Cp4.1LG03g15280 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g15280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 7924270 .. 7924625 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGTGCTTATAACTATTCTTTGTTTTCCTTTATGAATGGAGAAAAATGAAAAGATATTGAAGACAATGTTATGGATGACCATTGTTTTTGCAGGTCTTTTAGTGGCCACTCTTGTTTATTTTCAGTTCTTTCCATCCCTATTTCATCATCATCATCAAGGTAAGATTTCTCAAAGCTTCTTTGATTTCTGAAGCCTTTAGAATGATGTCTTTGGTTTTCATGTAGATGTTTTCGTCTCGACTTCAGAACAATCTCGAACGAATGATCAAACAAGCGACATTCCAGTGAATGTTGTTGATAGGTCGATAGACATCGAAGCCCCTGCCCCCCTCGAAAGTAGAGAGAGGTGA

mRNA sequence

ATGGGTCTTTTAGTGGCCACTCTTGTTTATTTTCAGTTCTTTCCATCCCTATTTCATCATCATCATCAAGATGTTTTCGTCTCGACTTCAGAACAATCTCGAACGAATGATCAAACAAGCGACATTCCAGTGAATGTTGTTGATAGGTCGATAGACATCGAAGCCCCTGCCCCCCTCGAAAGTAGAGAGAGGTGA

Coding sequence (CDS)

ATGGGTCTTTTAGTGGCCACTCTTGTTTATTTTCAGTTCTTTCCATCCCTATTTCATCATCATCATCAAGATGTTTTCGTCTCGACTTCAGAACAATCTCGAACGAATGATCAAACAAGCGACATTCCAGTGAATGTTGTTGATAGGTCGATAGACATCGAAGCCCCTGCCCCCCTCGAAAGTAGAGAGAGGTGA

Protein sequence

MGLLVATLVYFQFFPSLFHHHHQDVFVSTSEQSRTNDQTSDIPVNVVDRSIDIEAPAPLESRER
Homology
[Close]
BLAST of Cp4.1LG03g15280 vs. NCBI nr
Match: gi|659086702|ref|XP_008444074.1| (PREDICTED: putative lipid phosphate phosphatase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 6.7e-08
Identity = 43/76 (56.58%), Postives = 47/76 (61.84%), Query Frame = 1 

Query: 1   MGLLVATLVYFQFFPSLFHHHHQDVFVSTSEQSRTNDQTSDIPVN--------------V 60
           MGLLVA LVY QFFPS   ++H+D FV T  QSRT  QTSDIPV                
Sbjct: 238 MGLLVAKLVYLQFFPS--PYYHRDDFVPTPVQSRTIVQTSDIPVQSRTTVQPSDIPAIAP 297

Query: 61  VDRSIDIEAPAPLESR 63
           V R +DIEAPAPLESR
Sbjct: 298 VGRPMDIEAPAPLESR 311

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g15280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15280 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086702|ref|XP_008444074.1|6.7e-0856.58PREDICTED: putative lipid phosphate phosphatase 3, chloroplastic [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016311 dephosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008195 phosphatidate phosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15280.1Cp4.1LG03g15280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g15280Lsi07G009320Bottle gourd (USVL1VR-Ls)cpelsiB517
Cp4.1LG03g15280CsaV3_4G010400Cucumber (Chinese Long) v3cpecucB0769
Cp4.1LG03g15280Bhi01G001682Wax gourdcpewgoB0780
Cp4.1LG03g15280CsGy4G009870Cucumber (Gy14) v2cgybcpeB554
Cp4.1LG03g15280Carg15868Silver-seed gourdcarcpeB0455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g15280Cucurbita pepo (Zucchini)cpecpeB450
Cp4.1LG03g15280Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g15280Cucurbita maxima (Rimu)cmacpeB495
Cp4.1LG03g15280Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g15280Cucurbita moschata (Rifu)cmocpeB454
Cp4.1LG03g15280Wild cucumber (PI 183967)cpecpiB619
Cp4.1LG03g15280Cucumber (Chinese Long) v2cpecuB617
Cp4.1LG03g15280Watermelon (Charleston Gray)cpewcgB573
Cp4.1LG03g15280Watermelon (97103) v1cpewmB603
Cp4.1LG03g15280Melon (DHL92) v3.5.1cpemeB590
Cp4.1LG03g15280Melon (DHL92) v3.6.1cpemedB700
Cp4.1LG03g15280Wax gourdcpewgoB0776