Cp4.1LG03g18230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g18230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionF-box protein
LocationCp4.1LG03 : 12222503 .. 12222805 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATCAACCAGCTACCGGTGGAGTGTATTTCTTCCATTCTGGCCTTCTCCTCGCCGAAGGACGCCTGTAGATCCGCCACCGTCTCGCCGGCTTTCAGATCCGCCGCCGATTCCGAAGCTCTGTGGACCACTTTTCTGCCGTCCGATTACCGGCAGATTATTTCTCAGGCTTCGTCCCCATCTACCACGTCGTTTCTGAATTCCTTGTCCAAAAAGGCTCTCTACTTCCATCTCTGCGATCGTCAGCTTCTCATCGGCTCTGGAAGGAGGTCGATGACTTTACAATGGAGAGTGGGCTGA

mRNA sequence

ATGGACATCAACCAGCTACCGGTGGAGTGTATTTCTTCCATTCTGGCCTTCTCCTCGCCGAAGGACGCCTGTAGATCCGCCACCGTCTCGCCGGCTTTCAGATCCGCCGCCGATTCCGAAGCTCTGTGGACCACTTTTCTGCCGTCCGATTACCGGCAGATTATTTCTCAGGCTTCGTCCCCATCTACCACGTCGTTTCTGAATTCCTTGTCCAAAAAGGCTCTCTACTTCCATCTCTGCGATCGTCAGCTTCTCATCGGCTCTGGAAGGAGGTCGATGACTTTACAATGGAGAGTGGGCTGA

Coding sequence (CDS)

ATGGACATCAACCAGCTACCGGTGGAGTGTATTTCTTCCATTCTGGCCTTCTCCTCGCCGAAGGACGCCTGTAGATCCGCCACCGTCTCGCCGGCTTTCAGATCCGCCGCCGATTCCGAAGCTCTGTGGACCACTTTTCTGCCGTCCGATTACCGGCAGATTATTTCTCAGGCTTCGTCCCCATCTACCACGTCGTTTCTGAATTCCTTGTCCAAAAAGGCTCTCTACTTCCATCTCTGCGATCGTCAGCTTCTCATCGGCTCTGGAAGGAGGTCGATGACTTTACAATGGAGAGTGGGCTGA

Protein sequence

MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSPSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG
Homology
[Close]
BLAST of Cp4.1LG03g18230 vs. Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-15
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 2   DINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSP 61
           +++ LP EC+S I++F+SP+DAC  A+VS  F SA  S+ +W  F+P +Y  +ISQ+ + 
Sbjct: 35  ELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRA- 94

Query: 62  STTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
                   LSKK LYF LCD+ +LI  G++S+ ++
Sbjct: 95  -----FKFLSKKELYFALCDKSVLIDDGKKSLWIE 123

[Close]
BLAST of Cp4.1LG03g18230 vs. Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-14
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           M+   LP ECI+++++F+SP DACR + VS   RSAADS   W  FLPSDYR  I  +  
Sbjct: 1   MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNS-- 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
                 L+  S K L+   C+  LLI  GR S  ++ R G
Sbjct: 61  ------LSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSG 92

[Close]
BLAST of Cp4.1LG03g18230 vs. Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 5.8e-14
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 

Query: 4   NQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSPST 63
           + LP +CIS+I++F+SP+DAC +A+VS  F SA +S+++W  FLPSDY  ++     P +
Sbjct: 48  DNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLV-----PPS 107

Query: 64  TSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
             F    SKK LYF +CD  +L+  G +S  L+
Sbjct: 108 RVF---SSKKELYFAICDNPVLVEDGGKSFWLE 132

[Close]
BLAST of Cp4.1LG03g18230 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 3   INQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSPS 62
           ++ LP  CIS+I++F+SP+DAC +A VS  F SA  S+ +W  FLP+DY  +I+ +   S
Sbjct: 24  LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS 83

Query: 63  TTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
                   SKK LYF LC+  LLI  G+ S+ L+
Sbjct: 84  --------SKKELYFSLCNDPLLIEDGKMSLWLE 109

[Close]
BLAST of Cp4.1LG03g18230 vs. Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.3e-13
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 6   LPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSPSTTS 65
           LP +CIS+I++F+SP+DAC +A+VS  F SA  S+ +W  FLP +Y  ++S++       
Sbjct: 64  LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRV----- 123

Query: 66  FLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
                SKK LYF LC   +LI  G++S  L+
Sbjct: 124 ---FASKKELYFALCHNPVLIEDGKKSFWLE 146

[Close]
BLAST of Cp4.1LG03g18230 vs. TrEMBL
Match: A0A0A0L445_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G132520 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 78/100 (78.00%), Postives = 83/100 (83.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           MDINQLP ECISSILAF+SPKDACRSA  SPAFRSAADS+A+WTTFLPSDYRQIISQASS
Sbjct: 1   MDINQLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQASS 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            ST+S LNSLSKKALYF L D  L IGSG  S  L+   G
Sbjct: 61  SSTSSVLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESG 100

[Close]
BLAST of Cp4.1LG03g18230 vs. TrEMBL
Match: A0A0A0L9G5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G132530 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-33
Identity = 76/96 (79.17%), Postives = 81/96 (84.38%), Query Frame = 1 

Query: 1  MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
          MDINQLP EC+S ILAF+SPKDACRSA VSPAFRSAADS+ALWTTFLPSDYRQIISQASS
Sbjct: 1  MDINQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQASS 60

Query: 61 PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
           ST+SFLNSLSKKALY  L D  L IGSG     L+
Sbjct: 61 SSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLE 96

[Close]
BLAST of Cp4.1LG03g18230 vs. TrEMBL
Match: A0A0A0L6T0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G132020 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-32
Identity = 77/100 (77.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           MDINQLP EC+SSILAF+SPKDACRSA  SPAFRSAADS+ALW TFLPSDYRQIISQASS
Sbjct: 1   MDINQLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQASS 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            ST+S LNSLSKKALYF L D  L IGSG  S  L+   G
Sbjct: 61  SSTSSCLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESG 100

[Close]
BLAST of Cp4.1LG03g18230 vs. TrEMBL
Match: W9SQH9_9ROSA (F-box protein OS=Morus notabilis GN=L484_007384 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-21
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQA-S 60
           M+I QLP ECIS I++F+SP+DACRS+ VSP FRSAADS+ +W  FLPSDY+  ISQ+  
Sbjct: 1   MEIGQLPEECISHIISFTSPRDACRSSLVSPLFRSAADSDVVWEKFLPSDYKNFISQSVL 60

Query: 61  SPSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            P TT  LN++ KK LYFHLC   + IG+G  S ++  + G
Sbjct: 61  IPETT--LNAMRKKRLYFHLCYNPITIGNGNMSFSIDRQSG 99

[Close]
BLAST of Cp4.1LG03g18230 vs. TrEMBL
Match: V4SAA8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006729mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.4e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 

Query: 1   MDI-NQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQAS 60
           MDI N LPVECIS I++ ++P DACR A VSP F+SAADS+ +W  FLPSDY+ IIS  +
Sbjct: 1   MDITNALPVECISHIISLTTPGDACRLAVVSPVFKSAADSDLVWERFLPSDYKLIIS--N 60

Query: 61  SPSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
           S S++S + SLSKK LYFHLC   +LI +G  S  ++ + G
Sbjct: 61  SVSSSSLITSLSKKDLYFHLCHHPILINNGTMSFAVEKQTG 99

[Close]
BLAST of Cp4.1LG03g18230 vs. TAIR10
Match: AT2G02340.1 (AT2G02340.1 phloem protein 2-B8)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-16
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 2   DINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSP 61
           +++ LP EC+S I++F+SP+DAC  A+VS  F SA  S+ +W  F+P +Y  +ISQ+ + 
Sbjct: 35  ELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRA- 94

Query: 62  STTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
                   LSKK LYF LCD+ +LI  G++S+ ++
Sbjct: 95  -----FKFLSKKELYFALCDKSVLIDDGKKSLWIE 123

[Close]
BLAST of Cp4.1LG03g18230 vs. TAIR10
Match: AT5G24560.1 (AT5G24560.1 phloem protein 2-B12)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-15
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           M+   LP ECI+++++F+SP DACR + VS   RSAADS   W  FLPSDYR  I  +  
Sbjct: 1   MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNS-- 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
                 L+  S K L+   C+  LLI  GR S  ++ R G
Sbjct: 61  ------LSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSG 92

[Close]
BLAST of Cp4.1LG03g18230 vs. TAIR10
Match: AT2G02250.1 (AT2G02250.1 phloem protein 2-B2)

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-15
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 

Query: 4   NQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSPST 63
           + LP +CIS+I++F+SP+DAC +A+VS  F SA +S+++W  FLPSDY  ++     P +
Sbjct: 48  DNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLV-----PPS 107

Query: 64  TSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
             F    SKK LYF +CD  +L+  G +S  L+
Sbjct: 108 RVF---SSKKELYFAICDNPVLVEDGGKSFWLE 132

[Close]
BLAST of Cp4.1LG03g18230 vs. TAIR10
Match: AT2G02240.1 (AT2G02240.1 F-box family protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-14
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 6   LPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASSPSTTS 65
           LP +CIS+I++F+SP+DAC +A+VS  F SA  S+ +W  FLP +Y  ++S++       
Sbjct: 64  LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRV----- 123

Query: 66  FLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
                SKK LYF LC   +LI  G++S  L+
Sbjct: 124 ---FASKKELYFALCHNPVLIEDGKKSFWLE 146

[Close]
BLAST of Cp4.1LG03g18230 vs. TAIR10
Match: AT2G02320.1 (AT2G02320.1 phloem protein 2-B7)

HSP 1 Score: 73.6 bits (179), Expect = 8.0e-14
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           + +  LP ECIS I++F+SP+DAC  A VS  F SA  S+ +W  F+P +Y  ++S++  
Sbjct: 38  LSLGDLPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQH 97

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            S        SKK L+F LCD  +LI   ++ + ++   G
Sbjct: 98  FS--------SKKELFFALCDESVLINVSKKDLWIEKATG 129

[Close]
BLAST of Cp4.1LG03g18230 vs. NCBI nr
Match: gi|778677900|ref|XP_004134378.2| (PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-33
Identity = 78/100 (78.00%), Postives = 83/100 (83.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           MDINQLP ECISSILAF+SPKDACRSA  SPAFRSAADS+A+WTTFLPSDYRQIISQASS
Sbjct: 1   MDINQLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQASS 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            ST+S LNSLSKKALYF L D  L IGSG  S  L+   G
Sbjct: 61  SSTSSVLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESG 100

[Close]
BLAST of Cp4.1LG03g18230 vs. NCBI nr
Match: gi|778677897|ref|XP_011650883.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-33
Identity = 76/96 (79.17%), Postives = 81/96 (84.38%), Query Frame = 1 

Query: 1  MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
          MDINQLP EC+S ILAF+SPKDACRSA VSPAFRSAADS+ALWTTFLPSDYRQIISQASS
Sbjct: 1  MDINQLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQASS 60

Query: 61 PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQ 97
           ST+SFLNSLSKKALY  L D  L IGSG     L+
Sbjct: 61 SSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLE 96

[Close]
BLAST of Cp4.1LG03g18230 vs. NCBI nr
Match: gi|778677903|ref|XP_004134006.2| (PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 77/100 (77.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           MDINQLP EC+SSILAF+SPKDACRSA  SPAFRSAADS+ALW TFLPSDYRQIISQASS
Sbjct: 1   MDINQLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQASS 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            ST+S LNSLSKKALYF L D  L IGSG  S  L+   G
Sbjct: 61  SSTSSCLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESG 100

[Close]
BLAST of Cp4.1LG03g18230 vs. NCBI nr
Match: gi|659075871|ref|XP_008438376.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32
Identity = 75/100 (75.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           MDINQLP ECISSILAF+SPKDACRS  VSP F+ AADS+ALWTTFLPSDYRQIISQASS
Sbjct: 1   MDINQLPAECISSILAFTSPKDACRSPVVSPTFKYAADSDALWTTFLPSDYRQIISQASS 60

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTLQWRVG 101
            ST+SFL+SL KK LYF LCD  L IGSG  S  L+   G
Sbjct: 61  SSTSSFLDSLPKKDLYFRLCDHLLFIGSGNSSFVLEKESG 100

[Close]
BLAST of Cp4.1LG03g18230 vs. NCBI nr
Match: gi|720025845|ref|XP_010264074.1| (PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera])

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1 

Query: 1   MDINQLPVECISSILAFSSPKDACRSATVSPAFRSAADSEALWTTFLPSDYRQIISQASS 60
           +D++ LP  CIS+IL+F+SP+DACRSA VS  FRSAA+S  +W  FLPSDY++I+S+A S
Sbjct: 12  VDLSALPESCISNILSFTSPRDACRSAAVSSVFRSAAESNTVWDRFLPSDYQEILSRAIS 71

Query: 61  PSTTSFLNSLSKKALYFHLCDRQLLIGSGRRSMTL 96
           P   S L+  SKKA YFHLCD  LLI  G++S  L
Sbjct: 72  PPPASILS--SKKAFYFHLCDHPLLIDDGKKSFRL 104

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g18230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP2B8_ARATH3.0e-1542.11Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=3 SV=1[more]
P2B12_ARATH4.4e-1443.00Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1[more]
PP2B2_ARATH5.8e-1443.01Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2[more]
SKIP3_ARATH2.9e-1343.62F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2[more]
FB95_ARATH8.3e-1341.76F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1[more]
BLAST of Cp4.1LG03g18230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L445_CUCSA1.7e-3378.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G132520 PE=4 SV=1[more]
A0A0A0L9G5_CUCSA6.6e-3379.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G132530 PE=4 SV=1[more]
A0A0A0L6T0_CUCSA1.1e-3277.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G132020 PE=4 SV=1[more]
W9SQH9_9ROSA4.4e-2155.45F-box protein OS=Morus notabilis GN=L484_007384 PE=4 SV=1[more]
V4SAA8_9ROSI6.4e-2055.45Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006729mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g18230 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02340.11.7e-1642.11 phloem protein 2-B8[more]
AT5G24560.12.5e-1543.00 phloem protein 2-B12[more]
AT2G02250.13.2e-1543.01 phloem protein 2-B2[more]
AT2G02240.14.7e-1441.76 F-box family protein[more]
AT2G02320.18.0e-1437.00 phloem protein 2-B7[more]
BLAST of Cp4.1LG03g18230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677900|ref|XP_004134378.2|2.5e-3378.00PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus][more]
gi|778677897|ref|XP_011650883.1|9.4e-3379.17PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus][more]
gi|778677903|ref|XP_004134006.2|1.6e-3277.00PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus][more]
gi|659075871|ref|XP_008438376.1|4.7e-3275.00PREDICTED: putative F-box protein PP2-B12 [Cucumis melo][more]
gi|720025845|ref|XP_010264074.1|2.2e-2157.89PREDICTED: putative F-box protein PP2-B12 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g18230.1Cp4.1LG03g18230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 3..46
score: 2.
IPR001810F-box domainSMARTSM00256fbox_2coord: 6..46
score: 6.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 1..46
score: 9
IPR001810F-box domainunknownSSF81383F-box domaincoord: 3..78
score: 6.73
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 3..67
score: 7.
NoneNo IPR availablePANTHERPTHR32278FAMILY NOT NAMEDcoord: 1..96
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g18230CsGy3G011070Cucumber (Gy14) v2cgybcpeB406
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g18230Silver-seed gourdcarcpeB1098
Cp4.1LG03g18230Silver-seed gourdcarcpeB1331
Cp4.1LG03g18230Silver-seed gourdcarcpeB1504
Cp4.1LG03g18230Cucumber (Chinese Long) v3cpecucB0755
Cp4.1LG03g18230Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g18230Wax gourdcpewgoB0765
Cp4.1LG03g18230Wax gourdcpewgoB0795
Cp4.1LG03g18230Wax gourdcpewgoB0800
Cp4.1LG03g18230Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g18230Cucurbita pepo (Zucchini)cpecpeB265
Cp4.1LG03g18230Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g18230Cucurbita pepo (Zucchini)cpecpeB478
Cp4.1LG03g18230Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g18230Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g18230Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g18230Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g18230Cucurbita maxima (Rimu)cmacpeB640
Cp4.1LG03g18230Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g18230Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g18230Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g18230Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g18230Cucurbita moschata (Rifu)cmocpeB590
Cp4.1LG03g18230Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g18230Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g18230Wild cucumber (PI 183967)cpecpiB610
Cp4.1LG03g18230Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g18230Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g18230Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g18230Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g18230Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g18230Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g18230Watermelon (97103) v1cpewmB613
Cp4.1LG03g18230Watermelon (97103) v1cpewmB622
Cp4.1LG03g18230Silver-seed gourdcarcpeB0327
Cp4.1LG03g18230Melon (DHL92) v3.5.1cpemeB578
Cp4.1LG03g18230Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g18230Cucumber (Gy14) v2cgybcpeB404
Cp4.1LG03g18230Melon (DHL92) v3.6.1cpemedB685
Cp4.1LG03g18230Melon (DHL92) v3.6.1cpemedB693