Cp4.1LG03g17550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g17550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cp4.1LG03 : 12639997 .. 12642510 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGTTGGATCTCAACTCATCCATTAGTCAATTCATGCTCTCCTCTTATCTCTTCCCAATTGAATGGTCCAAATGGCAACCTTATCTTAGCCAACAGATTGTTAAAACCCCAAAACAAACAAAATTCAAAGCCAAAACAGAGCCCAATGATTTTGACCCAAAAATTATTTGTCATCAAAATCCCTTCGAACCTACCCACCACTCCAAAACCCAGTCTCAAATTCAACCAAAAACCATTTCCCCTCTTAGAGCACAGCAAAAAATGGACAGAGCTCAAAGAATTTCAGCAACTTCATGCACAAATGGTCGTTACAGGCTTCATCCACCATACCCCATCACTCAACAAGCTCATTGCCCATGTCCTCTCGATGGGCTCGCTCGGAGTTGCCTATGCTTATTCGGTTTTTACTCACACTCGAGAGTTGGATATACTTACTTGGAATACCATGTTGAGAGGCTTTGTGAATTCCGACATGCCGAGAAGGGCGCTCCGAAGTTACATTGAGATGCTTCAATGGTCAAGGATTGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGCGCCCTTTCATTGGAGTTCAAAGTTGGGAAGGTTCTACATGGCCAGATCGTCAAGTATAGGCTTGATTCAGACCTGTACATAGAAACCACATTGTTAAATATGTATGCCTCCTGTGGGGATTTGAACTCTGCTAGGTTCTTGTTTGAGAAAATGGGTCATAGAAACAAAGTGGTGTGGACTTCGATGATTAGTGGCTATATGAGAAACCATTGTCCTAATGAGGCTTTGGTTCTGTATGAGAAAATGGTGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCGACGCTCGTATCGGCTTCGGCTGAGTTGAAAGATTTGGGTGTTGGAATGAAGCTGCATTCTCGAATTCAGGAGATGGGTATGAAGATTTGTGCTGTTCTAGGAAGTGCTTTGGTTGATATGTACGCTAAATGTGGGGATCTAAAAACTGCAAGGCAAGTATTTGATAATATGTCTGAGAGAAATGTATATACCTTCTCGGCTTTGATTTTTGGTTATGTCAAGAACAATAGAAGCACAGAGGCGTTGCAGTTATTCAAGGAAATGACTGGCGCCTCGAATGTGCGTCCAAATGACGTCACGATTCTAGCCGTTGTTTCAGCATGTGCTCAATTGGGTGACTTAGAAACAGGAAGATGGATTCATGACTATATTACCAGGACCGAACAGGATTGTTCGGTTAGTTTGAGTAACGCGTTGATCGATATGTACTCAAAGTGTGGAGAAATAGATGCTGCCGAAACAATCTTTGATAGCATGTCGAAAAGAGATTTGATCTCTTGGAATTCTTTGGTGAACGGTCTCGCTCTACATGGCCTCGGCAGGGAGGCTCTCACTCGGTTGCGCCTAATGCAGATGACAGACTTGCAGCCAGATGAAATAACTTTCATTGGGGTACTGACTGCCTGCAGCCACGCAGGATTAGTTCAAGAGGGCAAGAAGCTATTCCATGAAATGGAAGCATTATATGGAATAAGACCCAAGTTGGAGCATTACGGGTGCATGGTAGATCTTTTATGCAGAGCGGGACGTCTGGTCGAAGCTCGGGAATTTATTCAAGCAATGCCTTTACAGCCAAATGGTGCAATATGGGGCGCTATGCTCGGTGCTTGCAGAGTGTACAACGATCTTGAGCTCGGCGAGGAATCTGCGAGATGCCTGCTAGAACAGGAACCAACAAATGATGGAGTTTACATTTTGCTATCAAACATTTATGCAAAAAGGCAAATGTGGAATGAAGTGAAAAAAGTTCGAGAATTGATGAACGAGAAAGGAATTCAGAAAACACCCGGTTACAGTTCGGTTGTCATCGATAACGTCACCCATTCGTTTCTGGCTGGAGATTGTTCTCACCCAGAAATAACTGAAATATTTACAATGCTTAGACAAGTTAGAGAGAAGCTGAAACTAGCAGGCTATGTTGCAGATATCTCAGAAGTATTACTCAACATTGATGATAATAAGAAGGAAGAATCAGTTTCTCAACATAGTGAAAAACTAGCTTTATGCTATGGCTTATTGAAATCTAAGCCAGGGAGGAAAATTGTTATCCTGAAAAACCTTAGGGTCTGCTCAGACTGTCATACTATGATAAAACTCGTCTCGAAGATTTACCGAAGGCAGATAACGGTAAGAGATCGAATCCGTTTCCACCACTTCAAAGACGGCGTCTGTTCTTGCCGAGATTATTGGTGAAGCGTGTATGTACCAAATATGGCACTGCAGAAACTTTTCAATGGTATTTCCTTCTCTACTGTATAAATAGAAAATAGGTTTACAAGAAATAGCAAAGAACAGTGTTATGATATGTAGAATGGTGTAAAATTGAAATTTTATCATGAATACTTTATTTTACATATGTTCGGTGCTTGTAGAATACGATAAATCTACTACTGATTCCTTGTTATGGAAGGCTTATTTCCGACCTAAACGACTAG

mRNA sequence

ATGAACAAATTGTTAAAACCCCAAAACAAACAAAATTCAAAGCCAAAACAGAGCCCAATGATTTTGACCCAAAAATTATTTGTCATCAAAATCCCTTCGAACCTACCCACCACTCCAAAACCCAGTCTCAAATTCAACCAAAAACCATTTCCCCTCTTAGAGCACAGCAAAAAATGGACAGAGCTCAAAGAATTTCAGCAACTTCATGCACAAATGGTCGTTACAGGCTTCATCCACCATACCCCATCACTCAACAAGCTCATTGCCCATGTCCTCTCGATGGGCTCGCTCGGAGTTGCCTATGCTTATTCGGTTTTTACTCACACTCGAGAGTTGGATATACTTACTTGGAATACCATGTTGAGAGGCTTTGTGAATTCCGACATGCCGAGAAGGGCGCTCCGAAGTTACATTGAGATGCTTCAATGGTCAAGGATTGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGCGCCCTTTCATTGGAGTTCAAAGTTGGGAAGGTTCTACATGGCCAGATCGTCAAGTATAGGCTTGATTCAGACCTGTACATAGAAACCACATTGTTAAATATGTATGCCTCCTGTGGGGATTTGAACTCTGCTAGGTTCTTGTTTGAGAAAATGGGTCATAGAAACAAAGTGGTGTGGACTTCGATGATTAGTGGCTATATGAGAAACCATTGTCCTAATGAGGCTTTGGTTCTGTATGAGAAAATGGTGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCGACGCTCAATACGATAAATCTACTACTGATTCCTTGTTATGGAAGGCTTATTTCCGACCTAAACGACTAG

Coding sequence (CDS)

ATGAACAAATTGTTAAAACCCCAAAACAAACAAAATTCAAAGCCAAAACAGAGCCCAATGATTTTGACCCAAAAATTATTTGTCATCAAAATCCCTTCGAACCTACCCACCACTCCAAAACCCAGTCTCAAATTCAACCAAAAACCATTTCCCCTCTTAGAGCACAGCAAAAAATGGACAGAGCTCAAAGAATTTCAGCAACTTCATGCACAAATGGTCGTTACAGGCTTCATCCACCATACCCCATCACTCAACAAGCTCATTGCCCATGTCCTCTCGATGGGCTCGCTCGGAGTTGCCTATGCTTATTCGGTTTTTACTCACACTCGAGAGTTGGATATACTTACTTGGAATACCATGTTGAGAGGCTTTGTGAATTCCGACATGCCGAGAAGGGCGCTCCGAAGTTACATTGAGATGCTTCAATGGTCAAGGATTGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGCGCCCTTTCATTGGAGTTCAAAGTTGGGAAGGTTCTACATGGCCAGATCGTCAAGTATAGGCTTGATTCAGACCTGTACATAGAAACCACATTGTTAAATATGTATGCCTCCTGTGGGGATTTGAACTCTGCTAGGTTCTTGTTTGAGAAAATGGGTCATAGAAACAAAGTGGTGTGGACTTCGATGATTAGTGGCTATATGAGAAACCATTGTCCTAATGAGGCTTTGGTTCTGTATGAGAAAATGGTGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCGACGCTCAATACGATAAATCTACTACTGATTCCTTGTTATGGAAGGCTTATTTCCGACCTAAACGACTAG

Protein sequence

MNKLLKPQNKQNSKPKQSPMILTQKLFVIKIPSNLPTTPKPSLKFNQKPFPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDEVTMATLNTINLLLIPCYGRLISDLND

Homology

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BLAST of Cp4.1LG03g17550 vs. Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 70/208 (33.65%), Postives = 114/208 (54.81%), Query Frame = 1


Query: 51  PLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMG-SLGVAYAYSVFTHT 110
           P+L   +    L E  QLH  M+ +  I +   L++LI    +   ++ ++YA SVF   
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 111 RELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVG 170
               +  WN+M+RG+ NS  P +AL  Y EML+     PD FTFP +LK C+   + + G
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVLKACSGLRDIQFG 127

Query: 171 KVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRN 230
             +HG +VK   + ++Y+ T LL+MY  CG++N    +FE +   N V W S+ISG++ N
Sbjct: 128 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNN 187

Query: 231 HCPNEALVLYEKMVEDGFSPDEVTMATL 258
           +  ++A+  + +M  +G   +E  M  L
Sbjct: 188 NRFSDAIEAFREMQSNGVKANETIMVDL 214

[Close]

BLAST of Cp4.1LG03g17550 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.1e-28
Identity = 61/198 (30.81%), Postives = 110/198 (55.56%), Query Frame = 1


Query: 57  KKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILT 116
           ++   L++ +Q H  M+ TG      S +KL A         + YA  VF    + +   
Sbjct: 38  ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFA 97

Query: 117 WNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQI 176
           WNT++R + +   P  ++ ++++M+  S+  P+++TFP L+K  A      +G+ LHG  
Sbjct: 98  WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 157

Query: 177 VKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEAL 236
           VK  + SD+++  +L++ Y SCGDL+SA  +F  +  ++ V W SMI+G+++   P++AL
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 237 VLYEKMVEDGFSPDEVTM 255
            L++KM  +      VTM
Sbjct: 218 ELFKKMESEDVKASHVTM 235

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BLAST of Cp4.1LG03g17550 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.7e-28
Identity = 80/230 (34.78%), Postives = 124/230 (53.91%), Query Frame = 1


Query: 18  SPMILTQKLFVIKIPSNLPTTPKPSLKFNQKPFPLLEHSKKWTELKEFQQLHAQMVVTGF 77
           SP+ +    +      +    P  S++ N     LL + K    L+  + +HAQM+  G 
Sbjct: 6   SPLTVPSSSYPFHFLPSSSDPPYDSIR-NHPSLSLLHNCKT---LQSLRIIHAQMIKIGL 65

Query: 78  IHHTPSLNKLIAH-VLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRS 137
            +   +L+KLI   +LS    G+ YA SVF   +E ++L WNTM RG   S  P  AL+ 
Sbjct: 66  HNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKL 125

Query: 138 YIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYA 197
           Y+ M+    ++P+ +TFP +LK CA S  FK G+ +HG ++K   D DLY+ T+L++MY 
Sbjct: 126 YVCMISLG-LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 185

Query: 198 SCGDLNSARFLFEKMGHRNKVVWTSMISGY-MRNHCPNEALVLYEKMVED 246
             G L  A  +F+K  HR+ V +T++I GY  R +  N   +  E  V+D
Sbjct: 186 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230

[Close]

BLAST of Cp4.1LG03g17550 vs. Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-27
Identity = 75/222 (33.78%), Postives = 120/222 (54.05%), Query Frame = 1


Query: 37  TTPKPSLKFNQKPFPLLEHS-KKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMG 96
           TT KPSL    K       S K    + E +  H  +   G  +   ++ KL+A    +G
Sbjct: 19  TTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELG 78

Query: 97  SL-GVAYAYSVFTHTRELDI-LTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTF 156
           +   +++A  VF ++        +N+++RG+ +S +   A+  ++ M+  S I PD++TF
Sbjct: 79  TRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMN-SGISPDKYTF 138

Query: 157 PSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGH 216
           P  L  CA S     G  +HG IVK     DL+++ +L++ YA CG+L+SAR +F++M  
Sbjct: 139 PFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSE 198

Query: 217 RNKVVWTSMISGYMRNHCPNEALVLYEKMVED-GFSPDEVTM 255
           RN V WTSMI GY R     +A+ L+ +MV D   +P+ VTM
Sbjct: 199 RNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTM 239

[Close]

BLAST of Cp4.1LG03g17550 vs. Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-27
Identity = 67/201 (33.33%), Postives = 110/201 (54.73%), Query Frame = 1


Query: 57  KKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILT 116
           KK   + + +Q+ AQM+    +H     N LI   + +G     Y+  +F+ T E +  +
Sbjct: 45  KKCISVNQLRQIQAQML----LHSVEKPNFLIPKAVELGDFN--YSSFLFSVTEEPNHYS 104

Query: 117 WNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQI 176
           +N M+RG  N+     A  S    +++S + PD+FT+  +   CA   E  VG+ +H  +
Sbjct: 105 FNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSL 164

Query: 177 VKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEAL 236
            K  L+ D++I  +L+ MYA CG +  AR LF+++  R+ V W SMISGY       +A+
Sbjct: 165 FKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAM 224

Query: 237 VLYEKMVEDGFSPDEVTMATL 258
            L+ KM E+GF PDE T+ ++
Sbjct: 225 DLFRKMEEEGFEPDERTLVSM 239

[Close]

BLAST of Cp4.1LG03g17550 vs. TrEMBL
Match: A0A0A0L4G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127110 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.4e-104
Identity = 190/228 (83.33%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 33  SNLPTTPKPSLKFNQKP---FPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIA 92
           S+   T  P+LKFNQKP   FPLLE S KWT+L E QQLHAQMVVTGFIHH PSLNKLIA
Sbjct: 33  SSYQPTSIPNLKFNQKPYPIFPLLEKSTKWTQLTELQQLHAQMVVTGFIHHKPSLNKLIA 92

Query: 93  HVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPD 152
           HVLSMGSLGV YAYSVF HTRELD+LTWN+MLR FVNS+MPRRAL+SY EML+ SR VPD
Sbjct: 93  HVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPD 152

Query: 153 RFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFE 212
           RFTFPSLLKGCAL LEFKVGKVLHGQ+VKY L SDLYIETTLLNMYA+CGDL SARFLFE
Sbjct: 153 RFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFE 212

Query: 213 KMGHRNKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDEVTMATL 258
           +MGHRNKVVWTSMISGYM+NHCPNEAL+LY+KM EDGFSPDEVTMATL
Sbjct: 213 RMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 260

[Close]

BLAST of Cp4.1LG03g17550 vs. TrEMBL
Match: M0U419_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 62  LKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILTWNTML 121
           ++  +QLH  MV T  +H    L++LI   +      +AYA ++F          WN+M+
Sbjct: 17  VRPLRQLHGLMVATALVHDVVPLSRLIDFCVDSRHRDIAYARALFAWVPAPTAYMWNSMI 76

Query: 122 RGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRL 181
           RG  + D P  AL  Y +ML+  R  PD FTFP  LK C+   +   G+ +HG++VK   
Sbjct: 77  RGLSDGDEPEAALALYADMLRHGRS-PDHFTFPFALKACSRIPDPSFGRCVHGRVVKAGY 136

Query: 182 DSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEALVLYEK 241
           ++D+Y+ +TL++MY SCGD+ SA  LF    +RN V WT+MI+GY  N    EA+ L+ +
Sbjct: 137 EADVYVSSTLIHMYVSCGDIPSATSLFRNAVNRNIVTWTTMIAGYAENDRAGEAIRLFSE 196

Query: 242 MVEDGFSPDEVTM 255
           M  +G  P+E+TM
Sbjct: 197 MELEGVEPNEITM 208

[Close]

BLAST of Cp4.1LG03g17550 vs. TrEMBL
Match: B9RBI6_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1677200 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 74/209 (35.41%), Postives = 127/209 (60.77%), Query Frame = 1


Query: 52  LLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRE 111
           +++   K T + + +Q+HAQM++T  I    + ++L++      S  + YA  +F   ++
Sbjct: 52  IMDMVDKCTSMTQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKLFKSIQD 111

Query: 112 LDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKV 171
            +I  WNT++R   NS  P +AL  YI+ML+   + P+++TFP LLKGC+     +  K 
Sbjct: 112 PNIFMWNTIIRALANSSNPDQALFFYIQMLRLG-VCPNKYTFPFLLKGCSFC-SIQSCKQ 171

Query: 172 LHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHC 231
           +H  ++K+  D DL++   L+ +Y+   DL  A  LF +   R+  +WT+MISGY +N C
Sbjct: 172 IHTHVLKFGSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSIWTTMISGYAQNFC 231

Query: 232 PNEALVLYEKMVEDGFSPDEVTMATLNTI 261
            NEALVL+E+MV +GF P+  T+A++ ++
Sbjct: 232 ANEALVLFERMVAEGFEPNGPTIASVLSV 258

[Close]

BLAST of Cp4.1LG03g17550 vs. TrEMBL
Match: Q84KA5_CUCME (Selenium binding protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 79/211 (37.44%), Postives = 119/211 (56.40%), Query Frame = 1


Query: 46  NQKPFPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSV 105
           NQ  + +L   +K   +KE +Q+H+ M+ T  + +    ++LI    +     + YA +V
Sbjct: 2   NQSYYTILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTV 61

Query: 106 FTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLE 165
           F  T +L +  WN+M++G+ N      AL  Y EM Q     PD FTFP +LK C+    
Sbjct: 62  FDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEM-QRKGFYPDHFTFPFVLKVCSAIDL 121

Query: 166 FKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISG 225
              G+ +H +IVK   + D+Y  + LLNMY SCGDLNS   +FE +   N V WTS+I+G
Sbjct: 122 LVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAG 181

Query: 226 YMRNHCPNEALVLYEKMVEDGFSPDEVTMAT 257
           ++ N  P EAL L++ M  +G  P+E+TM T
Sbjct: 182 FVNNDQPKEALRLFKDMENEGVEPNEITMTT 211

[Close]

BLAST of Cp4.1LG03g17550 vs. TrEMBL
Match: M5WKD0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026555mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.8e-32
Identity = 79/203 (38.92%), Postives = 117/203 (57.64%), Query Frame = 1


Query: 52  LLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRE 111
           LLE  K  +ELK   QLH  M+ T   ++   L++L+    +  +  + YA SVF    +
Sbjct: 11  LLETCKSMSELK---QLHGLMITTSVFNNVIPLSRLVDFCANSEARDLVYAKSVFHQINQ 70

Query: 112 LDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKV 171
             +  WN+M+RG+ NS+ P  +L  Y EMLQ    VPD FTFP +LK C+L   +  G+ 
Sbjct: 71  PRVYIWNSMIRGYSNSENPAESLIMYREMLQRG-YVPDNFTFPFVLKACSLITVYHYGRC 130

Query: 172 LHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHC 231
           +H  IVK   + D+Y  T LL+MYASC D+NS   +F+ +   N V WTS+ISG++ N+ 
Sbjct: 131 VHNCIVKTGFELDMYASTCLLSMYASCADMNSGLKVFDNIPKWNVVAWTSLISGFVGNNQ 190

Query: 232 PNEALVLYEKMVEDGFSPDEVTM 255
             EA+ +++ M      P+E TM
Sbjct: 191 ATEAIKVFKDMELQNVQPNEFTM 209

[Close]

BLAST of Cp4.1LG03g17550 vs. TAIR10
Match: AT3G05240.1 (AT3G05240.1 mitochondrial editing factor 19)

HSP 1 Score: 127.9 bits (320), Expect = 9.9e-30
Identity = 70/208 (33.65%), Postives = 114/208 (54.81%), Query Frame = 1


Query: 51  PLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMG-SLGVAYAYSVFTHT 110
           P+L   +    L E  QLH  M+ +  I +   L++LI    +   ++ ++YA SVF   
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 111 RELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVG 170
               +  WN+M+RG+ NS  P +AL  Y EML+     PD FTFP +LK C+   + + G
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLR-KGYSPDYFTFPYVLKACSGLRDIQFG 127

Query: 171 KVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRN 230
             +HG +VK   + ++Y+ T LL+MY  CG++N    +FE +   N V W S+ISG++ N
Sbjct: 128 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNN 187

Query: 231 HCPNEALVLYEKMVEDGFSPDEVTMATL 258
           +  ++A+  + +M  +G   +E  M  L
Sbjct: 188 NRFSDAIEAFREMQSNGVKANETIMVDL 214

[Close]

BLAST of Cp4.1LG03g17550 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-29
Identity = 61/198 (30.81%), Postives = 110/198 (55.56%), Query Frame = 1


Query: 57  KKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILT 116
           ++   L++ +Q H  M+ TG      S +KL A         + YA  VF    + +   
Sbjct: 38  ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFA 97

Query: 117 WNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQI 176
           WNT++R + +   P  ++ ++++M+  S+  P+++TFP L+K  A      +G+ LHG  
Sbjct: 98  WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 157

Query: 177 VKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEAL 236
           VK  + SD+++  +L++ Y SCGDL+SA  +F  +  ++ V W SMI+G+++   P++AL
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 237 VLYEKMVEDGFSPDEVTM 255
            L++KM  +      VTM
Sbjct: 218 ELFKKMESEDVKASHVTM 235

[Close]

BLAST of Cp4.1LG03g17550 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-29
Identity = 80/230 (34.78%), Postives = 124/230 (53.91%), Query Frame = 1


Query: 18  SPMILTQKLFVIKIPSNLPTTPKPSLKFNQKPFPLLEHSKKWTELKEFQQLHAQMVVTGF 77
           SP+ +    +      +    P  S++ N     LL + K    L+  + +HAQM+  G 
Sbjct: 6   SPLTVPSSSYPFHFLPSSSDPPYDSIR-NHPSLSLLHNCKT---LQSLRIIHAQMIKIGL 65

Query: 78  IHHTPSLNKLIAH-VLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRS 137
            +   +L+KLI   +LS    G+ YA SVF   +E ++L WNTM RG   S  P  AL+ 
Sbjct: 66  HNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKL 125

Query: 138 YIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYA 197
           Y+ M+    ++P+ +TFP +LK CA S  FK G+ +HG ++K   D DLY+ T+L++MY 
Sbjct: 126 YVCMISLG-LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 185

Query: 198 SCGDLNSARFLFEKMGHRNKVVWTSMISGY-MRNHCPNEALVLYEKMVED 246
             G L  A  +F+K  HR+ V +T++I GY  R +  N   +  E  V+D
Sbjct: 186 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230

[Close]

BLAST of Cp4.1LG03g17550 vs. TAIR10
Match: AT3G22690.1 (AT3G22690.1 Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-28
Identity = 75/222 (33.78%), Postives = 120/222 (54.05%), Query Frame = 1


Query: 37  TTPKPSLKFNQKPFPLLEHS-KKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMG 96
           TT KPSL    K       S K    + E +  H  +   G  +   ++ KL+A    +G
Sbjct: 19  TTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELG 78

Query: 97  SL-GVAYAYSVFTHTRELDI-LTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTF 156
           +   +++A  VF ++        +N+++RG+ +S +   A+  ++ M+  S I PD++TF
Sbjct: 79  TRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMN-SGISPDKYTF 138

Query: 157 PSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGH 216
           P  L  CA S     G  +HG IVK     DL+++ +L++ YA CG+L+SAR +F++M  
Sbjct: 139 PFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSE 198

Query: 217 RNKVVWTSMISGYMRNHCPNEALVLYEKMVED-GFSPDEVTM 255
           RN V WTSMI GY R     +A+ L+ +MV D   +P+ VTM
Sbjct: 199 RNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTM 239

[Close]

BLAST of Cp4.1LG03g17550 vs. TAIR10
Match: AT2G34400.1 (AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-28
Identity = 67/201 (33.33%), Postives = 110/201 (54.73%), Query Frame = 1


Query: 57  KKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILT 116
           KK   + + +Q+ AQM+    +H     N LI   + +G     Y+  +F+ T E +  +
Sbjct: 45  KKCISVNQLRQIQAQML----LHSVEKPNFLIPKAVELGDFN--YSSFLFSVTEEPNHYS 104

Query: 117 WNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQI 176
           +N M+RG  N+     A  S    +++S + PD+FT+  +   CA   E  VG+ +H  +
Sbjct: 105 FNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSL 164

Query: 177 VKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEAL 236
            K  L+ D++I  +L+ MYA CG +  AR LF+++  R+ V W SMISGY       +A+
Sbjct: 165 FKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAM 224

Query: 237 VLYEKMVEDGFSPDEVTMATL 258
            L+ KM E+GF PDE T+ ++
Sbjct: 225 DLFRKMEEEGFEPDERTLVSM 239

[Close]

BLAST of Cp4.1LG03g17550 vs. NCBI nr
Match: gi|659075601|ref|XP_008438231.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis melo])

HSP 1 Score: 390.6 bits (1002), Expect = 2.3e-105
Identity = 192/223 (86.10%), Postives = 202/223 (90.58%), Query Frame = 1


Query: 38  TPKPSLKFNQKP---FPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSM 97
           T KP LKFNQKP   FPLLE S KWT+L EFQQLHAQMVVTGFIHH PSLNKLIA VLSM
Sbjct: 20  TAKPHLKFNQKPYPIFPLLEKSTKWTQLTEFQQLHAQMVVTGFIHHKPSLNKLIALVLSM 79

Query: 98  GSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFP 157
           GSLGV YAYSVF HTRELDILTWNTMLRGFVNS+MPRRAL+SY EML+ SR VPDRFTFP
Sbjct: 80  GSLGVGYAYSVFAHTRELDILTWNTMLRGFVNSNMPRRALQSYTEMLEQSRNVPDRFTFP 139

Query: 158 SLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGHR 217
           SLLKGCALSLEFKVGK+LHGQ+VKY L SDLYIETTLLNMYA+CGDL SAR LFE+MGHR
Sbjct: 140 SLLKGCALSLEFKVGKILHGQVVKYMLHSDLYIETTLLNMYAACGDLRSARLLFERMGHR 199

Query: 218 NKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDEVTMATL 258
           NKVVWTSMISGY +NHCPNEAL+LYEKM EDGFSPDEVTMATL
Sbjct: 200 NKVVWTSMISGYTKNHCPNEALLLYEKMEEDGFSPDEVTMATL 242

[Close]

BLAST of Cp4.1LG03g17550 vs. NCBI nr
Match: gi|700201515|gb|KGN56648.1| (hypothetical protein Csa_3G127110 [Cucumis sativus])

HSP 1 Score: 387.5 bits (994), Expect = 2.0e-104
Identity = 190/228 (83.33%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 33  SNLPTTPKPSLKFNQKP---FPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIA 92
           S+   T  P+LKFNQKP   FPLLE S KWT+L E QQLHAQMVVTGFIHH PSLNKLIA
Sbjct: 33  SSYQPTSIPNLKFNQKPYPIFPLLEKSTKWTQLTELQQLHAQMVVTGFIHHKPSLNKLIA 92

Query: 93  HVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPD 152
           HVLSMGSLGV YAYSVF HTRELD+LTWN+MLR FVNS+MPRRAL+SY EML+ SR VPD
Sbjct: 93  HVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPD 152

Query: 153 RFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFE 212
           RFTFPSLLKGCAL LEFKVGKVLHGQ+VKY L SDLYIETTLLNMYA+CGDL SARFLFE
Sbjct: 153 RFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFE 212

Query: 213 KMGHRNKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDEVTMATL 258
           +MGHRNKVVWTSMISGYM+NHCPNEAL+LY+KM EDGFSPDEVTMATL
Sbjct: 213 RMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 260

[Close]

BLAST of Cp4.1LG03g17550 vs. NCBI nr
Match: gi|449433141|ref|XP_004134356.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.6e-90
Identity = 163/186 (87.63%), Postives = 174/186 (93.55%), Query Frame = 1


Query: 72  MVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPR 131
           MVVTGFIHH PSLNKLIAHVLSMGSLGV YAYSVF HTRELD+LTWN+MLR FVNS+MPR
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 132 RALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTL 191
           RAL+SY EML+ SR VPDRFTFPSLLKGCAL LEFKVGKVLHGQ+VKY L SDLYIETTL
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 192 LNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDE 251
           LNMYA+CGDL SARFLFE+MGHRNKVVWTSMISGYM+NHCPNEAL+LY+KM EDGFSPDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 252 VTMATL 258
           VTMATL
Sbjct: 181 VTMATL 186

[Close]

BLAST of Cp4.1LG03g17550 vs. NCBI nr
Match: gi|769808238|ref|XP_011624587.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Amborella trichopoda])

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 103/252 (40.87%), Postives = 144/252 (57.14%), Query Frame = 1


Query: 35  LPTTPKPSLKFNQKP-FPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLS 94
           +PT+   SL       FPLLE   K+TE+K+ QQ+HAQM VTG I HT +L K I+ + +
Sbjct: 12  IPTSESNSLSMKTHHLFPLLE--TKFTEVKQLQQVHAQMTVTGLIKHTGALAKFISSLSN 71

Query: 95  MGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTF 154
            G+L  AYA  V T+     ++ WNT++R  +  ++P+ A+  Y+ M+  S   PD +TF
Sbjct: 72  FGNL--AYAMVVCTYVDHPKVVAWNTIIRASLVQNLPKMAIMVYLNMIHESITYPDNYTF 131

Query: 155 PSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSARFLFEKMGH 214
           PSLLK  A  +EF  GK LHGQ VK+ L+ DLYIETTL+ MY   GDL SA  LF +MG 
Sbjct: 132 PSLLKASAQLMEFTTGKALHGQTVKFGLNLDLYIETTLIKMYTDFGDLYSAEKLFGRMGA 191

Query: 215 RNKVVWTSMISGY-------------------------------MRNHCPNEALVLYEKM 255
           +N + WT++I+GY                               ++N+   EAL L++KM
Sbjct: 192 KNSIAWTTLITGYAQKGYVDESRNMFDEMPQRNVVSWSAMILGYVQNNQCFEALRLFKKM 251

[Close]

BLAST of Cp4.1LG03g17550 vs. NCBI nr
Match: gi|672194266|ref|XP_008776247.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Phoenix dactylifera])

HSP 1 Score: 157.9 bits (398), Expect = 2.5e-35
Identity = 84/233 (36.05%), Postives = 135/233 (57.94%), Query Frame = 1


Query: 26  LFVIKIPS-NLPTTPKPSLKFNQKPFPLLEHSKKWTELKEFQQLHAQMVVTGFIHHTPSL 85
           LF   +PS +  T P  ++K    P PL   + + + +K+  Q+HAQMVV+G IH   + 
Sbjct: 8   LFKFPLPSFHSATIPSKAIK----PPPLSLLADRCSSMKQLLQVHAQMVVSGRIHDNYAA 67

Query: 86  NKLIAHVLSMGSLGVAYAYSVFTHTRELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWS 145
           ++L+A      S  + +A ++F HT + +   WNT++R   +S  P  A+  YI M    
Sbjct: 68  SRLLASAALSPSGDLHHALALFAHTPDPNSFMWNTLIRALADSPSPSDAIHLYIRMKMLG 127

Query: 146 RIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKYRLDSDLYIETTLLNMYASCGDLNSA 205
            + P + TFP +LK C         + L   I+K+ LDSDLY+   L+  YA+C  ++ A
Sbjct: 128 -LPPGKHTFPFVLKACVNVHSLSTSQQLQAHILKHGLDSDLYVINGLVRCYAACELVHGA 187

Query: 206 RFLFEKMGHRNKVVWTSMISGYMRNHCPNEALVLYEKMVEDGFSPDEVTMATL 258
           R LF++   RN ++WT+MISGY+ N C NEALVL+++M++ G  P + T+A++
Sbjct: 188 RRLFDEAPERNLIIWTTMISGYVHNFCSNEALVLFDRMIQTGVEPGDATLASV 235

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g17550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP214_ARATH	1.8e-28	33.65	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]
PP175_ARATH	5.1e-28	30.81	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
PPR21_ARATH	8.7e-28	34.78	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PP249_ARATH	2.5e-27	33.78	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN...	[more]
PP184_ARATH	3.3e-27	33.33	Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG03g17550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4G7_CUCSA	1.4e-104	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127110 PE=4 SV=1	[more]
M0U419_MUSAM	2.8e-33	38.34	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
B9RBI6_RICCO	1.1e-32	35.41	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]
Q84KA5_CUCME	1.1e-32	37.44	Selenium binding protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5WKD0_PRUPE	1.8e-32	38.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026555mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g17550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05240.1	9.9e-30	33.65	mitochondrial editing factor 19	[more]
AT2G29760.1	2.9e-29	30.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	4.9e-29	34.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22690.1	1.4e-28	33.78	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatrico...	[more]
AT2G34400.1	1.9e-28	33.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Cp4.1LG03g17550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075601\|ref\|XP_008438231.1\|	2.3e-105	86.10	PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis m...	[more]
gi\|700201515\|gb\|KGN56648.1\|	2.0e-104	83.33	hypothetical protein Csa_3G127110 [Cucumis sativus]	[more]
gi\|449433141\|ref\|XP_004134356.1\|	1.6e-90	87.63	PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis s...	[more]
gi\|769808238\|ref\|XP_011624587.1\|	1.8e-41	40.87	PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Amborella...	[more]
gi\|672194266\|ref\|XP_008776247.1\|	2.5e-35	36.05	PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Phoenix d...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g17550.1	Cp4.1LG03g17550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 189..212 score: 0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 215..257 score: 5.3E-10coord: 113..161 score: 1.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 217..251 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 113..148 score: 8.999coord: 215..249 score: 11.937coord: 184..214 score: 7.432coord: 149..183 score: 5
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 31..257 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g17550	CmaCh14G019530	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g17550	CmoCh14G020130	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g17550	Carg14868	Silver-seed gourd	carcpeB0884

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g17550	Cp4.1LG08g02240	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g17550	Silver-seed gourd	carcpeB1331
Cp4.1LG03g17550	Silver-seed gourd	carcpeB1505
Cp4.1LG03g17550	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g17550	Cucumber (Chinese Long) v3	cpecucB0764
Cp4.1LG03g17550	Cucumber (Chinese Long) v3	cpecucB0766
Cp4.1LG03g17550	Cucumber (Chinese Long) v3	cpecucB0785
Cp4.1LG03g17550	Wax gourd	cpewgoB0759
Cp4.1LG03g17550	Wax gourd	cpewgoB0784
Cp4.1LG03g17550	Cucurbita pepo (Zucchini)	cpecpeB184
Cp4.1LG03g17550	Cucurbita pepo (Zucchini)	cpecpeB243
Cp4.1LG03g17550	Cucurbita pepo (Zucchini)	cpecpeB339
Cp4.1LG03g17550	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g17550	Cucumber (Gy14) v1	cgycpeB0965
Cp4.1LG03g17550	Cucurbita maxima (Rimu)	cmacpeB402
Cp4.1LG03g17550	Cucurbita maxima (Rimu)	cmacpeB837
Cp4.1LG03g17550	Cucurbita maxima (Rimu)	cmacpeB840
Cp4.1LG03g17550	Cucurbita maxima (Rimu)	cmacpeB926
Cp4.1LG03g17550	Cucurbita moschata (Rifu)	cmocpeB364
Cp4.1LG03g17550	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g17550	Cucurbita moschata (Rifu)	cmocpeB860
Cp4.1LG03g17550	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g17550	Wild cucumber (PI 183967)	cpecpiB633
Cp4.1LG03g17550	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g17550	Cucumber (Chinese Long) v2	cpecuB629
Cp4.1LG03g17550	Bottle gourd (USVL1VR-Ls)	cpelsiB482
Cp4.1LG03g17550	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g17550	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g17550	Watermelon (Charleston Gray)	cpewcgB565
Cp4.1LG03g17550	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g17550	Watermelon (97103) v1	cpewmB625
Cp4.1LG03g17550	Silver-seed gourd	carcpeB0327
Cp4.1LG03g17550	Melon (DHL92) v3.5.1	cpemeB552
Cp4.1LG03g17550	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g17550	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g17550	Cucumber (Gy14) v2	cgybcpeB412
Cp4.1LG03g17550	Cucumber (Gy14) v2	cgybcpeB413
Cp4.1LG03g17550	Cucumber (Gy14) v2	cgybcpeB834
Cp4.1LG03g17550	Melon (DHL92) v3.6.1	cpemedB655
Cp4.1LG03g17550	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g17550	Melon (DHL92) v3.6.1	cpemedB696