Cp4.1LG03g16810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g16810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cp4.1LG03 : 13041484 .. 13049760 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATGTAATTCCTCGTAGAAACATATAGAACTTCAGAAAATAGATTTGCACGCCAAAATAGAAGAAATGATCCAAACCTGCCAATCAGGCTGGAGAGCGGGTGAATTTGCACCCAGTTTGCTCGTCAGCTTCCTCTTTAAACCTTCAATTTCTGCAGATGTTAAAACAAACATGAGAGAGATTTTACTCAATGGGATGGGGGGGGGGGCTTGAATTGTATATAAAATCTTGCCATTTTCTCCTGGCTTCAACCGGCCCCCAGGGAGCTTGCAAAAGGTATTGCCTATTTGCAGAAGTAGAATATGGGGATGGTTATGTTCTTGCACCTGTGGAATTGAAAGGGGAAAAAAATGAAAAGATAAAATTACACCAATACATGACTCTCTTGAATATCAGTCACTAAATTGCAGAAACTAAAGAGAGACTTAGTGAATTTAAAAGACATTCAGTGCCCAACTCACGAAGGCATGAAACTGGAATTCTTTGGTCTAATTGTGAAATCTCACATCAGGAATGTGGAAACCTCTCCCTAGTGAACACGTTTTAAAATCTTAAGGGGAAGCCCGGAAGGGGAAAGCAAAGAGGACAATATATGCTAGCGGTAGGCTTGAACTGCTACAAATGGTATCAGAGTCAAACACCGGGAGGTGAAGGGGTGGATTGTGAGAACCCACATCGGTTGGAGAGGGGAACGAAATATTCCTTATAAGGGTGTAGAAACCTCTCCCTAGTGGACGCGTTTTAAAACTTTGAGGAAAAGCCTATAGAGGACAATATCTTCTAGCGGTGGGCTTGGACTGTTACACTAATTCTATCAAAGCTGCAGTGGAAATTATAGGCTGCGAGAAACTACAAAGTCTTCAAACACAAATCTTGGGCTCCTCTTGGTGACCCTAAAAACGTTGTCTGTTGTAATCACAGTGTGCCTTGAATATTTGAGGTCCCATTCTGTAAACCCCTTAAGCCGTGGATTGGATTGCTTATCCTCCTGTTTTTGGACTCCTTTCGATTCATCAACACGTTCTTTTTTTCTTATCAAATTTTGAAAGGTTAGGCTGCCCCTGTATTTCAGCATCCAACAGATTTCTCTTTAAATCAAGCTTCTTGAGACCTCGCATCTCAACCAATATTGGTTATTCATGTTTTTCCCTTTTTTTTTTTTGGAAGATAAAGTCTAGAGAAGAGGGAGGCAAATGGCCACTCTCCTTTTTCCGGCTAAAATTCTTCCAAAATTTAATTGGATTCCCTTCCAATTTTCAACAGAATGTAATTATTAGTTTCCTAAATGAACTTGGAGATATAAGTCTAAGGACATACAGCAGTATTATTACCTCTCCTTGTTGTAAATCACCTCCCTGATTGAGCTCTGATTTCCGGCTCATAAAAAAATTGAAGTCCTATTCATTTTTCATCCCTGCAAACAAGGGCCTCATGCCCGACTGAGATAACAGTAAACGATCCACATTCTTCAACGTCACTCAGATTTTTCAATGTTAGTGTTACAGTAGGCACAAAAACATAAGTACCATTGACATATTACAATTGATTAATCTAGATGCCGTTTCTGATTATGCAGCGTTAGAGATGTCGTTCTAGATCCAATCTATCTGTTTCATCCAAGACCTTTCTTATTAAGTTCTGATGTAAGAAAATGCCAGTCAACATACTGTGTGCCTTCTTGAGATCCACCTTAAGAACCAAGCCCTTTTTTCTAGTTTCCATTTGTCCACCACTACATTGGCAACTAAAACAACATCCACGTTTGTCTATTCCCTGTTCAATGGTTCTGAATGATAGCCCTTGGCAGTGTTTGCTTTTGTCTATCAAGTTTCCACATACACTTGAGCTAAAAGTTTATCAATAAAGGTGGTTAGCAGATGCATTCGAATCTCCAACCTCGGTCGGCTTGGTCTTCTTAGAGTCTAGAGATATGAAATGAAATATCTTCAGAACATCTATGTTCCGATGTGTCCTTCACAGCCTGATGCTTACCTTTTCCATACCATCACCAGTAAAACCTCTTTTCTTTAAAAGGCTACTTAATCTTCCTTATTATTAGACCCAACGGGATCCTAATCAAGAGCTTCAAGGAGAAAGTAAATTCCTTCAAACCTAGAATAAAGAGAAGAGATCCTCTTCGGTTCTCAAGCTGGCCTACTTAACAAAGCATGTACCCATCTATTGTCATGTCACCATCTCACTAGTAAAATGGCATTTAGACGATGACCAGGCTGGGAAGCACAATGCAATGCACTGAAATCCTACTGGTTCTTCCAAGTGCTTGCAGTTAGACTTTAATTTCCTCCACAAATTCATAAATAAGTTGTTAATGCATGGTAGGCAATTCCTAAAGCATCAACTTCAATGAGCTTGTTTTACATTTTGCTACTGAATTTTTAGGTCAATTCTGAATCCAACTTGCGGAGGCTTAAATCCTAAAAGATTTTGGATATTTTGGAGTTGTTTTACCAAATACATAAATGTCAGTTATAGAGCTATTAAAACATCTACTTTAGATTTGCAACCAAAAACAGATTAATTAATGTATTTGACATCAAATGTAATCAGTATTTGATATATCACGGATGGGAAGATCCCATGTTAACACATACAAATATTTCATTGGATGCTTGCTTTTGGTATAGTCTAAAAGATGATAATGATGAATGTTCAGATTTAGTGATCCCTGTCTTTCAATAAGCACAAGGATTCAACAACACAATTTTCCCAGCTATTTGCATGCGTATATGTAAGTAATGAAGACATTTGCAATTATTCACGATTCACAACTGAAGACACAAACCATGACATCCAACTACTACATTTGTATCCTAATGGTCCATTTAAACGTTAATTTTTCAAAAAAGTATTAATAACGAAGCAAGGCAATGAGTACATTAAGATGAAATATGAGCACTGACCAGCAGAATTGCTTCAACACTTGTCCTCATGCCTTCCTTCATATAGCTGTGAACCAAACACCAGTACATGTTACTCATTCCACTCAATGCCCCTCCAAGCCCGGTAAATGATAGATCACAGGCCAGGAAGAAGCAAAGAAACAAGGTAGCAATAAGAAAGCACTAAGTTTATCTATGAACAAATGGCTTGAAATTACTACAGCTTCTTCCACGATTTCATGTAATGCTATACACATCAAATATAAAATGACCAAGAATCCACCATAAGAAACAGCCAAATTTCCTAACTTTCAAGACCAACACAAAACTAAGGCGGTGAAAAAAAAAAAATCTAGGGTTTAAGGAATCGAGTAAATTTGCAGTACTTGACTTTCATGCGAGCAAGACGATCGGCGACGGAGGTGTCCTTCTCGAGCTTCGGCTCTTTGGTACCGAAAGTGTAGCTGGAAAGTGGATAGGTGTTCACCACCGGCGACGTCACCATGGCTGTGTTCACTCTGCAGCTGCCGGTCAAAGGCGGGAAGATGTAGAAAAAACCTGCGATCGGCCCTTTGCAAGCTCTGCCGGCTAATTGGTTTTAATGCTTTTACGTGCGAGTTTTGATTGAATATCTCTCGAAATAATTTGTCAAAATAACCCCAAATTTGTAAAAATGGCACTTAAGGGTGTTTCATATACCTCGATAACCCAATCACCCCGACTACCAAACTCAGGCCCGGGTTAGCTTTTTCCTTCATTTGGGTCCGATTAAATTTTTTAAAACAAGAATTTCGAGTCAGGTCGCGGTTGACATTTTTTTGGTCAACCAATCAACCCTAGGGTTACAACCCAATCCTATTTTGAAAATTGTCACGAATATTAAGAAGAATTGACGTTTAAAACCGATATCAGTGGTGCATTATGACTTGTGAGTGTTCGATATTTGAGCTCTATAAAATTTTAGTTATTAACCTAATATGTATGGTAAATAAATATAAAATTTTAAATAATTAAAAAAAGAACTGACAACTGAACTCAACTCGATTACCTCTATTTGAGTAACTTCCACGTAACTTTATATTTCTTTAACTATCTATGATTATCATACTAAACTTTGGATTAGTATTTGGACCGTCAATTAAACTTGCAGCGACATGATCTTTAGATGTCGAGTCACATTTTATTTACTTTATTTATTTTTTTAATTATTTATATTTTTAGTTTATATTATTCAAATGTCTAAATTACCACCATTTAGAGCTTGGGTGGGAGAAACAATGAAGGGCATTTTCGGAAACAAGAAGGCCATTCTAACAAAATTGACGATATTTTAACAAAAAGTGATATTTAGCCCAAATTATCGTTGTACATGGTTACTGAAGTTAGGACTGCCCAGTCAAATTCTCGCGGCAAATCATTCTTCCGTAGGCAAGCTCCGAGCGGTGAGCGGCTGCTTGTATTCTACCCTTTGCGCTGTGTTTACTATCCTTTCAGTCGAAGATTGTTCTGTTTATTTCAAGGTAGGTACCATCTTTCAGCTTGTTGATGCGTTTATTGTTGTTTATGCGTGCATGTGTGTTGGTGTATGATTTTGATTTTTGAACCACGCACCGTTAGCTCATTAGCTTCACAATCTTAATTTCGGTTTGAAAGTTGATCATGGCGCTGTGTTCTGGTTGAGTAGGTGGAAGAAACTTGCAGTATGAGTGAGGGTCTGTAACTTAAAGATTTTGCAGAAGGCCTTCTTATCTCGTTTGGTTGATTTGTTAGGCTTTTCATCTGTAGAGTTTCTACTTCTTTGTTTGTTCCTGTGTTACTTTTGTGTTTAGATGAATTCTGGTTGTAGAAAATACTATTTCTGAATTAGATTGGCGGAGAATTGGATCCTTGGAATCTGATTGGTTTAATTGACACCATGTGAGTAAGCTGCTTCTAAGGCTTTTCCTTACTATGAACAATGTGATTGCTGAAAACTTCCGGGAAATGGAAGAGGAATCTGGTTTTAAAGTTTAGGAGAAATCTGAATAAAGTAAAATAAGAAAGGACGAGGCGTCCAGATTGTTGTTTATGCTGGGAAACTGTTATTTAATCTAAGAGAATGACAACACGGCGTGCCTGCTTGCATAATCTTCTATTGAACTAAGAACAACCCAAGTCACTGTCAAAGGATTCGATAATTTGTGAGTATATACAAGAAATGAACCGGGGTACTCGTCCAAACTGATGCTGTTACGTGCAAAAGCTAGTTTCCAACTATTTTTTCCCAGCATGGTTAAAATCCTTAGAGCGGAAATTGGCGTTTTGTTAGGAATCACGGCTCTCCACAATGGTATGATATTGTCTACTTTGAGCATAAACTCTCATGATTTTGCTTTTGGTTTCCTGAAGAAGCCTCGTACCACTGGAGATGTATTCCTTACTTATAAACCCGTGATCATTCCCTAAATTAGCTAATGTGGGACTCCCTCCCAACAATCATCAACAATCCTCCCCTCGAACAAGGTACACCATAGAGCCTCCCTTGAGACCTATGTAGCCCTCGAACAATTTCCCCTTAATCGAGGCTCGACTCCTTTCTCTGGAGCCCTCGAACAAAGTACACCCTTTGTTCAACACTTAAGTCACTTTTGACTATACCTTTGAGGCTCACAACTTTTTTGTTCGACATTTGAGGATTCTATTGACATGACTAAGTAAAGGACATGACTTTGATACCATGTTAGGAATAACGACTCTCCACAAGGGTATGTAGTCCACAATGGTTTTTCTTTTGGTTTCCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCATGATCATTCCCTAAATTAGTCAACGTAGGATTCCCTCCCAACGATCCTCAACAGTTTCTTCCTTAAGATGTTTGTGGACCAGTACTCTCTTAGCTTTTTCTTGGGGAATTTGGAAGAAGGGAATCTGAACACTCTTCTTTGATGTCTAGTATATATTGGGACGTGTTTATTCCCAAATGCTTCAAGTTGAGATATCTTTATAGAGATGTATTAGCTGCTTGCTTCTTTGTTCATTAGAGAATGTCTTTGGAATCTCCTTTGGCTTTTTTCAGATTACTTTTCTAACTTATCTCGTAATTATTTGTGATTGTCTTTGTCTTGAGCAAGACAGGAAGGGCGTGGCTAAAGCTTCTCTATCTGCCAGTTTTGTGTGTGAAGCCATTCAAATGTGCAGCGTCCTAACTCGAACGCCCTCTTGGTTTTCCACTCGAAAGCTCTTTGAGCAGAAGCTATCAGATCTCCACAAGTGCACAGACCTCAACCAAGTGAAGCAACTCCACGCTCAAATCCTCAAATCCAATCTCCACCTCGACCTCTATGTTGCTCCCAAACTCATATCTGCTTTCTCTCTTTGCCGCCAAATGCCCCTCGCCACCAACGCTTTCAATCAAGTTCAATATCCAAATGTCCATTTGTACAACACTCTGATTCGAGCCCACGCCCAGAATTCACAACCTTCACAGGCCTTTTCCACTTTCTTCACCATGCAATTTGATGGATTATACCCCGATAATTTCACTTTCCCGTATCTTCTGAAAGCTTGTACTGGGAATGGGTGGTTGCCAGTTATTGAAATGGTACACGCCCAAATTGAGAAATTTGGTTTCATGTCGAATGTATTTGTGCCGAATTCTCTTATTGATTCATATTCCAAATGTGGGTCTGGTGGAATTTTGACAGCGAAGAAGTTGTTTGTGTCAATGGGGGATTGTAGGGATGTTGTGTCATGGAATTCAATGATCTCTGGATTTGCAAAGGGTGGTTTGTACGAAGAAGCTCGGAAGGTGTTCGATAAAATGCCTATAAGGGATAGTATTAGTTGGAACACAATGTTGGATGGGTACGTTAAAGCTGGGAAAATGGATGATGCATTTAAATTGTTTGATGCAATGCCTGAGAGGAATGTTGTCTCTTGGTCGACAATGTTGTTGGGGTACTGCAAGGTAGGGGATATGGAGATGGCACAAATGTTGTTCGATAAAATGCCTACGAGGAATTTGGTTTCTTGGACCATAATTATCTCTGGCTTTGCTGAGAAAGGGCTAGCCAAAGTAGCCATTGGCTTGTTTGATCAAATGGAAGAGGCTGGCGTGAAGTTAGACAATGGGGCAGTAATAAGTATATTGGCTTCTTGTGCTGAGTCTGGTTTGCTTGGGCTTGGTGAGAAAATACATGCTTCCATTAAGAACCACAATTTCAAATGTACTACTGAAATCTCCAATGCTTTGGTTGATATGTATGCAAAATGTGGTAGGCTGGATATTGCATACAATGTCTTTAACGACATACAAAACAAAGATGTTGTGTCTTGGAATGCTATGCTTCATGGACTGGCAATGCATGGGCACGGAGAGAAAGCGCTCGAGCTTTTCAAAAGAATGAAAGAGAAGGGCTTCTCCCCTGACAAAGTTACTATGATCGGAGTCTTGTGTGCTTGTTCGCATGCGGGATTGATCGATGATGGCATTCGATACTTCTCTTCAATGGAAAAGAACTATGCCCTTGTTCATGAAATCGAGCATTACGGTTGCATGGTAGACCTTTTGGGTCGCAAGGGAAGGCTTGAAGAAGCCATCAGGCTCATTCGCACCATGCCAATGGAACCAAATGTCATCATCTGGGGCACCCTTTTAGGGGCATGTCGTATGCATAATGCTGTCGAACTTGCAAGAGAGGTTCTTGATCATTTGGTTAAGTTGGAACCATCTAATCCGGGTAATTTATCCATGTTGTCGAACATATATGCTGCAGCAGGCGATTGGGACTGTGTTGCCGATGTGAGGTTGAGAATGCGGAGTATTGGAACTCAAAAACCATCGGGTGCTAGTTCCATCGAGGTCAATAATGAGGTTCATGAATTTACAGTGTTCGATCGATCACATCCGAAATCTGATAAAATATATCAGATGATTAACGGATTGCGCTGTGAACTTAAACAAGTTGCATGCTTTCCAAACACGTGCTAATAGAGTTTGGAGTATCTATAGAATTGTAACGACCCAGATCCACCGCTTGCAGATATTGTCCTCTATGGGTTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGTGTCTGCTAGGGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCACCAACCAATGTGTAGAAAATCACGAGCTGCATACTGCTAGTGCAATGGAAAAATGAAGTTATCTTGAAATGTGACACAGTTGTGTAGTTGAAACAAGATGAAAGGTTCGAAAGGATATCTGAAACCTCGTACAGGATCCTTCGCACCAGAAGTTGGCCATTCCCCCATAGCAGAGCTAGAGGCAAATGGAATGACTTGA

mRNA sequence

ATGAAGAATATAAAGTCTAGAGAAGAGGGAGGCAAATGGCCACTCTCCTTTTTCCGGCTAAAATTCTTCCAAAATTTAATTGGATTCCCTTCCAATTTTCAACAGAATACCCAACGGGATCCTAATCAAGAGCTTCAAGGAGAAATACTTGACTTTCATGCGAGCAAGACGATCGGCGACGGAGGTGTCCTTCTCGAGCTTCGGCTCTTTGGTACCGAAAGTGTAGCTGGAAAGTGGATAGGTGTTCACCACCGGCGACGTCACCATGGCTGTGTTCACTCTGCAGCTGCCGGTCAAAGGCGGGAAGATTTAGGACTGCCCAGTCAAATTCTCGCGGCAAATCATTCTTCCGTAGGCAAGCTCCGAGCGATTACTTTTCTAACTTATCTCGTAATTATTTGTGATTGTCTTTGTCTTGAGCAAGACAGGAAGGGCGTGGCTAAAGCTTCTCTATCTGCCAGTTTTGTGTGTGAAGCCATTCAAATGTGCAGCGTCCTAACTCGAACGCCCTCTTGGTTTTCCACTCGAAAGCTCTTTGAGCAGAAGCTATCAGATCTCCACAAGTGCACAGACCTCAACCAAGTGAAGCAACTCCACGCTCAAATCCTCAAATCCAATCTCCACCTCGACCTCTATGTTGCTCCCAAACTCATATCTGCTTTCTCTCTTTGCCGCCAAATGCCCCTCGCCACCAACGCTTTCAATCAAGTTCAATATCCAAATGTCCATTTGTACAACACTCTGATTCGAGCCCACGCCCAGAATTCACAACCTTCACAGGCCTTTTCCACTTTCTTCACCATGCAATTTGATGGATTATACCCCGATAATTTCACTTTCCCGTATCTTCTGAAAGCTTGTACTGGGAATGGGTGGTTGCCAGTTATTGAAATGGTAGGGGATATGGAGATGGCACAAATGTTGTTCGATAAAATGCCTACGAGGAATTTGGTTTCTTGGACCATAATTATCTCTGGCTTTGCTGAGAAAGGGCTAGCCAAAGTAGCCATTGGCTTGTTTGATCAAATGGAAGAGGCTGGCGTGAAGTTAGACAATGGGGCAGTAATAAGTATATTGGCTTCTTGTGCTGAGTCTGGATCCTTCGCACCAGAAGTTGGCCATTCCCCCATAGCAGAGCTAGAGGCAAATGGAATGACTTGA

Coding sequence (CDS)

ATGAAGAATATAAAGTCTAGAGAAGAGGGAGGCAAATGGCCACTCTCCTTTTTCCGGCTAAAATTCTTCCAAAATTTAATTGGATTCCCTTCCAATTTTCAACAGAATACCCAACGGGATCCTAATCAAGAGCTTCAAGGAGAAATACTTGACTTTCATGCGAGCAAGACGATCGGCGACGGAGGTGTCCTTCTCGAGCTTCGGCTCTTTGGTACCGAAAGTGTAGCTGGAAAGTGGATAGGTGTTCACCACCGGCGACGTCACCATGGCTGTGTTCACTCTGCAGCTGCCGGTCAAAGGCGGGAAGATTTAGGACTGCCCAGTCAAATTCTCGCGGCAAATCATTCTTCCGTAGGCAAGCTCCGAGCGATTACTTTTCTAACTTATCTCGTAATTATTTGTGATTGTCTTTGTCTTGAGCAAGACAGGAAGGGCGTGGCTAAAGCTTCTCTATCTGCCAGTTTTGTGTGTGAAGCCATTCAAATGTGCAGCGTCCTAACTCGAACGCCCTCTTGGTTTTCCACTCGAAAGCTCTTTGAGCAGAAGCTATCAGATCTCCACAAGTGCACAGACCTCAACCAAGTGAAGCAACTCCACGCTCAAATCCTCAAATCCAATCTCCACCTCGACCTCTATGTTGCTCCCAAACTCATATCTGCTTTCTCTCTTTGCCGCCAAATGCCCCTCGCCACCAACGCTTTCAATCAAGTTCAATATCCAAATGTCCATTTGTACAACACTCTGATTCGAGCCCACGCCCAGAATTCACAACCTTCACAGGCCTTTTCCACTTTCTTCACCATGCAATTTGATGGATTATACCCCGATAATTTCACTTTCCCGTATCTTCTGAAAGCTTGTACTGGGAATGGGTGGTTGCCAGTTATTGAAATGGTAGGGGATATGGAGATGGCACAAATGTTGTTCGATAAAATGCCTACGAGGAATTTGGTTTCTTGGACCATAATTATCTCTGGCTTTGCTGAGAAAGGGCTAGCCAAAGTAGCCATTGGCTTGTTTGATCAAATGGAAGAGGCTGGCGTGAAGTTAGACAATGGGGCAGTAATAAGTATATTGGCTTCTTGTGCTGAGTCTGGATCCTTCGCACCAGAAGTTGGCCATTCCCCCATAGCAGAGCTAGAGGCAAATGGAATGACTTGA

Protein sequence

MKNIKSREEGGKWPLSFFRLKFFQNLIGFPSNFQQNTQRDPNQELQGEILDFHASKTIGDGGVLLELRLFGTESVAGKWIGVHHRRRHHGCVHSAAAGQRREDLGLPSQILAANHSSVGKLRAITFLTYLVIICDCLCLEQDRKGVAKASLSASFVCEAIQMCSVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYLLKACTGNGWLPVIEMVGDMEMAQMLFDKMPTRNLVSWTIIISGFAEKGLAKVAIGLFDQMEEAGVKLDNGAVISILASCAESGSFAPEVGHSPIAELEANGMT

Homology

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BLAST of Cp4.1LG03g16810 vs. Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.6e-51
Identity = 106/210 (50.48%), Postives = 135/210 (64.29%), Query Frame = 1


Query: 164 SVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSL 223
           S+  R PSW S+R++FE++L DL KC +LNQVKQLHAQI++ NLH DL++APKLISA SL
Sbjct: 4   SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSL 63

Query: 224 CRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYL 283
           CRQ  LA   FNQVQ PNVHL N+LIRAHAQNSQP QAF  F  MQ  GL+ DNFT+P+L
Sbjct: 64  CRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123

Query: 284 LKACTGNGWLPVIEMVGD----------------------------MEMAQMLFDKMPTR 343
           LKAC+G  WLPV++M+ +                            +  A  LF+KM  R
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183

Query: 344 NLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
           + VSW  ++ G  + G  + A  LFD+M +
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213

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BLAST of Cp4.1LG03g16810 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-22
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 1


Query: 189 CTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQMPLATNAFNQVQYPNVHLYNTL 248
           CT +N +KQ+H  ++  +LH D ++   L+      RQ   +   F+  Q+PN+ LYN+L
Sbjct: 24  CT-VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSL 83

Query: 249 IRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYLLKACTG------------------- 308
           I     N    +    F +++  GLY   FTFP +LKACT                    
Sbjct: 84  INGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGF 143

Query: 309 -------NGWLPVIEMVGDMEMAQMLFDKMPTRNLVSWTIIISGFAEKGLAKVAIGLFDQ 367
                     L +    G +  A  LFD++P R++V+WT + SG+   G  + AI LF +
Sbjct: 144 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 203

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BLAST of Cp4.1LG03g16810 vs. Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-20
Identity = 69/229 (30.13%), Postives = 112/229 (48.91%), Query Frame = 1


Query: 171 SWFSTRK--LFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLIS--AFSLCRQ 230
           +W ST    L    LS L KC  L  +KQ+ AQ++ + L LD + + +LI+  A S  R 
Sbjct: 43  NWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRY 102

Query: 231 MPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLY---PDNFTFPYL 290
           +  +      ++ PN+  +N  IR  +++  P ++F  +  M   G     PD+FT+P L
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162

Query: 291 LKACTG--------------------------NGWLPVIEMVGDMEMAQMLFDKMPTRNL 350
            K C                            N  + +    GDME A+ +FD+ P R+L
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222

Query: 351 VSWTIIISGFAEKGLAKVAIGLFDQMEEAGVKLDNGAVISILASCAESG 367
           VSW  +I+G+ + G A+ AI ++  ME  GVK D+  +I +++SC+  G
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLG 271

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BLAST of Cp4.1LG03g16810 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.3e-20
Identity = 65/215 (30.23%), Postives = 106/215 (49.30%), Query Frame = 1


Query: 183 LSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQ---MPLATNAFNQVQY 242
           LS LH C  L  ++ +HAQ++K  LH   Y   KLI    L      +P A + F  +Q 
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 243 PNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYLLKACTGN--------- 302
           PN+ ++NT+ R HA +S P  A   +  M   GL P+++TFP++LK+C  +         
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 303 -----------------GWLPVIEMVGDMEMAQMLFDKMPTRNLVSWTIIISGFAEKGLA 362
                              + +    G +E A  +FDK P R++VS+T +I G+A +G  
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216

Query: 363 KVAIGLFDQMEEAGVKLDNGAVISILASCAESGSF 369
           + A  LFD++    V   N    ++++  AE+G++
Sbjct: 217 ENAQKLFDEIPVKDVVSWN----AMISGYAETGNY 247

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BLAST of Cp4.1LG03g16810 vs. Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-18
Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 1


Query: 192 LNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQMPLATNAFNQVQYPNVHLYNTLIRA 251
           +NQ KQ+HA  +KS   LDL+V+  ++  +  C  M  A  AF+ +  P+   + T+I  
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592

Query: 252 HAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYLLKA---------------------CT-- 311
             +N +  +AF  F  M+  G+ PD FT   L KA                     CT  
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652

Query: 312 ---GNGWLPVIEMVGDMEMAQMLFDKMPTRNLVSWTIIISGFAEKGLAKVAIGLFDQMEE 371
              G   + +    G ++ A  LF ++   N+ +W  ++ G A+ G  K  + LF QM+ 
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712

Query: 372 AGVKLDNGAVISILASCAESGSFAPEVGH 375
            G+K D    I +L++C+ SG  +    H
Sbjct: 713 LGIKPDKVTFIGVLSACSHSGLVSEAYKH 741

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BLAST of Cp4.1LG03g16810 vs. TrEMBL
Match: A0A0A0L7H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122560 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.0e-65
Identity = 137/215 (63.72%), Postives = 154/215 (71.63%), Query Frame = 1


Query: 160 IQMCSVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLIS 219
           +QMCSV  RTPSWFSTRKL EQKLSDLHKCT+LNQVKQLHAQILKSNLH+DL+V PKLIS
Sbjct: 1   MQMCSVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLIS 60

Query: 220 AFSLCRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFT 279
           AFSLCRQM LATNAFNQVQYPNVHLYNT+IRAH+ NSQPSQAF+TFF MQ DG Y DNFT
Sbjct: 61  AFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFT 120

Query: 280 FPYLLKACTGNGWLPVIEMV----------GDMEMAQMLFDKM----------------- 339
           FP+LLK CTGN WLPVIE V           D+ +   L D                   
Sbjct: 121 FPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVS 180

Query: 340 --PTRNLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
               R++VSW  +ISG A+ GL + A  +FD+M E
Sbjct: 181 MGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPE 215

[Close]

BLAST of Cp4.1LG03g16810 vs. TrEMBL
Match: B9T3T5_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0169170 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.6e-55
Identity = 115/210 (54.76%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 164 SVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSL 223
           S+ TR P+W STR+LFE+KL DLHKCTD N +K++HAQI+K NLH DLYVAPKLISAFSL
Sbjct: 8   SLPTRAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSL 67

Query: 224 CRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYL 283
           C QM LA N FNQ+Q PNVHLYNTLIRAH QNSQ  +AF+TFF MQ +GL+ DNFT+P+L
Sbjct: 68  CHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFL 127

Query: 284 LKACTGNGWLPVIEMV----------GDM------------------EMAQMLFDKMPTR 343
           LKAC G GWLP ++M+          GD+                    A  LF +M  +
Sbjct: 128 LKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEK 187

Query: 344 NLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
           +LVSW  +I G  + G    A  LFD+M E
Sbjct: 188 DLVSWNSMIGGLVKAGDLGRARKLFDEMAE 217

[Close]

BLAST of Cp4.1LG03g16810 vs. TrEMBL
Match: M5XAE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017633mg PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 115/212 (54.25%), Postives = 143/212 (67.45%), Query Frame = 1


Query: 162 MCSVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAF 221
           MC V  R+PSW S R+L EQKLSDLH+CT+L+ +KQ+HAQILK+NLH DL+ APKLI+AF
Sbjct: 1   MC-VPVRSPSWVSRRRLLEQKLSDLHRCTNLSHIKQVHAQILKANLHQDLHTAPKLIAAF 60

Query: 222 SLCRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFP 281
           SLCRQM LA N FNQVQ PNVHLYNTLIRAH QNSQ +QAF+TFF MQ +G+YPDNFT+P
Sbjct: 61  SLCRQMALAVNVFNQVQDPNVHLYNTLIRAHIQNSQTTQAFATFFDMQLNGVYPDNFTYP 120

Query: 282 YLLKACTGNGWLPVIEMVG----------DMEMAQMLFDK------------------MP 341
           +LLKAC+G  W PV++M+           D+ +   L D                   M 
Sbjct: 121 FLLKACSGRPWFPVVQMIHTSIEKFGFCLDIFVPNSLIDTYSKCGLLGVSEAKKMFMLMG 180

Query: 342 TRNLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
            R++VSW  +I G A+ G    A  LFD+M +
Sbjct: 181 ERDIVSWNSMIGGLAKTGELGEARRLFDEMPD 211

[Close]

BLAST of Cp4.1LG03g16810 vs. TrEMBL
Match: A0A151TCD5_CAJCA (Pentatricopeptide repeat-containing protein At3g29230 family OS=Cajanus cajan GN=KK1_019314 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.9e-50
Identity = 99/208 (47.60%), Postives = 140/208 (67.31%), Query Frame = 1


Query: 168 RTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQM 227
           R P+WFS R+L E+KL+DLH+CT+L+ V Q+HAQ+LK++LH DL+VAPKLI+AFSLCR +
Sbjct: 10  RVPTWFSRRRLLEEKLTDLHRCTNLDAVNQIHAQVLKAHLHHDLFVAPKLITAFSLCRHI 69

Query: 228 PLATNAFNQVQYPNVHLYNTLIRAHAQN-SQPSQAFSTFFTMQFDGLYPDNFTFPYLLKA 287
             A N FNQV +PNVHLYNT++RAHA N S PS  F+TFF MQ +GL+PDNFT+P+LLK 
Sbjct: 70  AAAVNVFNQVPHPNVHLYNTVLRAHAHNASHPSIPFNTFFRMQQNGLFPDNFTYPFLLKC 129

Query: 288 CTGNGWLPVIEMV--------------------------GDMEMAQMLFDKMPTRNLVSW 347
           C+G   LP+++M+                           +++ A  +FD+MP R++VSW
Sbjct: 130 CSGPSSLPLVKMIHAHVQKFGFYHDIFVPNSLIDSYSRCAELDRASRVFDEMPVRDMVSW 189

Query: 348 TIIISGFAEKGLAKVAIGLFDQMEEAGV 349
             ++ G+ + G    A  LF++M E  +
Sbjct: 190 NTMLDGYVKAGEMDKAFELFERMPERNI 217

[Close]

BLAST of Cp4.1LG03g16810 vs. TrEMBL
Match: V4MM85_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003866mg PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 109/208 (52.40%), Postives = 136/208 (65.38%), Query Frame = 1


Query: 164 SVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSL 223
           S+  R PSW S+R++FE+KL DL KC +L+QVKQLHAQI++ NLH DL++APKLI+A SL
Sbjct: 4   SLPVRAPSWVSSRRIFEEKLQDLPKCANLSQVKQLHAQIIRRNLHQDLHIAPKLITALSL 63

Query: 224 CRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYL 283
           CRQM LA   FNQVQ PNVHL N+LIRAHAQNSQP QAFS F  MQ  GL+ DNFT+P+L
Sbjct: 64  CRQMTLAVGVFNQVQQPNVHLCNSLIRAHAQNSQPYQAFSVFSEMQRIGLFADNFTYPFL 123

Query: 284 LKACTGNGWLPVIEMV--------------------------GDMEM--AQMLFDKMPTR 343
           LKAC+G  WLPV++M+                          G M +  A  LF KM  R
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGAMGVKAAMKLFVKMGER 183

[Close]

BLAST of Cp4.1LG03g16810 vs. TAIR10
Match: AT3G29230.1 (AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-52
Identity = 106/210 (50.48%), Postives = 135/210 (64.29%), Query Frame = 1


Query: 164 SVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSL 223
           S+  R PSW S+R++FE++L DL KC +LNQVKQLHAQI++ NLH DL++APKLISA SL
Sbjct: 4   SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSL 63

Query: 224 CRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYL 283
           CRQ  LA   FNQVQ PNVHL N+LIRAHAQNSQP QAF  F  MQ  GL+ DNFT+P+L
Sbjct: 64  CRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123

Query: 284 LKACTGNGWLPVIEMVGD----------------------------MEMAQMLFDKMPTR 343
           LKAC+G  WLPV++M+ +                            +  A  LF+KM  R
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183

Query: 344 NLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
           + VSW  ++ G  + G  + A  LFD+M +
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213

[Close]

BLAST of Cp4.1LG03g16810 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-23
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 1


Query: 189 CTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQMPLATNAFNQVQYPNVHLYNTL 248
           CT +N +KQ+H  ++  +LH D ++   L+      RQ   +   F+  Q+PN+ LYN+L
Sbjct: 24  CT-VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSL 83

Query: 249 IRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYLLKACTG------------------- 308
           I     N    +    F +++  GLY   FTFP +LKACT                    
Sbjct: 84  INGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGF 143

Query: 309 -------NGWLPVIEMVGDMEMAQMLFDKMPTRNLVSWTIIISGFAEKGLAKVAIGLFDQ 367
                     L +    G +  A  LFD++P R++V+WT + SG+   G  + AI LF +
Sbjct: 144 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 203

[Close]

BLAST of Cp4.1LG03g16810 vs. TAIR10
Match: AT2G22410.1 (AT2G22410.1 SLOW GROWTH 1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-21
Identity = 69/229 (30.13%), Postives = 112/229 (48.91%), Query Frame = 1


Query: 171 SWFSTRK--LFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLIS--AFSLCRQ 230
           +W ST    L    LS L KC  L  +KQ+ AQ++ + L LD + + +LI+  A S  R 
Sbjct: 43  NWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRY 102

Query: 231 MPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLY---PDNFTFPYL 290
           +  +      ++ PN+  +N  IR  +++  P ++F  +  M   G     PD+FT+P L
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162

Query: 291 LKACTG--------------------------NGWLPVIEMVGDMEMAQMLFDKMPTRNL 350
            K C                            N  + +    GDME A+ +FD+ P R+L
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222

Query: 351 VSWTIIISGFAEKGLAKVAIGLFDQMEEAGVKLDNGAVISILASCAESG 367
           VSW  +I+G+ + G A+ AI ++  ME  GVK D+  +I +++SC+  G
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLG 271

[Close]

BLAST of Cp4.1LG03g16810 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-21
Identity = 65/215 (30.23%), Postives = 106/215 (49.30%), Query Frame = 1


Query: 183 LSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSLCRQ---MPLATNAFNQVQY 242
           LS LH C  L  ++ +HAQ++K  LH   Y   KLI    L      +P A + F  +Q 
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 243 PNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYLLKACTGN--------- 302
           PN+ ++NT+ R HA +S P  A   +  M   GL P+++TFP++LK+C  +         
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 303 -----------------GWLPVIEMVGDMEMAQMLFDKMPTRNLVSWTIIISGFAEKGLA 362
                              + +    G +E A  +FDK P R++VS+T +I G+A +G  
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216

Query: 363 KVAIGLFDQMEEAGVKLDNGAVISILASCAESGSF 369
           + A  LFD++    V   N    ++++  AE+G++
Sbjct: 217 ENAQKLFDEIPVKDVVSWN----AMISGYAETGNY 247

[Close]

BLAST of Cp4.1LG03g16810 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-20
Identity = 65/243 (26.75%), Postives = 115/243 (47.33%), Query Frame = 1


Query: 170 PSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKL--ISAFSLCRQM 229
           P+  +T     + +S + +C  L Q+KQ H  ++++    D Y A KL  ++A S    +
Sbjct: 21  PNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASL 80

Query: 230 PLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDG-LYPDNFTFPYLLKA 289
             A   F+++  PN   +NTLIRA+A    P  +   F  M  +   YP+ +TFP+L+KA
Sbjct: 81  EYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKA 140

Query: 290 CTGNGWLPVIEMV--------------------------GDMEMAQMLFDKMPTRNLVSW 349
                 L + + +                          GD++ A  +F  +  +++VSW
Sbjct: 141 AAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSW 200

Query: 350 TIIISGFAEKGLAKVAIGLFDQMEEAGVKLDNGAVISILASCAESGSFAPEVGHSPIAEL 384
             +I+GF +KG    A+ LF +ME   VK  +  ++ +L++CA+  +   E G    + +
Sbjct: 201 NSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL--EFGRQVCSYI 260

[Close]

BLAST of Cp4.1LG03g16810 vs. NCBI nr
Match: gi|700201399|gb|KGN56532.1| (hypothetical protein Csa_3G122560 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 137/215 (63.72%), Postives = 154/215 (71.63%), Query Frame = 1


Query: 160 IQMCSVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLIS 219
           +QMCSV  RTPSWFSTRKL EQKLSDLHKCT+LNQVKQLHAQILKSNLH+DL+V PKLIS
Sbjct: 1   MQMCSVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLIS 60

Query: 220 AFSLCRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFT 279
           AFSLCRQM LATNAFNQVQYPNVHLYNT+IRAH+ NSQPSQAF+TFF MQ DG Y DNFT
Sbjct: 61  AFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFT 120

Query: 280 FPYLLKACTGNGWLPVIEMV----------GDMEMAQMLFDKM----------------- 339
           FP+LLK CTGN WLPVIE V           D+ +   L D                   
Sbjct: 121 FPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVS 180

Query: 340 --PTRNLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
               R++VSW  +ISG A+ GL + A  +FD+M E
Sbjct: 181 MGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPE 215

[Close]

BLAST of Cp4.1LG03g16810 vs. NCBI nr
Match: gi|659075293|ref|XP_008438067.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 6.8e-63
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 1


Query: 160 IQMCSVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLIS 219
           +QMCSV  RTPSWFSTRKLFEQKL++LHKCTDLNQVKQLHAQILKSNLH+DL+V PKLIS
Sbjct: 1   MQMCSVPIRTPSWFSTRKLFEQKLAELHKCTDLNQVKQLHAQILKSNLHVDLFVVPKLIS 60

Query: 220 AFSLCRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFT 279
           AFSLCRQM LATN FNQVQYPNVHLYNT+IRAH+ NSQPSQAF+TFF MQ DG YPDNFT
Sbjct: 61  AFSLCRQMLLATNTFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGFYPDNFT 120

Query: 280 FPYLLKACTGNGWLPVIEMV 300
           FP+LLK CTGN WLPV+E V
Sbjct: 121 FPFLLKVCTGNVWLPVVERV 140

[Close]

BLAST of Cp4.1LG03g16810 vs. NCBI nr
Match: gi|296082968|emb|CBI22269.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 227.6 bits (579), Expect = 3.6e-56
Identity = 119/239 (49.79%), Postives = 155/239 (64.85%), Query Frame = 1


Query: 164 SVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSL 223
           SV  R P+W S R+L EQK+SDLH+C+ LNQVKQ+HAQ+LK+NLH + +V  KLI+AFSL
Sbjct: 2   SVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSL 61

Query: 224 CRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYL 283
           CRQM LA N FNQ+Q P+V LYNTLIRAH +NS+P  AFS FF MQ  G+  DNFT+P+L
Sbjct: 62  CRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFL 121

Query: 284 LKACTGNGWLPVIEMV--------------------------GDMEMAQMLFDKMPTRNL 343
           LKAC+G  W+ V+EM+                          G++  A+ LFD+MP R+ 
Sbjct: 122 LKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDT 181

Query: 344 VSWTIIISGFAEKGLAKVAIGLFDQME----------EAGVKLDNGAVISILASCAESG 367
           VSW  I+ G+ + G    A  LF++M           EAG+K D+G VISIL++CA SG
Sbjct: 182 VSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSG 240

[Close]

BLAST of Cp4.1LG03g16810 vs. NCBI nr
Match: gi|255584337|ref|XP_002532904.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Ricinus communis])

HSP 1 Score: 223.8 bits (569), Expect = 5.2e-55
Identity = 115/210 (54.76%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 164 SVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAFSL 223
           S+ TR P+W STR+LFE+KL DLHKCTD N +K++HAQI+K NLH DLYVAPKLISAFSL
Sbjct: 8   SLPTRAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSL 67

Query: 224 CRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFPYL 283
           C QM LA N FNQ+Q PNVHLYNTLIRAH QNSQ  +AF+TFF MQ +GL+ DNFT+P+L
Sbjct: 68  CHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFL 127

Query: 284 LKACTGNGWLPVIEMV----------GDM------------------EMAQMLFDKMPTR 343
           LKAC G GWLP ++M+          GD+                    A  LF +M  +
Sbjct: 128 LKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEK 187

Query: 344 NLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
           +LVSW  +I G  + G    A  LFD+M E
Sbjct: 188 DLVSWNSMIGGLVKAGDLGRARKLFDEMAE 217

[Close]

BLAST of Cp4.1LG03g16810 vs. NCBI nr
Match: gi|595967381|ref|XP_007217279.1| (hypothetical protein PRUPE_ppa017633mg [Prunus persica])

HSP 1 Score: 219.9 bits (559), Expect = 7.5e-54
Identity = 115/212 (54.25%), Postives = 143/212 (67.45%), Query Frame = 1


Query: 162 MCSVLTRTPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSNLHLDLYVAPKLISAF 221
           MC V  R+PSW S R+L EQKLSDLH+CT+L+ +KQ+HAQILK+NLH DL+ APKLI+AF
Sbjct: 1   MC-VPVRSPSWVSRRRLLEQKLSDLHRCTNLSHIKQVHAQILKANLHQDLHTAPKLIAAF 60

Query: 222 SLCRQMPLATNAFNQVQYPNVHLYNTLIRAHAQNSQPSQAFSTFFTMQFDGLYPDNFTFP 281
           SLCRQM LA N FNQVQ PNVHLYNTLIRAH QNSQ +QAF+TFF MQ +G+YPDNFT+P
Sbjct: 61  SLCRQMALAVNVFNQVQDPNVHLYNTLIRAHIQNSQTTQAFATFFDMQLNGVYPDNFTYP 120

Query: 282 YLLKACTGNGWLPVIEMVG----------DMEMAQMLFDK------------------MP 341
           +LLKAC+G  W PV++M+           D+ +   L D                   M 
Sbjct: 121 FLLKACSGRPWFPVVQMIHTSIEKFGFCLDIFVPNSLIDTYSKCGLLGVSEAKKMFMLMG 180

Query: 342 TRNLVSWTIIISGFAEKGLAKVAIGLFDQMEE 346
            R++VSW  +I G A+ G    A  LFD+M +
Sbjct: 181 ERDIVSWNSMIGGLAKTGELGEARRLFDEMPD 211

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g16810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP261_ARATH	4.6e-51	50.48	Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN...	[more]
PP219_ARATH	5.8e-22	30.39	Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th...	[more]
PP169_ARATH	1.9e-20	30.13	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
PPR21_ARATH	9.3e-20	30.23	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PP347_ARATH	1.0e-18	28.23	Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG03g16810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H7_CUCSA	1.0e-65	63.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122560 PE=4 SV=1	[more]
B9T3T5_RICCO	3.6e-55	54.76	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]
M5XAE6_PRUPE	5.3e-54	54.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017633mg PE=4 SV=1	[more]
A0A151TCD5_CAJCA	7.9e-50	47.60	Pentatricopeptide repeat-containing protein At3g29230 family OS=Cajanus cajan GN...	[more]
V4MM85_EUTSA	2.3e-49	52.40	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003866mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g16810 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29230.1	2.6e-52	50.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G08820.1	3.3e-23	30.39	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22410.1	1.1e-21	30.13	SLOW GROWTH 1	[more]
AT1G08070.1	5.2e-21	30.23	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	5.8e-20	26.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG03g16810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201399\|gb\|KGN56532.1\|	1.5e-65	63.72	hypothetical protein Csa_3G122560 [Cucumis sativus]	[more]
gi\|659075293\|ref\|XP_008438067.1\|	6.8e-63	84.29	PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Cucumis melo]	[more]
gi\|296082968\|emb\|CBI22269.3\|	3.6e-56	49.79	unnamed protein product [Vitis vinifera]	[more]
gi\|255584337\|ref\|XP_002532904.1\|	5.2e-55	54.76	PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Ricinus commun...	[more]
gi\|595967381\|ref\|XP_007217279.1\|	7.5e-54	54.25	hypothetical protein PRUPE_ppa017633mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g16810.1	Cp4.1LG03g16810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 318..348 score: 6.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 240..287 score: 1.4
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 318..351 score: 5.2E-6coord: 244..276 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 241..275 score: 9.81coord: 316..350 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 164..367 score: 1.9
None	No IPR available	PANTHER	PTHR24015:SF887	SUBFAMILY NOT NAMED	coord: 164..367 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g16810	CmaCh14G020230	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g16810	Cla021248	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g16810	ClCG05G001680	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g16810	Lsi05G020250	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g16810	Bhi01G000269	Wax gourd	cpewgoB0788
Cp4.1LG03g16810	CsGy3G009030	Cucumber (Gy14) v2	cgybcpeB406

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g16810	Wax gourd	cpewgoB0774
Cp4.1LG03g16810	Cucurbita pepo (Zucchini)	cpecpeB052
Cp4.1LG03g16810	Cucurbita pepo (Zucchini)	cpecpeB242
Cp4.1LG03g16810	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG03g16810	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g16810	Cucurbita maxima (Rimu)	cmacpeB639
Cp4.1LG03g16810	Cucurbita maxima (Rimu)	cmacpeB837
Cp4.1LG03g16810	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g16810	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g16810	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g16810	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g16810	Watermelon (Charleston Gray)	cpewcgB556
Cp4.1LG03g16810	Watermelon (97103) v1	cpewmB612
Cp4.1LG03g16810	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g16810	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g16810	Silver-seed gourd	carcpeB0922
Cp4.1LG03g16810	Cucumber (Chinese Long) v3	cpecucB0759