E+ K M  ++N+ P+   I +V+ +    ++   G+
Sbjct: 201 ERDLVSWNTIVAGYSQNGMARMALEMVKSMC-EENLKPSFITIVSVLPAVSALRLISVGK 260

Query: 155 QCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNGLLEHS 214
           + HG++++SG +    +  AL+ MY+KC  +  A ++ D +   +V  +N +++  +++ 
Sbjct: 261 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 320

Query: 215 HLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKSDIDYDVYIGS 274
           + +EA+ + + M+DEG K  + + +     CA L DL+ G+ +H   ++  +D +V + +
Sbjct: 321 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVN 380

Query: 275 SIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEIDHIPP 334
           S+I MY KC  V +  + F +LQ+R +VSW A++  + QNG   +ALN FS+M    + P
Sbjct: 381 SLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKP 440

Query: 335 NEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSGDILAAQ 392
           + +T   ++ + A LS   H   +H    +S L  NV V  AL+ MY+K G I+ A+
Sbjct: 441 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493

[Close]

BLAST of Cp4.1LG04g01670 vs. Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-53
Identity = 113/344 (32.85%), Postives = 190/344 (55.23%), Query Frame = 1


Query: 45  LKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCAL 104
           L+ G+ IHAH++   R   +   + +N LI+ YVKC  +  A ++F+ M  +N++SW  L
Sbjct: 265 LEGGKQIHAHIL---RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTL 324

Query: 105 MAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSG 164
           ++GY QN       ELF  M  K  + P+ Y  +++++SC        G Q H +++K+ 
Sbjct: 325 LSGYKQNALHKEAMELFTSMS-KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKAN 384

Query: 165 LELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNG---LLEHSHLREAIE 224
           L    YV N+LI MY+KC  +  A K+ D     DV  +N ++ G   L     L EA+ 
Sbjct: 385 LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALN 444

Query: 225 VLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYG 284
           + + M     + +  TFV++ R  ASL  L   K +H  M K  ++ D++ GS++ID+Y 
Sbjct: 445 IFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYS 504

Query: 285 KCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAV 344
            C  +   R  FD+++ +++V W ++ A Y Q    EEALNLF ++++    P+E+T A 
Sbjct: 505 NCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFAN 564

Query: 345 LLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSG 386
           ++ +A  L+++  G + H +  K GL+ N  + NAL+ MY+K G
Sbjct: 565 MVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG 604

[Close]

BLAST of Cp4.1LG04g01670 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.4e-51
Identity = 105/316 (33.23%), Postives = 184/316 (58.23%), Query Frame = 1


Query: 71  NSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNI 130
           N+LI+  V+  +L  AR++FD M ++N V+W A++ GY++ G     F LF+  +     
Sbjct: 121 NNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIR 180

Query: 131 FPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALK 190
           F NE +   +++ C     +  GRQ HG  +K G+  +  V+++L+  Y++C ++ +AL+
Sbjct: 181 FTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALR 240

Query: 191 ILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKD 250
             D +   DV  +  V++      H  +AI +   M++     N  T  +I + C+  K 
Sbjct: 241 AFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKA 300

Query: 251 LQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAA 310
           L+FG+ VH+ ++K  I  DV++G+S++DMY KCG +   R  FD + NRN V+WT+I+AA
Sbjct: 301 LRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 360

Query: 311 YFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGN 370
           + + GF EEA++LF  M+  H+  N  T+  +L +   + AL  G +LHA+  K+ ++ N
Sbjct: 361 HAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 420

Query: 371 VIVGNALIIMYSKSGD 387
           V +G+ L+ +Y K G+
Sbjct: 421 VYIGSTLVWLYCKCGE 435

[Close]

BLAST of Cp4.1LG04g01670 vs. Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 8.4e-51
Identity = 121/364 (33.24%), Postives = 204/364 (56.04%), Query Frame = 1


Query: 35  LLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMS 94
           LLK  AD ++++ G+ IHAH+       G   V   N+L+NLY KC +     ++FDR+S
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGY--GVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS 162

Query: 95  KRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQM---YV 154
           +RN VSW +L++         +  E F+ M+  +N+ P+ + + +V+++C +  M    +
Sbjct: 163 ERNQVSWNSLISSLCSFEKWEMALEAFRCML-DENVEPSSFTLVSVVTACSNLPMPEGLM 222

Query: 155 EGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNGLL 214
            G+Q H + L+ G EL+ ++ N L+ MY K   + ++  +L +  G D+  +N VL+ L 
Sbjct: 223 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 282

Query: 215 EHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKS-DIDYDV 274
           ++  L EA+E L+ M+ EG + +  T  ++   C+ L+ L+ GK +HA  LK+  +D + 
Sbjct: 283 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 342

Query: 275 YIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEID 334
           ++GS+++DMY  C  VLSGR  FD + +R +  W A++A Y QN   +EAL LF  ME  
Sbjct: 343 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 402

Query: 335 -HIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSGDILA 394
             +  N  T+A ++ +     A S  + +H    K GL  +  V N L+ MYS+ G I  
Sbjct: 403 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 462

[Close]

BLAST of Cp4.1LG04g01670 vs. TrEMBL
Match: A0A0A0KR26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292190 PE=4 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 7.3e-179
Identity = 314/389 (80.72%), Postives = 352/389 (90.49%), Query Frame = 1


Query: 3   LPVPISSLAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLP 62
           L +PI+ + PVKFTPFLS+SN LASP  DP+KLLKVAADAKNLKFGRTIHAHL ITN   
Sbjct: 4   LKLPITDIMPVKFTPFLSRSNFLASPHQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNY 63

Query: 63  GDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFK 122
            D +VNQ+NSLINLYVKCDE+ IAR++FD M +RNVVSW ALMAGYMQNG+PL VFELFK
Sbjct: 64  RDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFK 123

Query: 123 KMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKC 182
           KM+VKDNIFPNEYVIAT ISSC DSQMYVEG+QCHG++LKSGLE HQYVKNALIQ+YSKC
Sbjct: 124 KMVVKDNIFPNEYVIATAISSC-DSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKC 183

Query: 183 SDVRAALKILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIF 242
           SDV AA++IL TVPG D+FCYNLV+NGLL+H+H+ EA++VLKL+I EG +WNNAT+VTIF
Sbjct: 184 SDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIF 243

Query: 243 RICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVV 302
           R+CASLKD+  GK VHA+MLKSDID DVYIGSSIIDMYGKCGNVLSGR FFD+LQ+RNVV
Sbjct: 244 RLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVV 303

Query: 303 SWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARA 362
           SWT+I+AAYFQN FFEEALNLFSKMEID IPPNEYT+AVL NSAAGLSAL  GDQLHARA
Sbjct: 304 SWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARA 363

Query: 363 EKSGLKGNVIVGNALIIMYSKSGDILAAQ 392
           EKSGLKGNV+VGNALIIMY KSGDILAAQ
Sbjct: 364 EKSGLKGNVMVGNALIIMYFKSGDILAAQ 391

[Close]

BLAST of Cp4.1LG04g01670 vs. TrEMBL
Match: M5WY68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015390mg PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.6e-125
Identity = 223/374 (59.63%), Postives = 278/374 (74.33%), Query Frame = 1


Query: 17  PFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINL 76
           PFL K   +   + DP+KLLK AAD KNL+ G+T+HAHLI+++       +   NSLINL
Sbjct: 13  PFLFKPKVIPGSIEDPIKLLKKAADTKNLRLGKTVHAHLILSSETSKFLDIFHANSLINL 72

Query: 77  YVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYV 136
           Y KCD +  AR +F+ M KRNVVSW ALMAGY+  G  L V  LFK M+  DN+ PNE+V
Sbjct: 73  YAKCDRITTARHLFECMPKRNVVSWTALMAGYLHKGLTLEVLGLFKTMVSVDNLCPNEFV 132

Query: 137 IATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVP 196
            ATV+SSC  S    EG+QCHG+ LKSGL  +QYVKNAL+ MYS CS+V AA+++L+TVP
Sbjct: 133 FATVLSSCSGSGRVEEGKQCHGYVLKSGLLSYQYVKNALVHMYSSCSEVEAAMRVLNTVP 192

Query: 197 GYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKH 256
           G D+  YN V+NGLLEH H++EA+++L +MI +   W+N T++TIF +CA LKDL+ G  
Sbjct: 193 GDDILSYNSVVNGLLEHGHVKEAMDILDMMIGQCKAWDNVTYITIFGVCAHLKDLRLGLQ 252

Query: 257 VHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGF 316
           VH++MLK+DID DV++ S++IDMYGKCG VL+    FD LQ RN+VSWTAIMAAYFQNG 
Sbjct: 253 VHSQMLKTDIDCDVFLSSAMIDMYGKCGKVLNALKVFDGLQTRNIVSWTAIMAAYFQNGC 312

Query: 317 FEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNA 376
           FEEAL L S+ME + I PNEYT AVLLNS AGLSAL HGD LHA  EKSG K + IVGNA
Sbjct: 313 FEEALGLLSQMEFEDILPNEYTFAVLLNSCAGLSALRHGDLLHASVEKSGFKDHAIVGNA 372

Query: 377 LIIMYSKSGDILAA 391
           L+ MYSK G+I AA
Sbjct: 373 LVNMYSKCGNIQAA 386

[Close]

BLAST of Cp4.1LG04g01670 vs. TrEMBL
Match: W9R0I6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013582 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.7e-119
Identity = 212/371 (57.14%), Postives = 278/371 (74.93%), Query Frame = 1


Query: 23  NELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDE 82
           ++L S + DP++LLK+AAD KNLK G+ IHAH+++T+++     + Q NSLINLY KC  
Sbjct: 9   DKLFSLVEDPVRLLKLAADNKNLKVGKQIHAHVVVTDKVSSHSNLVQTNSLINLYEKCGR 68

Query: 83  LFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVIS 142
           L +ARQ+FD M  RNVVSW +LMAGY+  G  L V  LFK M+  D   PNE+V+ TV+S
Sbjct: 69  LSVARQLFDSMRLRNVVSWSSLMAGYLHEGLALEVLGLFKSMVSADYNRPNEFVLTTVLS 128

Query: 143 SCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFC 202
           SC DS    EG+QCHG+ LKSGL  HQ+VKNAL+ MY +CSDV+ A+++  TVPGYDVF 
Sbjct: 129 SCSDSVRVEEGKQCHGYVLKSGLVFHQHVKNALVHMYLRCSDVKGAMRVFSTVPGYDVFS 188

Query: 203 YNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARML 262
           YN VL+GLLE  HL+EA EVL+L++ E   W++ T+VT+F + +SL+ L+ G  VH RML
Sbjct: 189 YNSVLDGLLEEGHLKEATEVLRLIMREDVVWDSVTYVTVFGLSSSLRILRLGLQVHCRML 248

Query: 263 KSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALN 322
           K+DI+ D ++ S+I+DMYGKCG +++    F+ L+NR VVSWT IMAAYFQNG+FEEA N
Sbjct: 249 KTDIESDAFVNSAIMDMYGKCGKLVNAVNIFEHLRNRTVVSWTTIMAAYFQNGYFEEAFN 308

Query: 323 LFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYS 382
           LF KM+++ + PNEYT AVLLNS+A LSAL  G  LHA A+KSG K +VIVGNALI MY+
Sbjct: 309 LFVKMKLEDVSPNEYTFAVLLNSSASLSALRRGALLHACADKSGFKDHVIVGNALINMYA 368

Query: 383 KSGDILAAQRL 394
           KSG+I AA  +
Sbjct: 369 KSGNIEAANEV 379

[Close]

BLAST of Cp4.1LG04g01670 vs. TrEMBL
Match: B9IJZ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12110g PE=4 SV=2)

HSP 1 Score: 423.7 bits (1088), Expect = 2.6e-115
Identity = 210/383 (54.83%), Postives = 276/383 (72.06%), Query Frame = 1


Query: 12  PVKFTPFLSKSNELA-SPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQI 71
           P +  PFL + N ++ S  LD +KLLK++AD KNLK G+TIH+HLI+T+R   +  + ++
Sbjct: 11  PFRHAPFLLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSII-EV 70

Query: 72  NSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNI 131
           NSLIN Y K +++ IA  +FDRM +RNVVSW ALM GY+ NG  L V  L K MI + N+
Sbjct: 71  NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNV 130

Query: 132 FPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALK 191
            PNEY++A  ISSC D     EGRQCHG  LK+G   H YV+NAL+ MYSKCS V+ A+ 
Sbjct: 131 SPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMG 190

Query: 192 ILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKD 251
           + + VP  D+  YN +L+ L+E+ +LRE +EVL+ M+ E  KW+  TFV  F +CASLKD
Sbjct: 191 VWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKD 250

Query: 252 LQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAA 311
           L+ G HVH +ML SD++ D Y+ S+II+MYGKCG  L  R  FD LQ+RNVV WTA+MA+
Sbjct: 251 LRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMAS 310

Query: 312 YFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGN 371
            FQNG FEEALNLFSKME +++  NE+T AVLLN+ AGLSA  +G  LH  +EKSG K +
Sbjct: 311 CFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHH 370

Query: 372 VIVGNALIIMYSKSGDILAAQRL 394
           V+VGNALI MY+KSGDI AA+++
Sbjct: 371 VMVGNALINMYAKSGDIEAAKKV 392

[Close]

BLAST of Cp4.1LG04g01670 vs. TrEMBL
Match: A0A067KMH8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13045 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 3.7e-114
Identity = 211/391 (53.96%), Postives = 277/391 (70.84%), Query Frame = 1


Query: 3   LPVPISSLAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLP 62
           L  P  S  P+ +  +  + N  + P   P+KLLK++AD KNLKFG  IHAHLIITN+  
Sbjct: 2   LKPPRKSHTPLNYPLYPFRPNH-SPPTSSPIKLLKLSADTKNLKFGEIIHAHLIITNQTT 61

Query: 63  GDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFK 122
            +  + ++NSLIN Y KC+E+ IAR++FD M +RNVVSW ALM GY++NG  L V  L K
Sbjct: 62  QNNAI-EVNSLINFYAKCNEVSIARKLFDNMLQRNVVSWSALMTGYLRNGFSLEVIRLLK 121

Query: 123 KMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKC 182
            MI+ DN+ PNEY+ A  ++SC DS    EG+QCH + LKSGL  HQYV+NAL+ MYSK 
Sbjct: 122 DMILDDNVSPNEYIFAIALASCSDSGRVKEGQQCHSYVLKSGLVFHQYVRNALLHMYSKS 181

Query: 183 SDVRAALKILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIF 242
             V+  +++ + VPG DVF YN VL+G LE+ +L+E ++VL  M+ E  KWN+ T+V +F
Sbjct: 182 YTVKETMRVWNLVPGNDVFGYNSVLSGFLENGYLKEGLDVLSWMVKENVKWNSVTYVNVF 241

Query: 243 RICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVV 302
            +CA LKDL+ G  VH +ML SD + D Y+ S+II+MYGKCG  ++ R  FD+LQ+ NVV
Sbjct: 242 GLCACLKDLRLGLQVHGKMLVSDAECDAYVSSTIINMYGKCGEAVNARKVFDELQSLNVV 301

Query: 303 SWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARA 362
            WT I+AAYFQN  FEEALNLF +M++    PNE+T AVLLN++AGLSAL HG  LHA A
Sbjct: 302 LWTTIIAAYFQNRCFEEALNLFPRMKLVS-TPNEFTFAVLLNASAGLSALRHGHLLHACA 361

Query: 363 EKSGLKGNVIVGNALIIMYSKSGDILAAQRL 394
           EKSG K  VIVGNALI MY+K G+I AA ++
Sbjct: 362 EKSGFKDYVIVGNALINMYAKGGNIQAANKV 389

[Close]

BLAST of Cp4.1LG04g01670 vs. TAIR10
Match: AT5G39680.1 (AT5G39680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 328.6 bits (841), Expect = 5.7e-90
Identity = 171/379 (45.12%), Postives = 236/379 (62.27%), Query Frame = 1


Query: 14  KFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSL 73
           K    + KS +   P+    +LLKV A++  L+ G +IHAHLI+TN+        QINSL
Sbjct: 16  KLASLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSL 75

Query: 74  INLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPN 133
           INLYVKC E   AR++FD M +RNVVSWCA+M GY  +G    V +LFK M       PN
Sbjct: 76  INLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPN 135

Query: 134 EYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILD 193
           E+V   V  SC +S    EG+Q HG  LK GL  H++V+N L+ MYS CS    A+++LD
Sbjct: 136 EFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLD 195

Query: 194 TVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQF 253
            +P  D+  ++  L+G LE    +E ++VL+   +E   WNN T+++  R+ ++L+DL  
Sbjct: 196 DLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNL 255

Query: 254 GKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQ 313
              VH+RM++   + +V    ++I+MYGKCG VL  +  FD    +N+   T IM AYFQ
Sbjct: 256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQ 315

Query: 314 NGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIV 373
           +  FEEALNLFSKM+   +PPNEYT A+LLNS A LS L  GD LH    KSG + +V+V
Sbjct: 316 DKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMV 375

Query: 374 GNALIIMYSKSGDILAAQR 393
           GNAL+ MY+KSG I  A++
Sbjct: 376 GNALVNMYAKSGSIEDARK 394

[Close]

BLAST of Cp4.1LG04g01670 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 213.4 bits (542), Expect = 2.7e-55
Identity = 114/357 (31.93%), Postives = 205/357 (57.42%), Query Frame = 1


Query: 35  LLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMS 94
           LLKV  D   L+ G+ IH  L++ +    D  +  +  L N+Y KC ++  AR++FDRM 
Sbjct: 141 LLKVCGDEAELRVGKEIHG-LLVKSGFSLD--LFAMTGLENMYAKCRQVNEARKVFDRMP 200

Query: 95  KRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQMYVEGR 154
           +R++VSW  ++AGY QNG   +  E+ K M  ++N+ P+   I +V+ +    ++   G+
Sbjct: 201 ERDLVSWNTIVAGYSQNGMARMALEMVKSMC-EENLKPSFITIVSVLPAVSALRLISVGK 260

Query: 155 QCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNGLLEHS 214
           + HG++++SG +    +  AL+ MY+KC  +  A ++ D +   +V  +N +++  +++ 
Sbjct: 261 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 320

Query: 215 HLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKSDIDYDVYIGS 274
           + +EA+ + + M+DEG K  + + +     CA L DL+ G+ +H   ++  +D +V + +
Sbjct: 321 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVN 380

Query: 275 SIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEIDHIPP 334
           S+I MY KC  V +  + F +LQ+R +VSW A++  + QNG   +ALN FS+M    + P
Sbjct: 381 SLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKP 440

Query: 335 NEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSGDILAAQ 392
           + +T   ++ + A LS   H   +H    +S L  NV V  AL+ MY+K G I+ A+
Sbjct: 441 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493

[Close]

BLAST of Cp4.1LG04g01670 vs. TAIR10
Match: AT4G39530.1 (AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-54
Identity = 113/344 (32.85%), Postives = 190/344 (55.23%), Query Frame = 1


Query: 45  LKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCAL 104
           L+ G+ IHAH++   R   +   + +N LI+ YVKC  +  A ++F+ M  +N++SW  L
Sbjct: 265 LEGGKQIHAHIL---RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTL 324

Query: 105 MAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSG 164
           ++GY QN       ELF  M  K  + P+ Y  +++++SC        G Q H +++K+ 
Sbjct: 325 LSGYKQNALHKEAMELFTSMS-KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKAN 384

Query: 165 LELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNG---LLEHSHLREAIE 224
           L    YV N+LI MY+KC  +  A K+ D     DV  +N ++ G   L     L EA+ 
Sbjct: 385 LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALN 444

Query: 225 VLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYG 284
           + + M     + +  TFV++ R  ASL  L   K +H  M K  ++ D++ GS++ID+Y 
Sbjct: 445 IFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYS 504

Query: 285 KCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAV 344
            C  +   R  FD+++ +++V W ++ A Y Q    EEALNLF ++++    P+E+T A 
Sbjct: 505 NCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFAN 564

Query: 345 LLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSG 386
           ++ +A  L+++  G + H +  K GL+ N  + NAL+ MY+K G
Sbjct: 565 MVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG 604

[Close]

BLAST of Cp4.1LG04g01670 vs. TAIR10
Match: AT4G18520.1 (AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 203.0 bits (515), Expect = 3.6e-52
Identity = 105/316 (33.23%), Postives = 184/316 (58.23%), Query Frame = 1


Query: 71  NSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNI 130
           N+LI+  V+  +L  AR++FD M ++N V+W A++ GY++ G     F LF+  +     
Sbjct: 121 NNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIR 180

Query: 131 FPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALK 190
           F NE +   +++ C     +  GRQ HG  +K G+  +  V+++L+  Y++C ++ +AL+
Sbjct: 181 FTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALR 240

Query: 191 ILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKD 250
             D +   DV  +  V++      H  +AI +   M++     N  T  +I + C+  K 
Sbjct: 241 AFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKA 300

Query: 251 LQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAA 310
           L+FG+ VH+ ++K  I  DV++G+S++DMY KCG +   R  FD + NRN V+WT+I+AA
Sbjct: 301 LRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 360

Query: 311 YFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGN 370
           + + GF EEA++LF  M+  H+  N  T+  +L +   + AL  G +LHA+  K+ ++ N
Sbjct: 361 HAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 420

Query: 371 VIVGNALIIMYSKSGD 387
           V +G+ L+ +Y K G+
Sbjct: 421 VYIGSTLVWLYCKCGE 435

[Close]

BLAST of Cp4.1LG04g01670 vs. TAIR10
Match: AT3G57430.1 (AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 202.6 bits (514), Expect = 4.7e-52
Identity = 121/364 (33.24%), Postives = 204/364 (56.04%), Query Frame = 1


Query: 35  LLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQINSLINLYVKCDELFIARQMFDRMS 94
           LLK  AD ++++ G+ IHAH+       G   V   N+L+NLY KC +     ++FDR+S
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGY--GVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS 162

Query: 95  KRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQM---YV 154
           +RN VSW +L++         +  E F+ M+  +N+ P+ + + +V+++C +  M    +
Sbjct: 163 ERNQVSWNSLISSLCSFEKWEMALEAFRCML-DENVEPSSFTLVSVVTACSNLPMPEGLM 222

Query: 155 EGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNGLL 214
            G+Q H + L+ G EL+ ++ N L+ MY K   + ++  +L +  G D+  +N VL+ L 
Sbjct: 223 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 282

Query: 215 EHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKS-DIDYDV 274
           ++  L EA+E L+ M+ EG + +  T  ++   C+ L+ L+ GK +HA  LK+  +D + 
Sbjct: 283 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 342

Query: 275 YIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEID 334
           ++GS+++DMY  C  VLSGR  FD + +R +  W A++A Y QN   +EAL LF  ME  
Sbjct: 343 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 402

Query: 335 -HIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSGDILA 394
             +  N  T+A ++ +     A S  + +H    K GL  +  V N L+ MYS+ G I  
Sbjct: 403 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 462

[Close]

BLAST of Cp4.1LG04g01670 vs. NCBI nr
Match: gi|778701968|ref|XP_011655117.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Cucumis sativus])

HSP 1 Score: 634.8 bits (1636), Expect = 1.1e-178
Identity = 314/389 (80.72%), Postives = 352/389 (90.49%), Query Frame = 1


Query: 3   LPVPISSLAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLP 62
           L +PI+ + PVKFTPFLS+SN LASP  DP+KLLKVAADAKNLKFGRTIHAHL ITN   
Sbjct: 4   LKLPITDIMPVKFTPFLSRSNFLASPHQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNY 63

Query: 63  GDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFK 122
            D +VNQ+NSLINLYVKCDE+ IAR++FD M +RNVVSW ALMAGYMQNG+PL VFELFK
Sbjct: 64  RDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFK 123

Query: 123 KMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKC 182
           KM+VKDNIFPNEYVIAT ISSC DSQMYVEG+QCHG++LKSGLE HQYVKNALIQ+YSKC
Sbjct: 124 KMVVKDNIFPNEYVIATAISSC-DSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKC 183

Query: 183 SDVRAALKILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIF 242
           SDV AA++IL TVPG D+FCYNLV+NGLL+H+H+ EA++VLKL+I EG +WNNAT+VTIF
Sbjct: 184 SDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIF 243

Query: 243 RICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVV 302
           R+CASLKD+  GK VHA+MLKSDID DVYIGSSIIDMYGKCGNVLSGR FFD+LQ+RNVV
Sbjct: 244 RLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVV 303

Query: 303 SWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARA 362
           SWT+I+AAYFQN FFEEALNLFSKMEID IPPNEYT+AVL NSAAGLSAL  GDQLHARA
Sbjct: 304 SWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARA 363

Query: 363 EKSGLKGNVIVGNALIIMYSKSGDILAAQ 392
           EKSGLKGNV+VGNALIIMY KSGDILAAQ
Sbjct: 364 EKSGLKGNVMVGNALIIMYFKSGDILAAQ 391

[Close]

BLAST of Cp4.1LG04g01670 vs. NCBI nr
Match: gi|659113970|ref|XP_008456846.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 isoform X1 [Cucumis melo])

HSP 1 Score: 615.5 bits (1586), Expect = 6.6e-173
Identity = 305/391 (78.01%), Postives = 349/391 (89.26%), Query Frame = 1


Query: 3   LPVPISSLAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLP 62
           L +PIS + PVKFTPFLS+S+  ASP  DP+KLLKVAADAKNL FGRTI AHL ITN   
Sbjct: 4   LKLPISDIMPVKFTPFLSRSDFFASPHQDPIKLLKVAADAKNLIFGRTIQAHLTITNHNY 63

Query: 63  GDCRVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFK 122
            D +VNQ+NSLINLYVKC E+ IAR++FD M +RNVVSW  LMAGYMQNG+P  VFELFK
Sbjct: 64  RDSKVNQLNSLINLYVKCGEVSIARKVFDSMPRRNVVSWSTLMAGYMQNGNPSEVFELFK 123

Query: 123 KMIVKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKC 182
           KM++KDNI PN+YVIATVISSC +SQMYVEG+QCHG++LKSGLE HQYVKNALIQ+YSKC
Sbjct: 124 KMVLKDNILPNKYVIATVISSC-NSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKC 183

Query: 183 SDVRAALKILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIF 242
           SDV AA++IL TVPG D+FCYNLV+NGLL+H+H+REA++VLKL+I +G +WN+AT+VTIF
Sbjct: 184 SDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMREAVDVLKLIISKGIEWNSATYVTIF 243

Query: 243 RICASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVV 302
           R+CASLKD+  GK VHA+MLKSDID DVYIGSSIIDMYGKCGNVLSGR FFD+LQ+RNVV
Sbjct: 244 RLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVV 303

Query: 303 SWTAIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARA 362
           SWT+IMAAYFQN FFEEAL+LFSKMEID IPPNEYT+AVL NSAAGLSAL  GDQLHARA
Sbjct: 304 SWTSIMAAYFQNEFFEEALDLFSKMEIDRIPPNEYTMAVLFNSAAGLSALCLGDQLHARA 363

Query: 363 EKSGLKGNVIVGNALIIMYSKSGDILAAQRL 394
           EKSGLKGNV+VGNALIIMY KSGDILAAQR+
Sbjct: 364 EKSGLKGNVMVGNALIIMYFKSGDILAAQRV 393

[Close]

BLAST of Cp4.1LG04g01670 vs. NCBI nr
Match: gi|659114005|ref|XP_008456862.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 isoform X2 [Cucumis melo])

HSP 1 Score: 500.4 bits (1287), Expect = 3.1e-138
Identity = 243/301 (80.73%), Postives = 277/301 (92.03%), Query Frame = 1


Query: 93  MSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDNIFPNEYVIATVISSCRDSQMYVE 152
           M +RNVVSW  LMAGYMQNG+P  VFELFKKM++KDNI PN+YVIATVISSC +SQMYVE
Sbjct: 1   MPRRNVVSWSTLMAGYMQNGNPSEVFELFKKMVLKDNILPNKYVIATVISSC-NSQMYVE 60

Query: 153 GRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAALKILDTVPGYDVFCYNLVLNGLLE 212
           G+QCHG++LKSGLE HQYVKNALIQ+YSKCSDV AA++IL TVPG D+FCYNLV+NGLL+
Sbjct: 61  GKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQ 120

Query: 213 HSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLKDLQFGKHVHARMLKSDIDYDVYI 272
           H+H+REA++VLKL+I +G +WN+AT+VTIFR+CASLKD+  GK VHA+MLKSDID DVYI
Sbjct: 121 HTHMREAVDVLKLIISKGIEWNSATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYI 180

Query: 273 GSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMAAYFQNGFFEEALNLFSKMEIDHI 332
           GSSIIDMYGKCGNVLSGR FFD+LQ+RNVVSWT+IMAAYFQN FFEEAL+LFSKMEID I
Sbjct: 181 GSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIMAAYFQNEFFEEALDLFSKMEIDRI 240

Query: 333 PPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKGNVIVGNALIIMYSKSGDILAAQR 392
           PPNEYT+AVL NSAAGLSAL  GDQLHARAEKSGLKGNV+VGNALIIMY KSGDILAAQR
Sbjct: 241 PPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQR 300

Query: 393 L 394
           +
Sbjct: 301 V 300

[Close]

BLAST of Cp4.1LG04g01670 vs. NCBI nr
Match: gi|1009125033|ref|XP_015879393.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Ziziphus jujuba])

HSP 1 Score: 478.4 bits (1230), Expect = 1.3e-131
Identity = 229/388 (59.02%), Postives = 293/388 (75.52%), Query Frame = 1


Query: 6   PISSLAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDC 65
           P   LAPVK   FL K     S L D +++LKVAAD K+LK G+ IHA LII+N+   D 
Sbjct: 7   PGDPLAPVKLAQFLLKPKHKTSSLDDSIRILKVAADTKDLKLGKIIHAQLIISNQTSTDT 66

Query: 66  RVNQINSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMI 125
            + + NSLI+LYVKCD++ IARQ+FDRM KRNVVSW ALMAGY+ N   L V  LFK M+
Sbjct: 67  DITRTNSLISLYVKCDQVSIARQLFDRMRKRNVVSWSALMAGYLHNDHALEVLGLFKSMV 126

Query: 126 VKDNIFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDV 185
           V DNI PNEY++ TV+SSC DS    EG+QCHGF LKSG+  HQYVKNAL+ MYS+C ++
Sbjct: 127 VVDNICPNEYILTTVLSSCSDSGRVEEGKQCHGFVLKSGMVFHQYVKNALVHMYSRCLEI 186

Query: 186 RAALKILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRIC 245
             A+ +L+ +PGYD+  YN V+NGLLE+ HL+EAIEVL +M+D+   W++ T+VTIF +C
Sbjct: 187 EGAMHVLNMIPGYDIVSYNSVVNGLLENGHLKEAIEVLSMMVDDHVTWDSITYVTIFGLC 246

Query: 246 ASLKDLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWT 305
           A LK+L+ G  VH RMLK++++ + Y+ S+IIDMYGKCG +++    F   Q RNVVSWT
Sbjct: 247 ARLKNLRLGLEVHGRMLKTEVECNAYVSSAIIDMYGKCGRIINAMKMFGCFQTRNVVSWT 306

Query: 306 AIMAAYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKS 365
            +M AYFQNG+FEEALNLFSKM ++ + PNEYT A+LLNS+A LSAL HGD LHA AEKS
Sbjct: 307 TVMDAYFQNGYFEEALNLFSKMRLEGVMPNEYTFAILLNSSACLSALRHGDLLHASAEKS 366

Query: 366 GLKGNVIVGNALIIMYSKSGDILAAQRL 394
           GLK ++IVGNALI MY+KSG+I AA ++
Sbjct: 367 GLKNHIIVGNALINMYTKSGNIEAANKV 394

[Close]

BLAST of Cp4.1LG04g01670 vs. NCBI nr
Match: gi|225442928|ref|XP_002265258.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Vitis vinifera])

HSP 1 Score: 459.9 bits (1182), Expect = 4.6e-126
Identity = 230/384 (59.90%), Postives = 286/384 (74.48%), Query Frame = 1


Query: 10  LAPVKFTPFLSKSNELASPLLDPMKLLKVAADAKNLKFGRTIHAHLIITNRLPGDCRVNQ 69
           LAP    PFL KS+ +  PL   ++LLKV+AD KNLKFG+ IHAHLIITN+   D  + Q
Sbjct: 7   LAPTH-KPFLLKSSTVGHPLEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKD-NIVQ 66

Query: 70  INSLINLYVKCDELFIARQMFDRMSKRNVVSWCALMAGYMQNGSPLVVFELFKKMIVKDN 129
           +NSLINLY KCD++ +AR +FD M KRNVVSW ALMAGY  NG  L V  LFK MI  D 
Sbjct: 67  VNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDY 126

Query: 130 IFPNEYVIATVISSCRDSQMYVEGRQCHGFSLKSGLELHQYVKNALIQMYSKCSDVRAAL 189
           + PNEY+ AT+ISSC DS   VEG QCHG++LKSGL  HQYVKNALI MYS+ SDV+ A+
Sbjct: 127 MRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAM 186

Query: 190 KILDTVPGYDVFCYNLVLNGLLEHSHLREAIEVLKLMIDEGTKWNNATFVTIFRICASLK 249
            +   VPG DVF YN+++NGLLE+ +  EA+EVL  M+DE   W+N T+VT F +C+ LK
Sbjct: 187 SVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLK 246

Query: 250 DLQFGKHVHARMLKSDIDYDVYIGSSIIDMYGKCGNVLSGRAFFDQLQNRNVVSWTAIMA 309
           DL+ G  VH RM ++  +YD ++ S+IIDMYGKCGN+L+ R  F++LQ +NVVSWTAI+A
Sbjct: 247 DLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILA 306

Query: 310 AYFQNGFFEEALNLFSKMEIDHIPPNEYTLAVLLNSAAGLSALSHGDQLHARAEKSGLKG 369
           AY QNG FEEALN F +ME+D + PNEYT AVLLNS AG+SAL HG  LH R +KSG + 
Sbjct: 307 AYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFED 366

Query: 370 NVIVGNALIIMYSKSGDILAAQRL 394
           ++IVGNALI MYSKSG I AA ++
Sbjct: 367 HIIVGNALINMYSKSGSIEAAHKV 388

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g01670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP406_ARATH	1.0e-88	45.12	Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN...	[more]
PPR32_ARATH	4.7e-54	31.93	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
PP357_ARATH	2.3e-53	32.85	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN...	[more]
PP319_ARATH	6.4e-51	33.23	Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN...	[more]
PP285_ARATH	8.4e-51	33.24	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG04g01670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR26_CUCSA	7.3e-179	80.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292190 PE=4 SV=1	[more]
M5WY68_PRUPE	1.6e-125	59.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015390mg PE=4 SV=1	[more]
W9R0I6_9ROSA	1.7e-119	57.14	Uncharacterized protein OS=Morus notabilis GN=L484_013582 PE=4 SV=1	[more]
B9IJZ5_POPTR	2.6e-115	54.83	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12110g PE=4 SV=2	[more]
A0A067KMH8_JATCU	3.7e-114	53.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13045 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g01670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39680.1	5.7e-90	45.12	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G11290.1	2.7e-55	31.93	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G39530.1	1.3e-54	32.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18520.1	3.6e-52	33.23	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G57430.1	4.7e-52	33.24	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG04g01670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701968\|ref\|XP_011655117.1\|	1.1e-178	80.72	PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Cucumis sativu...	[more]
gi\|659113970\|ref\|XP_008456846.1\|	6.6e-173	78.01	PREDICTED: pentatricopeptide repeat-containing protein At5g39680 isoform X1 [Cuc...	[more]
gi\|659114005\|ref\|XP_008456862.1\|	3.1e-138	80.73	PREDICTED: pentatricopeptide repeat-containing protein At5g39680 isoform X2 [Cuc...	[more]
gi\|1009125033\|ref\|XP_015879393.1\|	1.3e-131	59.02	PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Ziziphus jujub...	[more]
gi\|225442928\|ref\|XP_002265258.1\|	4.6e-126	59.90	PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Vitis vinifera...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g01670.1	Cp4.1LG04g01670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 99..127 score: 2.3E-4coord: 71..98 score: 0.0039coord: 173..193 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 300..345 score: 2.7E-11coord: 199..246 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 99..134 score: 8.3E-5coord: 201..234 score: 1.9E-5coord: 302..336 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 370..404 score: 5.645coord: 133..167 score: 5.305coord: 335..369 score: 5.437coord: 66..96 score: 6.621coord: 168..198 score: 5.448coord: 199..233 score: 9.547coord: 234..268 score: 6.237coord: 269..299 score: 6.752coord: 300..334 score: 11.411coord: 97..132 score: 8
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 8..393 score: 4.3E
None	No IPR available	PANTHER	PTHR24015:SF382	SUBFAMILY NOT NAMED	coord: 8..393 score: 4.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g01670	CmaCh11G010140	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g01670	CmoCh11G010360	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g01670	Carg22884	Silver-seed gourd	carcpeB0302

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g01670	Melon (DHL92) v3.6.1	cpemedB704
Cp4.1LG04g01670	Melon (DHL92) v3.6.1	cpemedB753
Cp4.1LG04g01670	Silver-seed gourd	carcpeB0380
Cp4.1LG04g01670	Silver-seed gourd	carcpeB0615
Cp4.1LG04g01670	Cucumber (Chinese Long) v3	cpecucB0838
Cp4.1LG04g01670	Cucumber (Chinese Long) v3	cpecucB0853
Cp4.1LG04g01670	Wax gourd	cpewgoB0825
Cp4.1LG04g01670	Wax gourd	cpewgoB0832
Cp4.1LG04g01670	Cucurbita pepo (Zucchini)	cpecpeB221
Cp4.1LG04g01670	Cucurbita pepo (Zucchini)	cpecpeB475
Cp4.1LG04g01670	Cucumber (Gy14) v1	cgycpeB0893
Cp4.1LG04g01670	Cucurbita maxima (Rimu)	cmacpeB287
Cp4.1LG04g01670	Cucurbita moschata (Rifu)	cmocpeB249
Cp4.1LG04g01670	Wild cucumber (PI 183967)	cpecpiB673
Cp4.1LG04g01670	Cucumber (Chinese Long) v2	cpecuB670
Cp4.1LG04g01670	Bottle gourd (USVL1VR-Ls)	cpelsiB547
Cp4.1LG04g01670	Watermelon (Charleston Gray)	cpewcgB585
Cp4.1LG04g01670	Watermelon (97103) v1	cpewmB641
Cp4.1LG04g01670	Melon (DHL92) v3.5.1	cpemeB631
Cp4.1LG04g01670	Cucumber (Gy14) v2	cgybcpeB415