Cp4.1LG03g17910 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g17910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 12462607 .. 12464134 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAGAAACCTGCCCTTGCCATGATAAAGAATTCAAGGAAACTGACCTTCTATACGGCTGAACTTGATTCATTCTGTCTCTTGGCTCTGAATCTTGACAATCTGATGCAAAACTTTGCCTTCGATTCTTGGAAGAAGCATCGCCATTCTCAAGCCCAGAAACAGCAGTTTCTTGCCTCACTGTTAAATCCTGCAAATCTTGAACCACTACAACAACTACTGTGTCATTGGTTCTGTGTTGATACTGAAGAGCAGATGCATTTAGGTGTTCTGTTCTTAGAATTTCTTGTGCTGGGGGTGGGGAAAGATTGGTTGGTGAAATGTTGGAGCGGCAGAGAGGGCAAGTTGAGTGAGATTTGAGCCATGTGTCAATGCAAGGAAGATGAAAGGCATGGCTGCACTTTGGCAGCAACCTTAAGCTCTCATTTTCTTGAAACTCACTCAGGCAAACTGAGCAATCAGTACCTTCAACTAAGTCATCTCCTCTTTTATACTTGCAGACTGTGATGGACTTGATGAGAGCATGATCCAGGCCTGCAGGAGGAGGAGGAGCTTGCAGCTGGTTTTCGTGGCGGATTTGGGTAAGATTTTCTTCATCATCCATTTCCATGGCAGCGTTGGTGGTAGCAGCTCTGTTCCTGCAATATTTGGAGATGATGGTGTAGTAGCTTACCATAATGAAGGCGCTAGCCAAGATTCCAATGATGGCGATGATGAGAGGAGAGAAATCAGTGGCGGAATCGCCATTGCTGCCATAGCCAAAAGGTGGAGGTGGTGGAAAGATGATGTAGCACCACTGAGGACAGTATATGCTACAAATCTCTAAAGAACAGTCCTTGTAAGCATATGGCTGCCATTGATTTGAGTTCCCCACAGAACCCATTTTCCTCTGCCACTAGCAGATCTTGCAGGTACCCCTATCTTCTCTTTTTTCATGTGTTTATGTCTAGGATAGAGAGAGAGAAAGAAGAGAGAGAAAGCGTAACAACCCAAGCTCACTCTGCTAGATTATTGTCCTCCTTCGAACTTCTCTCAAAGTTTTTAAAACGTGTTTGCTAGAGATAGGTCTCCACACTCTTATAAAAAATGTTTCGTTCTTCTCTTCCACCGATGTAGGATCTCGGGTGAAGAAAAAGAAAGCAGAATTGAGGGACTTGGATGCAAAGGGAAGGAAAGTGGGAGGAGGTAGGAAACTGTTGTATCACTCATTAACACTTGTCCTTTCCCTTTACTTTTGGCTTTTCAATTCTTCTCCTTCAGAAACATGTCTTGAACAAAGAAATTGTGTCATTATTAGTTTGTTGTCTAAGTCCCTTGGGTTTGATAAACAAGCTAAATGAGCTCTAAGGAACAAAAAAAGAGCTCACTAAAATAAAGGCAAGAGATTCACATTTCAGATGTAAGTGTAAGTGGTCACGTGCAATCATGTGAGTACTTGACGTGGCCAATGTTTATTGGCTTGGTGGTTGAACCAAAGGAGATTTCCAGAAATGTGCCTTTTGTAACAATAAGGAACTTAATTTTCTAC

mRNA sequence

CAACAGAAACCTGCCCTTGCCATGATAAAGAATTCAAGGAAACTGACCTTCTATACGGCTGAACTTGATTCATTCTGTCTCTTGGCTCTGAATCTTGACAATCTGATGCAAAACTTTGCCTTCGATTCTTGGAAGAAGCATCGCCATTCTCAAGCCCAGAAACAGCAGTTTCTTGCCTCACTGTTAAATCCTGCAAATCTTGAACCACTACAACAACTACTGTGTCATTGGTTCTGTGTTGATACTGAAGAGCAGATGCATTTAGACTGTGATGGACTTGATGAGAGCATGATCCAGGCCTGCAGGAGGAGGAGGAGCTTGCAGCTGGTTTTCGTGGCGGATTTGGGTAAGATTTTCTTCATCATCCATTTCCATGGCAGCGTTGGTGGTAGCAGCTCTGTTCCTGCAATATTTGGAGATGATGGTGTAGTAGCTTACCATAATGAAGGCGCTAGCCAAGATTCCAATGATGGCGATGATGAGAGGAGAGAAATCAGTGGCGGAATCGCCATTGCTGCCATAGCCAAAAGGTGGAGGTGGTGGAAAGATGATGTAGCACCACTGAGGACAGTATATGCTACAAATCTCTAAAGAACAGTCCTTGTAAGCATATGGCTGCCATTGATTTGAGTTCCCCACAGAACCCATTTTCCTCTGCCACTAGCAGATCTTGCAGGTACCCCTATCTTCTCTTTTTTCATGTGTTTATGTCTAGGATAGAGAGAGAGAAAGAAGAGAGAGAAAGCGTAACAACCCAAGCTCACTCTGCTAGATTATTGTCCTCCTTCGAACTTCTCTCAAAGTTTTTAAAACGTGTTTGCTAGAGATAGGTCTCCACACTCTTATAAAAAATGTTTCGTTCTTCTCTTCCACCGATGTAGGATCTCGGGTGAAGAAAAAGAAAGCAGAATTGAGGGACTTGGATGCAAAGGGAAGGAAAGTGGGAGGAGGTAGGAAACTGTTGTATCACTCATTAACACTTGTCCTTTCCCTTTACTTTTGGCTTTTCAATTCTTCTCCTTCAGAAACATGTCTTGAACAAAGAAATTGTGTCATTATTAGTTTGTTGTCTAAGTCCCTTGGGTTTGATAAACAAGCTAAATGAGCTCTAAGGAACAAAAAAAGAGCTCACTAAAATAAAGGCAAGAGATTCACATTTCAGATGTAAGTGTAAGTGGTCACGTGCAATCATGTGAGTACTTGACGTGGCCAATGTTTATTGGCTTGGTGGTTGAACCAAAGGAGATTTCCAGAAATGTGCCTTTTGTAACAATAAGGAACTTAATTTTCTAC

Coding sequence (CDS)

CAACAGAAACCTGCCCTTGCCATGATAAAGAATTCAAGGAAACTGACCTTCTATACGGCTGAACTTGATTCATTCTGTCTCTTGGCTCTGAATCTTGACAATCTGATGCAAAACTTTGCCTTCGATTCTTGGAAGAAGCATCGCCATTCTCAAGCCCAGAAACAGCAGTTTCTTGCCTCACTGTTAAATCCTGCAAATCTTGAACCACTACAACAACTACTGTGTCATTGGTTCTGTGTTGATACTGAAGAGCAGATGCATTTAGACTGTGATGGACTTGATGAGAGCATGATCCAGGCCTGCAGGAGGAGGAGGAGCTTGCAGCTGGTTTTCGTGGCGGATTTGGGTAAGATTTTCTTCATCATCCATTTCCATGGCAGCGTTGGTGGTAGCAGCTCTGTTCCTGCAATATTTGGAGATGATGGTGTAGTAGCTTACCATAATGAAGGCGCTAGCCAAGATTCCAATGATGGCGATGATGAGAGGAGAGAAATCAGTGGCGGAATCGCCATTGCTGCCATAGCCAAAAGGTGGAGGTGGTGGAAAGATGATGTAGCACCACTGAGGACAGTATATGCTACAAATCTCTAA

Protein sequence

QQKPALAMIKNSRKLTFYTAELDSFCLLALNLDNLMQNFAFDSWKKHRHSQAQKQQFLASLLNPANLEPLQQLLCHWFCVDTEEQMHLDCDGLDESMIQACRRRRSLQLVFVADLGKIFFIIHFHGSVGGSSSVPAIFGDDGVVAYHNEGASQDSNDGDDERREISGGIAIAAIAKRWRWWKDDVAPLRTVYATNL
Homology
[Close]
BLAST of Cp4.1LG03g17910 vs. TrEMBL
Match: A0A0D9YWQ7_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1 

Query: 90  CDGLDESMIQACRRRRSLQLVFVADLGKIFFIIHFHGSVGGSSSVP------AIFGDDGV 149
           CD +D+ ++   R+R + +L+    +  +        S G   SVP      A+ G DGV
Sbjct: 119 CDLVDQRLVHPVRQRDAPRLLAPGIVSAVGAATAAAVSAGAKESVPEGAEGAAVLGYDGV 178

Query: 150 VAYHNEGASQDSNDGDDERRE-ISGGIAIAA---IAKRWRWWKDDVAPLRTVYA 194
           VA   EGA +  +DGDDERRE  +GG+  A    +  R RW +D+VAPLR V+A
Sbjct: 179 VADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAVHA 232

[Close]
BLAST of Cp4.1LG03g17910 vs. TrEMBL
Match: A0A0D3F962_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1 

Query: 90  CDGLDESMIQACRRRRSLQLVFVADLGKIFFIIHFHGSVGGSSSVP------AIFGDDGV 149
           CD +D+ ++   R+R + +L+    +  +        S G   SVP      A+ G DGV
Sbjct: 98  CDLVDQRLVHPVRQRDAPRLLAPGIVSAVGAAAAAAVSAGAKESVPEGAEGAAVLGYDGV 157

Query: 150 VAYHNEGASQDSNDGDDERRE-ISGGIAIAA---IAKRWRWWKDDVAPLRTVYA 194
           VA   EGA +  +DGDDERRE  +GG+  A    +  R RW +D+VAPLR V+A
Sbjct: 158 VADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAVHA 211

[Close]
BLAST of Cp4.1LG03g17910 vs. TrEMBL
Match: C7IZ11_ORYSJ (Os02g0691900 protein OS=Oryza sativa subsp. japonica GN=Os02g0691900 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1 

Query: 90  CDGLDESMIQACRRRRSLQLVFVADLGKIFFIIHFHGSVGGSSSVP------AIFGDDGV 149
           CD +D+ ++   R+R + +L+    +  +        S G   SVP      A+ G DGV
Sbjct: 98  CDLVDQRLVHPVRQRDAPRLLAPGIVSAVGAAAAAAVSAGAKESVPEGAEGAAVLGYDGV 157

Query: 150 VAYHNEGASQDSNDGDDERRE-ISGGIAIAA---IAKRWRWWKDDVAPLRTVYA 194
           VA   EGA +  +DGDDERRE  +GG+  A    +  R RW +D+VAPLR V+A
Sbjct: 158 VADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAVHA 211

[Close]
BLAST of Cp4.1LG03g17910 vs. NCBI nr
Match: gi|255671177|dbj|BAH91849.1| (Os02g0691901 [Oryza sativa Japonica Group])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 1 

Query: 90  CDGLDESMIQACRRRRSLQLVFVADLGKIFFIIHFHGSVGGSSSVP------AIFGDDGV 149
           CD +D+ ++   R+R + +L+    +  +        S G   SVP      A+ G DGV
Sbjct: 98  CDLVDQRLVHPVRQRDAPRLLAPGIVSAVGAAAAAAVSAGAKESVPEGAEGAAVLGYDGV 157

Query: 150 VAYHNEGASQDSNDGDDERRE-ISGGIAIAA---IAKRWRWWKDDVAPLRTVYA 194
           VA   EGA +  +DGDDERRE  +GG+  A    +  R RW +D+VAPLR V+A
Sbjct: 158 VADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAVHA 211

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g17910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D9YWQ7_9ORYZ1.9e-0737.72Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
A0A0D3F962_9ORYZ1.9e-0737.72Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]
C7IZ11_ORYSJ1.9e-0737.72Os02g0691900 protein OS=Oryza sativa subsp. japonica GN=Os02g0691900 PE=4 SV=1[more]
BLAST of Cp4.1LG03g17910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|255671177|dbj|BAH91849.1|2.7e-0737.72Os02g0691901 [Oryza sativa Japonica Group][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g17910.1Cp4.1LG03g17910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g17910Carg14899Silver-seed gourdcarcpeB0884
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g17910Silver-seed gourdcarcpeB1331
Cp4.1LG03g17910Silver-seed gourdcarcpeB1504
Cp4.1LG03g17910Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g17910Cucumber (Chinese Long) v3cpecucB0764
Cp4.1LG03g17910Wax gourdcpewgoB0784
Cp4.1LG03g17910Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g17910Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g17910Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g17910Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g17910Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g17910Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g17910Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g17910Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g17910Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g17910Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g17910Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g17910Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g17910Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g17910Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g17910Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g17910Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g17910Watermelon (97103) v1cpewmB613
Cp4.1LG03g17910Silver-seed gourdcarcpeB0327
Cp4.1LG03g17910Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g17910Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g17910Cucumber (Gy14) v2cgybcpeB413
Cp4.1LG03g17910Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g17910Melon (DHL92) v3.6.1cpemedB696