Cp4.1LG03g13900 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g13900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ppabcg17
Location	Cp4.1LG03 : 9202746 .. 9206938 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAATAATCCGATAAGGAGGGTCAATAATCTTTAGCTCAAATAGAGAACGAGTATGGAAACATGACGACGCTTTATGGAGATGTAGGAAAAGCATATATCAATTGGTTGGTGTGCTCAAATGGTTGAATCTCTCAACATAGCATTTCATGGATCATGTGCTAACAAAGACCTATCTTGAATACACATTCCCTGAATTCTATTGCAATAACTTTACTTCTAACAATCGTAAAAGCCGATGTTTTATTGAAAATTAGGTGGGATAGTTCTAAAAATGGGGCAACAAAGACCCTTACAGAACTGTCGAAAATGTAGCGTATTTTCTGTGGCAAGATGTTTTCAATATGGTGGCGTGTTTAACAATTATTACATGTATCATAGAGGTACCAACTTTGGAAGAACATCAGGAGGTCCATTCATCACGACATCTTATGATTACAACGCTCCACTTGATGAATATGGAAACTTGAATCAACCAAATGGAAACATCTCAAACAACTTCATACATCATTCAAACTGCGAGAAAAAATTCTAACTAATGCCAACCGCTTAGACCAAAGCTTTGATAACTCTGTAACTTTGACAAAATTCTCTAACCAAAGGGGAGATGACTCTTGCTGCCATCTATCAAGTAGTCTTGGAGGACGTTCTTCTCATGTTCGCAAAGAATGACTCGACAAAAACAGCATAAAAAACACTACAAACCAAACAATGCACGTGGGCGTGGAACGGGTCAAATTAAAAACAAAAACTCATAATTTTATTTGATGAACATTCAAATACAAACATTAATTCTACACATTTTCTTTCCCCCTTTTTCCCTTTTCCCTCTACATAGTTATACACATTACAAAACATACCACCTAAAACATTATCATCTTCTTTGGAAATTAAAAATGCTGATAGAGATAGCAAATACCGAAGCAAAAAGAACACCAAATCCGACAACAACAGAAACAGAAATGTCTACAAAATCATGTCTGAAACCAAAGTAGAGTCTAACAAATTCTTCCACAGTTTCTCCTGTTTCAAGAACATCCTTAACATCTCCAAATTGAGAGGCAACTAATCCATATAACGTCCACGCCACGGGACAAACCCAGTAGTACCATATCCACCACACTGGAATCCTCTGTCAGTTCATATGCCAGAAAAAATAAGAACACAAACAAAACAAAACTCGAACACACAACCGAAACATAACGTAACGTACCGGTTTCGGGACTACAAATCCTGAGAAGAGATTCCATAATGCAAAGAACGCAAAGGAGAGAATTGAAGCAATGTGATGATTTGGTGTCATTGCCACAGCCATCATCCCATAGAAAGTGAAGTACAGCAAAGTGAAGTACATTATGACCAAATACCACAGGAACTTAGCCACGGTCCATTCAAATCCAATCATTGAGTACACTAGGAGACAGTAAACCACTGCTTGGACCAAAACATATGGGAGTTCTATCAGCACCTGTAACATCAAGTAGGATAATTCTTCACTGTCTGCTAAAGAATTTTTCATATGTTTAGATATAGAACGACATTGTTACCGTCCCGAATGCGTACGAAAACGCCGAGTACATTCCAGCCGCTCTTTCGCGATAAAATACGCTTCGTTCCACGGCAACCACTGGTTGCACATTGAAAGCATTTTGAACTCCCAGGAACAGAGTAGCAGTGTACATTGAACCCATAGCATTGAATAGATCTTGTTGCCTTTTCCTTTCATTAAGCAACTCATTAAGTATAGAGACTAAACCGTCACAACTTTAGCATACGATGCGTCAAAAACTTACCTTTTGGAACCGAGGTCCCAAAACATTGTTCCGAACATGAGCGCAATGACGATCGTAAAGAGTAATCTCACGGCCGAGTACGAGGGGTTACGCCAATTAGACCAATGTTGCTTCCATAAACAAGCTATGCATTGTGTGTAAAGTGATCTCGAGTATTTAGTTGGGAAATATAGGTCTTTCGAACCCGGCGTCGGGACACTCATTTCTTCGACTAGCATCATGTTCGTCCTGTTCAACATGTTTCAAAACGTCAATACCAAGTTATGCAATAGTGGTATCCAATATTGCTGGATTACCTATAAAGTTCAGAGCTTTTATACAAATCTGTGAAGTCAACCCCTAAAGCTAGTTCCTGAGCTGGGGAAGTGACTTCTAGCATCCATGTAGCAGGGTTGTATTGATCCTTTATTTTAGCAACTCCTTTGATTTCCTTATGAACAAAGATATAATGTTATAGAGCTTTGAATGGTTTTATTAAGACATTAATAATCCTACCTCAAAGTAGTTTATTAGATGAAAAGAATGGCGACCCAATGGACCAACGTATATTTCTTGGCCTCCTGGTTTCATCAAGAACAGCTGCAAGAAACAGCTCATACCTATAAGTTTCTTCGTTTTGCTATATACATTGATTCTTCTATGGTGTGTTACCTCGTCAAAAGCTTCGAAGATGTCGATGCTCGGTTGATGAATGGTGCACACGACAGTTCTTCCAGTATCGACTGTGTTTCGAACAGTTCGCATGACGATTGCTGCAGCTCTTGCATCGAGCCCTGAGGTTGGTTCATCCATGAATATTATGGATGGATTTGCTACAAGCTCCACTGCTATTGTGAGTCGCTTGCGCTGCTCGGACGACAGACCGTTTTCGCCTGGCAATCCAACTAGAGCATCCCTCAATGTCTTCAATTCCACAAGTTCCATCACTTCTTCAATGAACATCTGTTTTGTTCATAACAAGTTGCATACATTTGATTAACAACAGTTAAAAAAGTATGTAATAGTTTAAGTTCAACACCTTTCTAGTTTCGGAATCGATTTCACGAGGTAAACGGAGCCATGCCGAGTAGAGCAAGGATTCGTAGACGGTAACATGAGGAGAATGGATGTCGTTTTGTTCACAATAACCTGAGATTCTAGCAAATGTTTCTTGCTTCTTTGGATAACCAGATATTTTGATGCTTCCTTCAATGTAACCGCCTGTTTTTCTACCAGCCAAGACATCCATTAGTGTTGTCTTACCAGCACCACTCACTCCCATTAGAGCTGTTAAAACACCTGGCCTGAATGCTCCACTTATACCCTTCAGTAGCACCAATTTTTCTTCTACAATACCTTGATTTTTCATCTCCTGGAAAACCCCATTTCAGATCATTAGGATGAACATATTATAGGCTTAATATAGTCAATAAAGATACCCGCTAGTAGATATTGTCCATTTTAGCTTGTTACAAATGGTATCAGAGTCAGGCACAGAGCGGTGTGCTAGTTAGGATGTTGGGGCCTCAAGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTGTAAGGGTGTGAAAACTTTTCCCTGGCAGACGCATTTTAAAATCTTGAGGGAAAGCCCAGAAGGGAAAGCCCAAAAAGGACAATGTCCGCTAACGGTGGGTTTGGACTGTTACAAATGGTATTAGAGCCAGACACCATGCGGTATGCTAGCAAGGACGCTAGGCTCCCAAGGTGGGTGGATTGTGAGATCCCACATCAGTTTGAGAGGGGAACGAAAGATTCCTTGTAAGGGTGTAGAAACTTCTCCCTAGTAGACGCGTTTTAAAACCGTGAGATTAATGACGATATGTAACGGGCTAAAGCGGACAATATCTATTAGCGGTGGGCTTGGGCTTGGGCTTGGGCTGTTACACTAAATTACCTTGGGCATGTCAACAGAGTATGTGATATTTTTAAATGCGATTGAATGTTGCTCAAATGGAAGAATCATTCCTGTTCTCCTTTGGGCGTTGGCTTGTAAATCCATTTCAGTACTAGAAGCTGAGGCCCCTGAATTAGCAGGACGCCAAGCAATTGAGTATCAGCACAAAACTTCCTATTGAACTATTACAACATTATTAGTACCTCTTTTGTCAATGTCTTCTGGTTCCCCTGATTTAACAGCTTGACCCTTCCCAAATGCTGCAAAACCAATTCTAAGATGTTAATCTGAAGCTGTTAGATATACATTTTATAAAGCTGTCTAGAGGTCGAGATGGTTACGGTCGAGCAACGACAATGCGAGAGTGAACAAGAAGTTGAACAAAAAGGTATAGCCAAGCAAAGCTCCTACACCAATCCAATACCAATATGCATTTGGGAAGAATCCACGGGACTTCAAAACAATAAATCCTAA

mRNA sequence

ATGGAACGACATTGTTACCGTCCCGAATGCGTACGAAAACGCCGAGTACATTCCAGCCGCTCTTTCGCGATAAAATACGCTTCGTTCCACGGCAACCACTGGTTGCACATTGAAAGCATTTTGAACTCCCAGGAACAGAGTAGCAGTACATTAATAATCCTACCTCAAAGTAGTTTATTAGATGAAAAGAATGGCGACCCAATGGACCAACTTCGCATGACGATTGCTGCAGCTCTTGCATCGAGCCCTGAGGTTGGTTCATCCATGAATATTATGGATGGATTTGCTACAAGCTCCACTGCTATTGTGAGTCGCTTGCGCTGCTCGGACGACAGACCGTTTTCGCCTGGCAATCCAACTAGAGCATCCCTCAATTTTCGGAATCGATTTCACGAGGTAAACGGAGCCATGCCGAGTAGAGCAAGGATTCGTAGACGCTGTCTAGAGGTCGAGATGGTTACGGTCGAGCAACGACAATGCGAGAGTGAACAAGAAGTTGAACAAAAAGGTATAGCCAAGCAAAGCTCCTACACCAATCCAATACCAATATGCATTTGGGAAGAATCCACGGGACTTCAAAACAATAAATCCTAA

Coding sequence (CDS)

ATGGAACGACATTGTTACCGTCCCGAATGCGTACGAAAACGCCGAGTACATTCCAGCCGCTCTTTCGCGATAAAATACGCTTCGTTCCACGGCAACCACTGGTTGCACATTGAAAGCATTTTGAACTCCCAGGAACAGAGTAGCAGTACATTAATAATCCTACCTCAAAGTAGTTTATTAGATGAAAAGAATGGCGACCCAATGGACCAACTTCGCATGACGATTGCTGCAGCTCTTGCATCGAGCCCTGAGGTTGGTTCATCCATGAATATTATGGATGGATTTGCTACAAGCTCCACTGCTATTGTGAGTCGCTTGCGCTGCTCGGACGACAGACCGTTTTCGCCTGGCAATCCAACTAGAGCATCCCTCAATTTTCGGAATCGATTTCACGAGGTAAACGGAGCCATGCCGAGTAGAGCAAGGATTCGTAGACGCTGTCTAGAGGTCGAGATGGTTACGGTCGAGCAACGACAATGCGAGAGTGAACAAGAAGTTGAACAAAAAGGTATAGCCAAGCAAAGCTCCTACACCAATCCAATACCAATATGCATTTGGGAAGAATCCACGGGACTTCAAAACAATAAATCCTAA

Protein sequence

MERHCYRPECVRKRRVHSSRSFAIKYASFHGNHWLHIESILNSQEQSSSTLIILPQSSLLDEKNGDPMDQLRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRASLNFRNRFHEVNGAMPSRARIRRRCLEVEMVTVEQRQCESEQEVEQKGIAKQSSYTNPIPICIWEESTGLQNNKS

Homology

[Close]

BLAST of Cp4.1LG03g13900 vs. TrEMBL
Match: A0A0A9GSN4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 73  MTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRASLN 126
           +TIAAA AS PEVGSS+ +++G ATSSTAIVS LRCS DRPF+PG+PT A LN
Sbjct: 18  ITIAAARASRPEVGSSIKMIEGLATSSTAIVSLLRCSVDRPFTPGSPTSAPLN 70

[Close]

BLAST of Cp4.1LG03g13900 vs. TrEMBL
Match: A0A0A9C7A4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 73  MTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRASLNFRNRFHE 132
           MT+AAA ASSP+VGSSM +M+G ATSSTAIVS   CS D P +PGNPT AS   ++    
Sbjct: 18  MTMAAARASSPDVGSSMKMMEGLATSSTAIVSLFLCSVDNPLTPGNPTNASFKGKSSTSS 77

Query: 133 VNGAM 138
           +  ++
Sbjct: 78  ITSSI 82

[Close]

BLAST of Cp4.1LG03g13900 vs. TrEMBL
Match: A0A0A9MIU2_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 73  MTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRA 123
           MTIAAA AS P VGSS+NIM+G ATSSTAIVS  RCS DRP +PG PT A
Sbjct: 1   MTIAAARASKPVVGSSINIMEGLATSSTAIVSLFRCSADRPVAPGMPTMA 50

[Close]

BLAST of Cp4.1LG03g13900 vs. TrEMBL
Match: A0A0A9NJV1_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-09
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 73  MTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRASLNFRNRFHE 132
           MT+AAA ASSP+VGSSM +++G ATSSTAIVS   CS D P +PGNPT AS   ++    
Sbjct: 35  MTMAAARASSPDVGSSMKMIEGLATSSTAIVSLFLCSVDNPLTPGNPTNASFKGKSSTSS 94

Query: 133 VNGAM 138
           +  ++
Sbjct: 95  ITSSI 99

[Close]

BLAST of Cp4.1LG03g13900 vs. TrEMBL
Match: A0A0A9CPM7_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 73  MTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRASLN 126
           +TIAAA ASSPEVGSSM +M G ATSSTA+VS LRCS +RPF+P  PT A  N
Sbjct: 18  ITIAAARASSPEVGSSMKMMVGLATSSTAMVSLLRCSLERPFTPACPTSAPCN 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g13900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g13900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9GSN4_ARUDO	1.8e-10	71.70	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A9C7A4_ARUDO	2.6e-09	55.38	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A9MIU2_ARUDO	3.4e-09	74.00	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A9NJV1_ARUDO	7.7e-09	53.85	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A9CPM7_ARUDO	1.0e-08	69.81	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of Cp4.1LG03g13900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g13900 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g13900.1	Cp4.1LG03g13900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g13900	Cucurbita pepo (Zucchini)	cpecpeB334
Cp4.1LG03g13900	Cucurbita pepo (Zucchini)	cpecpeB451
Cp4.1LG03g13900	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g13900	Cucurbita maxima (Rimu)	cmacpeB493
Cp4.1LG03g13900	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g13900	Cucurbita moschata (Rifu)	cmocpeB452
Cp4.1LG03g13900	Bottle gourd (USVL1VR-Ls)	cpelsiB516
Cp4.1LG03g13900	Watermelon (Charleston Gray)	cpewcgB571
Cp4.1LG03g13900	Watermelon (97103) v1	cpewmB600
Cp4.1LG03g13900	Melon (DHL92) v3.5.1	cpemeB573
Cp4.1LG03g13900	Melon (DHL92) v3.6.1	cpemedB680
Cp4.1LG03g13900	Melon (DHL92) v3.6.1	cpemedB667
Cp4.1LG03g13900	Silver-seed gourd	carcpeB0176
Cp4.1LG03g13900	Silver-seed gourd	carcpeB0287
Cp4.1LG03g13900	Silver-seed gourd	carcpeB1054
Cp4.1LG03g13900	Cucumber (Chinese Long) v3	cpecucB0793
Cp4.1LG03g13900	Wax gourd	cpewgoB0771