Cp4.1LG03g13160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g13160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionarabinogalactan protein 23
LocationCp4.1LG03 : 9760744 .. 9760935 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAACATCGCCTGCGCTGCCCTCTTCGCCGCCGCTGCAGTCACTGCAGTTGTGGCCTCCGATGAGTCTCTCTCTCCCGCTGCCGCTCCTGGGCCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTTATCGGTGCGTCGCTTGTTTCCTTCGTCGCCTACGTATTGAACTGA

mRNA sequence

ATGGAAATGAAGAACATCGCCTGCGCTGCCCTCTTCGCCGCCGCTGCAGTCACTGCAGTTGTGGCCTCCGATGAGTCTCTCTCTCCCGCTGCCGCTCCTGGGCCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTTATCGGTGCGTCGCTTGTTTCCTTCGTCGCCTACGTATTGAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAACATCGCCTGCGCTGCCCTCTTCGCCGCCGCTGCAGTCACTGCAGTTGTGGCCTCCGATGAGTCTCTCTCTCCCGCTGCCGCTCCTGGGCCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTTATCGGTGCGTCGCTTGTTTCCTTCGTCGCCTACGTATTGAACTGA

Protein sequence

MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
Homology
[Close]
BLAST of Cp4.1LG03g13160 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-11
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A++E  +PA  PGP+SAASAALPALGSL+GASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPA--PGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 VLN 64
           L+
Sbjct: 61 YLH 61

[Close]
BLAST of Cp4.1LG03g13160 vs. TrEMBL
Match: A0A0A0L9U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-10
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IACA LFAAA VTAVVA+DE+L+P  APGPSS A   +PA+GSL+GASL+SF AY
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAP--APGPSSGAGIGVPAIGSLVGASLLSFAAY 60

Query: 61 VL 63
           L
Sbjct: 61 YL 60

[Close]
BLAST of Cp4.1LG03g13160 vs. TrEMBL
Match: A0A0A0K6L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428800 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-09
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESL----SPAAAPGPSSAASAALPALGSLIGASLVS 60
          MEMK IACAALFAAAA++A VA+DESL    SPAAAPGPSSAASAALP L    GAS+VS
Sbjct: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVL----GASVVS 60

Query: 61 FV-AYVLN 64
          FV AY LN
Sbjct: 61 FVAAYFLN 64

[Close]
BLAST of Cp4.1LG03g13160 vs. TrEMBL
Match: A0A078CAG3_BRANA (BnaC08g28710D protein OS=Brassica napus GN=BnaC08g28710D PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-09
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A +E+ +PA  PGP+SAASAALPALGSLIGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPA--PGPASAASAALPALGSLIGASLVSLFSY 60

Query: 61 VLN 64
           ++
Sbjct: 61 YMH 61

[Close]
BLAST of Cp4.1LG03g13160 vs. TrEMBL
Match: A0A0D3DU11_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-09
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A +E+ +PA  PGP+SAASAALPALGSLIGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPA--PGPASAASAALPALGSLIGASLVSLFSY 60

Query: 61 VLN 64
           ++
Sbjct: 61 YMH 61

[Close]
BLAST of Cp4.1LG03g13160 vs. TrEMBL
Match: A0A0D3CUE4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-08
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A +E+ +PA  PGP+SAAS ALPALGSL+GASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAIEEAGAPA--PGPASAASVALPALGSLVGASLVSLFSY 60

Query: 61 VLN 64
           L+
Sbjct: 61 YLH 61

[Close]
BLAST of Cp4.1LG03g13160 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-12
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A++E  +PA  PGP+SAASAALPALGSL+GASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPA--PGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 VLN 64
           L+
Sbjct: 61 YLH 61

[Close]
BLAST of Cp4.1LG03g13160 vs. TAIR10
Match: AT2G41905.1 (AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-09
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPS-SAASAALPALGSLIGASLVSFVA 60
          MEMK IAC  +FAAA++TAV+A++     A APGP+ S AS A+PALGSL+GASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YVLN 64
          Y LN
Sbjct: 61 YYLN 61

[Close]
BLAST of Cp4.1LG03g13160 vs. NCBI nr
Match: gi|659122692|ref|XP_008461276.1| (PREDICTED: arabinogalactan peptide 23-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-11
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFV-A 60
          MEMK IACAALFAAAAV+A VA+DES+SPAAAPGPSSAASAALP L    GAS+VSFV A
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 YVLN 64
          Y LN
Sbjct: 61 YFLN 60

[Close]
BLAST of Cp4.1LG03g13160 vs. NCBI nr
Match: gi|700203465|gb|KGN58598.1| (hypothetical protein Csa_3G697910 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-10
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IACA LFAAA VTAVVA+DE+L+P  APGPSS A   +PA+GSL+GASL+SF AY
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAP--APGPSSGAGIGVPAIGSLVGASLLSFAAY 60

Query: 61 VL 63
           L
Sbjct: 61 YL 60

[Close]
BLAST of Cp4.1LG03g13160 vs. NCBI nr
Match: gi|700189910|gb|KGN45143.1| (hypothetical protein Csa_7G428800 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-09
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESL----SPAAAPGPSSAASAALPALGSLIGASLVS 60
          MEMK IACAALFAAAA++A VA+DESL    SPAAAPGPSSAASAALP L    GAS+VS
Sbjct: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVL----GASVVS 60

Query: 61 FV-AYVLN 64
          FV AY LN
Sbjct: 61 FVAAYFLN 64

[Close]
BLAST of Cp4.1LG03g13160 vs. NCBI nr
Match: gi|15230372|ref|NP_191328.1| (arabinogalactan protein 23 [Arabidopsis thaliana])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A++E  +PA  PGP+SAASAALPALGSL+GASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPA--PGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 VLN 64
           L+
Sbjct: 61 YLH 61

[Close]
BLAST of Cp4.1LG03g13160 vs. NCBI nr
Match: gi|674961597|emb|CDX72003.1| (BnaC08g28710D [Brassica napus])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60
          MEMK IAC  LFAAA++TAV+A +E+ +PA  PGP+SAASAALPALGSLIGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAVEEAGAPA--PGPASAASAALPALGSLIGASLVSLFSY 60

Query: 61 VLN 64
           ++
Sbjct: 61 YMH 61

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g13160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP23_ARATH4.9e-1168.25Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2[more]
BLAST of Cp4.1LG03g13160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9U8_CUCSA3.8e-1070.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697910 PE=4 SV=1[more]
A0A0A0K6L5_CUCSA1.9e-0975.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428800 PE=4 SV=1[more]
A0A078CAG3_BRANA7.1e-0968.25BnaC08g28710D protein OS=Brassica napus GN=BnaC08g28710D PE=4 SV=1[more]
A0A0D3DU11_BRAOL7.1e-0968.25Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0D3CUE4_BRAOL1.6e-0866.67Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of Cp4.1LG03g13160 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57690.12.8e-1268.25 arabinogalactan protein 23[more]
AT2G41905.13.7e-0962.50 BEST Arabidopsis thaliana protein match is: arabinogalactan protein ... [more]
BLAST of Cp4.1LG03g13160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122692|ref|XP_008461276.1|6.4e-1179.69PREDICTED: arabinogalactan peptide 23-like [Cucumis melo][more]
gi|700203465|gb|KGN58598.1|5.4e-1070.97hypothetical protein Csa_3G697910 [Cucumis sativus][more]
gi|700189910|gb|KGN45143.1|2.7e-0975.00hypothetical protein Csa_7G428800 [Cucumis sativus][more]
gi|15230372|ref|NP_191328.1|7.8e-0968.25arabinogalactan protein 23 [Arabidopsis thaliana][more]
gi|674961597|emb|CDX72003.1|1.0e-0868.25BnaC08g28710D [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g13160.1Cp4.1LG03g13160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34672FAMILY NOT NAMEDcoord: 1..63
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g13160Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g13160Cucumber (Gy14) v1cgycpeB0197
Cp4.1LG03g13160Cucumber (Gy14) v1cgycpeB0914
Cp4.1LG03g13160Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g13160Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g13160Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g13160Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g13160Wild cucumber (PI 183967)cpecpiB617
Cp4.1LG03g13160Wild cucumber (PI 183967)cpecpiB629
Cp4.1LG03g13160Cucumber (Chinese Long) v2cpecuB615
Cp4.1LG03g13160Cucumber (Chinese Long) v2cpecuB626
Cp4.1LG03g13160Bottle gourd (USVL1VR-Ls)cpelsiB485
Cp4.1LG03g13160Bottle gourd (USVL1VR-Ls)cpelsiB516
Cp4.1LG03g13160Watermelon (Charleston Gray)cpewcgB564
Cp4.1LG03g13160Watermelon (Charleston Gray)cpewcgB571
Cp4.1LG03g13160Watermelon (97103) v1cpewmB600
Cp4.1LG03g13160Watermelon (97103) v1cpewmB624
Cp4.1LG03g13160Melon (DHL92) v3.5.1cpemeB557
Cp4.1LG03g13160Melon (DHL92) v3.5.1cpemeB588
Cp4.1LG03g13160Cucumber (Gy14) v2cgybcpeB552
Cp4.1LG03g13160Cucumber (Gy14) v2cgybcpeB831
Cp4.1LG03g13160Melon (DHL92) v3.6.1cpemedB661
Cp4.1LG03g13160Melon (DHL92) v3.6.1cpemedB698
Cp4.1LG03g13160Silver-seed gourdcarcpeB0025
Cp4.1LG03g13160Silver-seed gourdcarcpeB0176
Cp4.1LG03g13160Silver-seed gourdcarcpeB0973
Cp4.1LG03g13160Cucumber (Chinese Long) v3cpecucB0767
Cp4.1LG03g13160Cucumber (Chinese Long) v3cpecucB0784
Cp4.1LG03g13160Wax gourdcpewgoB0763
Cp4.1LG03g13160Wax gourdcpewgoB0775
Cp4.1LG03g13160Wax gourdcpewgoB0791