Cp4.1LG03g12540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g12540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Gem-associated 2
Location	Cp4.1LG03 : 10150567 .. 10152199 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTGCGGATCCAAGCAAAGGCTACATATATGTTAAACCCCGTTGGTTCATTCCTCAGTCGGTGGCGCTGCTAAACCCCTTGCCTTTCTTCAAGCAATGGCGGACGAGATAAGTTCTGACTATAGCGATGCCTTTAATCGGCACCCCCAGTCTCCTTTGATCGTCTTGAATCAAACGAGTTCTGCCTTCAAGATCTCTGCCGATGACAGGAAGCTCCCTTTGATCGTCTTGAATCAAAACCAGGAGTGTGAAATGATGAACAGTTGGAGTTCCGCTTCTGCCGAAGAGAATTCAGAAATTTCAGAATCTTTTGTCGAGAAGATGGTCATGTGCGATTCGGCTGCTTGTGCGTCTTCTGAAAACGGAGGAATCGTGAGAAATCAGGTGTGCAAGATTCGGAATCTTGATGTGGAACTCAGAAAAGAATCTCTCAAGGTTGACGCTGCACATGATTTTGAAACGTTCGGCGCCGTGGAAGGTGTTAATCAAGAAGTTGCGATTGATAGAGTAGAGGGGAAAGATTTTGCAAGAAGTGTAGTGAGTTTTGATGGAAATCAAGATTGTTTGAAGGAAGAACTTGCTCAAGAAGTTCGATCGATCGAGAAGTTGCTGGATAAAGAAATCGATTCTCAGAGCATCTTGGAAAAGAAAAAGAAATTACAATCGGAAGAAGATGAAATTCATGTAGAGAAGGGAAAGAATCCCTCTAGCTTAAGAGGGATCGTGGATCAGAAGATTGCGGATCAGCAAAATGATTCTAAACACATGAATTTTCTGAGACGAAGTCATTTATCTCTCAGAAATTCATTGAAGATCGAAGTAATAGACGAGACTGCATTAGTTGAACCAGTTCATGTTTCCAAGATTGGAAACGGAGAAGGGATTGGTATTGTTTGTCCAACAAGGCCAATGCAGATCAAACTGGACAAATCCCACGAACCTGACAGAGGAGGGAAAAAGGCTAAAAGATCGAGGAGGAGGGCAAGGGAAGCCAAGGTTTGTGAGATGCATTGGAGCCTGGGGAATGTGAATGAACATCAAAAGAATGTGGAAGGAAACAAGATAGTGTATTCCATAAAGGACATGGAAGCACTGAGGTTTGTGAATGTTGCAGAACAGAGGAGACTGTGGAAAGCTATATGTAAGGAACTTCTGCCCATCGTGGCAAGGGAATACAGTAGCTTAACAAGCTCGAATTACCCTATGAAGATAGGCTCCACCTCTGATCCTAGGCAGCATTTGGTGAAGAGAGAAGAAGCCCCTTCGATTATGAGTAAGTATTTCTGTTTATGAATGAATGATGGGTCTATAACTGAGTTGCTTATGAAGTTTGGTATTGAATTGCCTCTCTGATAAATATGAAGTTTGTCTATGAATGGTTGCTTAGGGTTCTTTAGATTTTGAGTTGAAGATTCTGAGCACCAACTTGTTCATATTTGTTCCTTGAAAACGAATGCTCTTGATAATTTGTTGTCATGGGTTTATGGTTTTGATTGTGTCATTTTGATGGTTTGAATTTGTCTTGTGCACAGGTGTTGTTGCTGCAAGGGGAAGATGGAATCATATGAATATTTTTGTGCATTGAAGAAGGGACTAAATCAATGCAACTGAAGACATTTTGTGCATCAAAAT

mRNA sequence

GTATTGCGGATCCAAGCAAAGGCTACATATATGTTAAACCCCGTTGGTTCATTCCTCAGTCGGTGGCGCTGCTAAACCCCTTGCCTTTCTTCAAGCAATGGCGGACGAGATAAGTTCTGACTATAGCGATGCCTTTAATCGGCACCCCCAGTCTCCTTTGATCGTCTTGAATCAAACGAGTTCTGCCTTCAAGATCTCTGCCGATGACAGGAAGCTCCCTTTGATCGTCTTGAATCAAAACCAGGAGTGTGAAATGATGAACAGTTGGAGTTCCGCTTCTGCCGAAGAGAATTCAGAAATTTCAGAATCTTTTGTCGAGAAGATGGTCATGTGCGATTCGGCTGCTTGTGCGTCTTCTGAAAACGGAGGAATCGTGAGAAATCAGGTGTGCAAGATTCGGAATCTTGATGTGGAACTCAGAAAAGAATCTCTCAAGGTTGACGCTGCACATGATTTTGAAACGTTCGGCGCCGTGGAAGGTGTTAATCAAGAAGTTGCGATTGATAGAGTAGAGGGGAAAGATTTTGCAAGAAGTGTAGTGAGTTTTGATGGAAATCAAGATTGTTTGAAGGAAGAACTTGCTCAAGAAGTTCGATCGATCGAGAAGTTGCTGGATAAAGAAATCGATTCTCAGAGCATCTTGGAAAAGAAAAAGAAATTACAATCGGAAGAAGATGAAATTCATGTAGAGAAGGGAAAGAATCCCTCTAGCTTAAGAGGGATCGTGGATCAGAAGATTGCGGATCAGCAAAATGATTCTAAACACATGAATTTTCTGAGACGAAGTCATTTATCTCTCAGAAATTCATTGAAGATCGAAGTAATAGACGAGACTGCATTAGTTGAACCAGTTCATGTTTCCAAGATTGGAAACGGAGAAGGGATTGGTATTGTTTGTCCAACAAGGCCAATGCAGATCAAACTGGACAAATCCCACGAACCTGACAGAGGAGGGAAAAAGGCTAAAAGATCGAGGAGGAGGGCAAGGGAAGCCAAGGTTTGTGAGATGCATTGGAGCCTGGGGAATGTGAATGAACATCAAAAGAATGTGGAAGGAAACAAGATAGTGTATTCCATAAAGGACATGGAAGCACTGAGGTTTGTGAATGTTGCAGAACAGAGGAGACTGTGGAAAGCTATATGTAAGGAACTTCTGCCCATCGTGGCAAGGGAATACAGTAGCTTAACAAGCTCGAATTACCCTATGAAGATAGGCTCCACCTCTGATCCTAGGCAGCATTTGGTGAAGAGAGAAGAAGCCCCTTCGATTATGAGTGTTGTTGCTGCAAGGGGAAGATGGAATCATATGAATATTTTTGTGCATTGAAGAAGGGACTAAATCAATGCAACTGAAGACATTTTGTGCATCAAAAT

Coding sequence (CDS)

ATGGCGGACGAGATAAGTTCTGACTATAGCGATGCCTTTAATCGGCACCCCCAGTCTCCTTTGATCGTCTTGAATCAAACGAGTTCTGCCTTCAAGATCTCTGCCGATGACAGGAAGCTCCCTTTGATCGTCTTGAATCAAAACCAGGAGTGTGAAATGATGAACAGTTGGAGTTCCGCTTCTGCCGAAGAGAATTCAGAAATTTCAGAATCTTTTGTCGAGAAGATGGTCATGTGCGATTCGGCTGCTTGTGCGTCTTCTGAAAACGGAGGAATCGTGAGAAATCAGGTGTGCAAGATTCGGAATCTTGATGTGGAACTCAGAAAAGAATCTCTCAAGGTTGACGCTGCACATGATTTTGAAACGTTCGGCGCCGTGGAAGGTGTTAATCAAGAAGTTGCGATTGATAGAGTAGAGGGGAAAGATTTTGCAAGAAGTGTAGTGAGTTTTGATGGAAATCAAGATTGTTTGAAGGAAGAACTTGCTCAAGAAGTTCGATCGATCGAGAAGTTGCTGGATAAAGAAATCGATTCTCAGAGCATCTTGGAAAAGAAAAAGAAATTACAATCGGAAGAAGATGAAATTCATGTAGAGAAGGGAAAGAATCCCTCTAGCTTAAGAGGGATCGTGGATCAGAAGATTGCGGATCAGCAAAATGATTCTAAACACATGAATTTTCTGAGACGAAGTCATTTATCTCTCAGAAATTCATTGAAGATCGAAGTAATAGACGAGACTGCATTAGTTGAACCAGTTCATGTTTCCAAGATTGGAAACGGAGAAGGGATTGGTATTGTTTGTCCAACAAGGCCAATGCAGATCAAACTGGACAAATCCCACGAACCTGACAGAGGAGGGAAAAAGGCTAAAAGATCGAGGAGGAGGGCAAGGGAAGCCAAGGTTTGTGAGATGCATTGGAGCCTGGGGAATGTGAATGAACATCAAAAGAATGTGGAAGGAAACAAGATAGTGTATTCCATAAAGGACATGGAAGCACTGAGGTTTGTGAATGTTGCAGAACAGAGGAGACTGTGGAAAGCTATATGTAAGGAACTTCTGCCCATCGTGGCAAGGGAATACAGTAGCTTAACAAGCTCGAATTACCCTATGAAGATAGGCTCCACCTCTGATCCTAGGCAGCATTTGGTGAAGAGAGAAGAAGCCCCTTCGATTATGAGTGTTGTTGCTGCAAGGGGAAGATGGAATCATATGAATATTTTTGTGCATTGA

Protein sequence

MADEISSDYSDAFNRHPQSPLIVLNQTSSAFKISADDRKLPLIVLNQNQECEMMNSWSSASAEENSEISESFVEKMVMCDSAACASSENGGIVRNQVCKIRNLDVELRKESLKVDAAHDFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVRSIEKLLDKEIDSQSILEKKKKLQSEEDEIHVEKGKNPSSLRGIVDQKIADQQNDSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGIVCPTRPMQIKLDKSHEPDRGGKKAKRSRRRAREAKVCEMHWSLGNVNEHQKNVEGNKIVYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMKIGSTSDPRQHLVKREEAPSIMSVVAARGRWNHMNIFVH

Homology

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BLAST of Cp4.1LG03g12540 vs. TrEMBL
Match: A0A0A0KXG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G016410 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 1.9e-126
Identity = 274/433 (63.28%), Postives = 320/433 (73.90%), Query Frame = 1


Query: 1   MADEISSDYSDAFN------RHPQSPLIVLNQTSSAFKISADDRKLPLIVLNQNQECEMM 60
           MADEISSDY+D FN        PQSP  +++   SA +ISAD    PLIV NQN + E++
Sbjct: 1   MADEISSDYADGFNPKFLSSEKPQSPSRLVD---SALQISADHHNFPLIVSNQNPDSEVI 60

Query: 61  NSWSSASAEENSEISESFVEKMVMCDSAACASSENGGIVRNQVC-KIRNLDVELRKESLK 120
           NS +SASA+E+ E S   V+KMV+CDSA C SSENGG + + V  KI+NLD+EL KE LK
Sbjct: 61  NSVTSASAQEDPETS---VDKMVLCDSA-CGSSENGGNMGSLVVGKIQNLDLELGKEPLK 120

Query: 121 VDAAHDFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVR------- 180
           VDA HDF T    E   Q+VA+D V+ KDFARSV+S DGNQDC KEEL +E +       
Sbjct: 121 VDAVHDFGTLDTGEDGKQDVAVDEVDVKDFARSVLSLDGNQDCAKEELVREGQLAADKEA 180

Query: 181 --SIEKLLDKEIDSQSILEKKKKLQSEE--------DEIHVEKGKNPSSLRGIVD----- 240
               EKLL KE DS+SILE KKKL  E+        DEIH+++G NP S  GIVD     
Sbjct: 181 FARTEKLLKKETDSESILEMKKKLLLEKIDAMLVPGDEIHLQEGDNPPSSGGIVDGCKKT 240

Query: 241 -----QKIADQQN-DSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGI 300
                +KIADQQN DS+ MN LRRSHLSLRNSLKIEVIDETALVEPVHVS+IGNGEGIGI
Sbjct: 241 MLMGEEKIADQQNNDSETMNVLRRSHLSLRNSLKIEVIDETALVEPVHVSRIGNGEGIGI 300

Query: 301 VCPTRPMQIKLDKSHEPDRGGKKAKRSRRRAREAKVCEMHWSLGNVNE------HQKNVE 360
           VCPTR MQ+K++KSHEPD+GGKKAK+SRR+ARE K+ EMHW++GN+NE       Q+N E
Sbjct: 301 VCPTRSMQMKVNKSHEPDKGGKKAKKSRRKAREGKLSEMHWNMGNLNEVDKVNGRQENAE 360

Query: 361 GNKIVYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMKIGSTSDPR 393
           GNKIVYS KDMEALRFVNVAEQ+RLWKAICKELLP+VAREYSSLT     +K GSTSDPR
Sbjct: 361 GNKIVYSRKDMEALRFVNVAEQKRLWKAICKELLPVVAREYSSLT-----IKTGSTSDPR 420

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BLAST of Cp4.1LG03g12540 vs. TrEMBL
Match: A0A067L365_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23794 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 109/378 (28.84%), Postives = 179/378 (47.35%), Query Frame = 1


Query: 34  SADDRKLPLIVLNQNQECEMMNSWSSASAEENSEISESF-VEKMVMCDSAACASSENGGI 93
           S+    +P +  ++  +C       S S+EEN  I  S   EK+++CD  +  S  + G 
Sbjct: 52  SSTKEDIPSLSSSKKVKCSFTEP--SGSSEENQGILGSDGEEKVILCDLVS-GSLGSEGK 111

Query: 94  VRNQVCKIRNLDVELRKESLKVDAAHDFETFGA---VEGVNQEVAIDRVEGKDFARSVVS 153
             + V KI + DVEL+ E+   +   D +       +EG  ++V  ++ +     +S + 
Sbjct: 112 SEDFVRKIESFDVELQ-ETKNCEMGFDTDVKNRQENIEGTVKDVVGEKEKELVCVKSEMG 171

Query: 154 FDGNQDCLKEELAQEVRSIEKLLDKEIDSQSILE-KKKKLQSEEDEIHVEKGKNPSSLRG 213
           F   +   K  +A  + S   + +K+ + QS+LE KKK+L ++ +   + K K    L G
Sbjct: 172 FSVAEKFDKHGVA--IGSF--IEEKKEEEQSLLEAKKKQLLTKIETGSIFKDKILGGLEG 231

Query: 214 IVDQKIADQQNDSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGIVCP 273
           I +                      +R SLK++VID+TA++E V + K GNGE       
Sbjct: 232 IDEP---------------------IRRSLKVKVIDDTAVLEAVPIPKTGNGEN-----K 291

Query: 274 TRPMQIKLDKSHEPDRGGKKAKR-SRRRAREAKVCEMHWSLGNV-------NEHQKNVEG 333
            +  ++   K   P R GK  K  S    ++ K  ++  ++  +       NE QKN  G
Sbjct: 292 KQKQEVDGKKLKLPRRKGKDVKNVSETSEKQKKTTQVGKAVNKLSLVGEAQNESQKN--G 351

Query: 334 NKI-VYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMKIGSTSDPR 393
           + +  YS ++MEALRFVNV EQR+LW+     L   V +EY  L  S +   I    DPR
Sbjct: 352 HPLRKYSREEMEALRFVNVVEQRKLWRDTYTGLGDAVVKEYDDLAGSRHHKNIHLNFDPR 393

Query: 394 QHLVKREEAPSIMSVVAA 398
           QH  K+E+A   +  V++
Sbjct: 412 QHYGKKEDARRTLREVSS 393

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BLAST of Cp4.1LG03g12540 vs. TrEMBL
Match: A0A061EJX6_THECC (Spliceosome protein-related, putative OS=Theobroma cacao GN=TCM_020105 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 93/338 (27.51%), Postives = 161/338 (47.63%), Query Frame = 1


Query: 63  EENSEISESFVEKMVMCDSAACASSENGGIVRNQVCKIRNLDVELRKESLKVDAAHDFET 122
           +E + + +S  +K + C S     ++  G+  +      N+ +    E  + D     E 
Sbjct: 49  QEETALDDSSPKKKLKCSSLLSEVNQELGLQSST----ENVSLSGSFEKEQKDNVRSKEG 108

Query: 123 FGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVRSIEKLLDKEIDSQSIL 182
           F  V+ V+ +V    V+G     +    +    CL+ E   E R+I+    K +DS+++L
Sbjct: 109 FFGVQEVDTQVNAIEVDGGSVLEASKK-EHLGTCLEFE---EKRAIK---GKALDSENVL 168

Query: 183 EKKKKLQSEEDEIHVEKGKNPSSLRGIVDQKIADQQNDSKHMNFLRRSHLSLRNSLKIEV 242
           E +KK    E E+    G    +         + + +D K ++ ++   L +R+SLK+EV
Sbjct: 169 EAEKKRLLGELELGNIFGAKTCTGHTFGSATDSSKIDDGKKIDGIKGLDLPIRSSLKVEV 228

Query: 243 IDETALVEPVHVSKIGNGEGIGIVCPTRPMQIKLDKSHEPDRGGKKAKRSRRRAREAKVC 302
           ID+TAL+E   +SK GNG           ++ +  K    +  GKKAKRSRR+ + AK  
Sbjct: 229 IDDTALIESFPLSKTGNGS----------VKDEKKKKGNQEIDGKKAKRSRRKGKNAKKV 288

Query: 303 ----EMHWSLGNV----NEHQKNVEGNKIVYSIKDMEALRFVNVAEQRRLWKAICKELLP 362
               E +  L  +    N  +++   +K +YS +D+EALRF  V EQR++W  +   L  
Sbjct: 289 LGEDERNMELTKIVVVQNGRKESNTQSKRMYSREDLEALRFAKVVEQRKIWLDMYNGLGA 348

Query: 363 IVAREYSSLTSSNYPMKIGSTSDPRQHLVKREEAPSIM 393
            V +EY  L    +   I  ++D R    ++ E+P+IM
Sbjct: 349 AVIKEYEDLAIWKHQKNISLSADTRHCFGRKAESPAIM 365

[Close]

BLAST of Cp4.1LG03g12540 vs. TrEMBL
Match: A0A067DEC1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036273mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 77/263 (29.28%), Postives = 133/263 (50.57%), Query Frame = 1


Query: 136 DRVEGKDFARSVVSFDGNQDCLKEELAQEVRSIEKLLDKEIDSQSILEKKKKLQS--EED 195
           ++V+ KD  ++ V   G Q+ + E  ++E  + E     E +   +L +  +L +  E +
Sbjct: 3   EKVQEKDCVKAEVGSSGIQESIVEGDSKESLATECETHLEAEKNRLLAQLNELGAVFEGN 62

Query: 196 EIHVEKGKNPSSLRGIVDQKIADQQNDSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVH 255
           + HV+                 +  ND + ++ ++     +   +KI+VID+TAL+E V 
Sbjct: 63  KTHVD-----------------NVLNDGETVDGIKVLDGDVGRPVKIQVIDDTALIESVR 122

Query: 256 VSKIGNG--EGIGIVCPTRPMQIKLDKSHEPDRGGKKAKRSRRRAREAKVCEMHWSLGNV 315
           V +IGNG  +  GI+  T  M  + +K  + D  GKKAKRSRR+ ++ K+  +   L   
Sbjct: 123 VPRIGNGCLKDRGIIAGTAKMLQRNEKKQQVD--GKKAKRSRRKGKDTKMVSVSARLVQD 182

Query: 316 NEHQ--KNVEGNKIVYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYP 375
            +     N +  +I+YS ++MEAL+F NV +QR+LW+ +   L P V  EY +L  S + 
Sbjct: 183 EKDSGLNNRKEAEIMYSREEMEALKFFNVVQQRKLWRNVYTGLGPAVMNEYDNLACSKHQ 242

Query: 376 MKIGSTSDPRQHLVKREEAPSIM 393
                +SD R   +    AP I+
Sbjct: 243 KPTLKSSDTRTCFLSESAAPGIL 246

[Close]

BLAST of Cp4.1LG03g12540 vs. TrEMBL
Match: B9SX33_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1267370 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.9e-16
Identity = 106/364 (29.12%), Postives = 172/364 (47.25%), Query Frame = 1


Query: 62  AEENSEISESF-VEKMVMC--DSAACASSENGGIVRNQVCKIRNLDVELRKESLKVDAAH 121
           +E+N EI  S   EK ++C  DS + A + N         K+ NLD +L++    V    
Sbjct: 135 SEQNQEILGSCGQEKALLCYLDSGSFACNVNS---EGSSSKVGNLDDQLQETKNFVFVGE 194

Query: 122 DFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVRSIEKLLDKEIDS 181
           D    G +E  N  V            + V F G ++  K  + +E +++E  +   I+ 
Sbjct: 195 D--NHGEIEETNNGV-----------NNEVGFSGIEESDKPGVLKECKTVENEISFVIEE 254

Query: 182 --QSILE-KKKKLQSE-------EDEIHVEKGKNPSSLRGIVDQKIADQQNDSKHMNFLR 241
             +++LE KKK+L ++       +D+IHVE      +  GI              +  L+
Sbjct: 255 KKETLLEAKKKQLLAKVEAGSVFKDKIHVENSLGFDATAGI--------------LGGLK 314

Query: 242 RSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGIVCPTRPMQIKLDKSHEPDRGGKK 301
             + S++ SLK+EVID+TA++  V V+K GN             +  L K+ + +  GKK
Sbjct: 315 GLNESVKKSLKVEVIDDTAVIGTVVVAKTGNDGA-------NNAERNLKKNGKQEADGKK 374

Query: 302 AKRSRRRAREAK-----------VCEMHWSLGNV-------NEHQKNVEGNKI-VYSIKD 361
           AKR RR+ ++ K           + +    + N        N  QKN  G++I  YS ++
Sbjct: 375 AKRPRRKGKDVKKGLVINGGQKKMAQAEKDMINTIQIGQYHNGDQKN--GDQIRKYSREE 434

Query: 362 MEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMK-IGSTSDPRQHLVKREEA 393
           MEALRFVN+ +QR+LW+ I   L   V +EY  L SS +  K      DPR+ + ++E+A
Sbjct: 435 MEALRFVNIVQQRKLWRVIYTGLEDAVIKEYDDLASSRHHQKNFHLDFDPRKRVGRKEDA 459

[Close]

BLAST of Cp4.1LG03g12540 vs. NCBI nr
Match: gi|659108967|ref|XP_008454478.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494875 [Cucumis melo])

HSP 1 Score: 463.8 bits (1192), Expect = 3.2e-127
Identity = 273/432 (63.19%), Postives = 316/432 (73.15%), Query Frame = 1


Query: 1   MADEISSDYSDAFN------RHPQSPLIVLNQTSSAFKISADDRKLPLIVLNQNQECEMM 60
           MADEI+SDY+D FN       +PQSP        SA  ISAD    PLIV N+N +CE++
Sbjct: 1   MADEINSDYADGFNPKFLSSENPQSPC---RPVDSALGISADYHNFPLIVSNRNLDCEVI 60

Query: 61  NSWSSASAEENSEISESFVEKMVMCDSAACASSENGGIVRNQVC-KIRNLDVELRKESLK 120
           N+ +SAS +EN E S   V+KMV+CDSA C SSENGG + + V  KI+NLDVEL KESLK
Sbjct: 61  NTVTSASPQENPESS---VDKMVLCDSA-CGSSENGGSMGSLVVGKIQNLDVELGKESLK 120

Query: 121 VDAAHDFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVR------- 180
           VDA HDFET    E   QEVA+D V+ KDFARSV+SFDGNQDC KEEL QE +       
Sbjct: 121 VDAVHDFETLDIGEDEKQEVAVDEVDVKDFARSVLSFDGNQDCAKEELVQEGQLAADKEA 180

Query: 181 --SIEKLLDKEIDSQSILEKKKKLQSEE--------DEIHVEKGKNPSSLRGIVD----- 240
               EKLL KE DS+SILE KKKL  E+        DEIH+++G NP S  GIVD     
Sbjct: 181 FARTEKLLKKETDSESILEMKKKLLLEKIDAMLVPGDEIHLQEGDNPPSSGGIVDGCKKT 240

Query: 241 -----QKIADQQNDSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGIV 300
                +KIADQQNDS+ MN LRRSHLSLRNSLKIEVIDETALVEPVHVS+IGNG+GIGIV
Sbjct: 241 MLMDEEKIADQQNDSETMNVLRRSHLSLRNSLKIEVIDETALVEPVHVSRIGNGDGIGIV 300

Query: 301 CPTRPMQIKLDKSHEPDRGGKKAKRSRRRAREAKVCEMHWSLGNVNE------HQKNVEG 360
           CPTR MQ+++ KSHEPD+GGKK  +SRR+ARE K+ EMHW++ NVNE       Q+N EG
Sbjct: 301 CPTRSMQMRVIKSHEPDKGGKKGXKSRRKAREGKLSEMHWNMWNVNEVDKVDGRQENAEG 360

Query: 361 NKIVYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMKIGSTSDPRQ 393
           NKI+YS KDMEALRFVNVAEQ+RLWKAICKELLP+VAREYSSLT     +K GSTSDPRQ
Sbjct: 361 NKIMYSRKDMEALRFVNVAEQKRLWKAICKELLPVVAREYSSLT-----IKTGSTSDPRQ 420

[Close]

BLAST of Cp4.1LG03g12540 vs. NCBI nr
Match: gi|449469156|ref|XP_004152287.1| (PREDICTED: uncharacterized protein LOC101215637 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 2.7e-126
Identity = 274/433 (63.28%), Postives = 320/433 (73.90%), Query Frame = 1


Query: 1   MADEISSDYSDAFN------RHPQSPLIVLNQTSSAFKISADDRKLPLIVLNQNQECEMM 60
           MADEISSDY+D FN        PQSP  +++   SA +ISAD    PLIV NQN + E++
Sbjct: 1   MADEISSDYADGFNPKFLSSEKPQSPSRLVD---SALQISADHHNFPLIVSNQNPDSEVI 60

Query: 61  NSWSSASAEENSEISESFVEKMVMCDSAACASSENGGIVRNQVC-KIRNLDVELRKESLK 120
           NS +SASA+E+ E S   V+KMV+CDSA C SSENGG + + V  KI+NLD+EL KE LK
Sbjct: 61  NSVTSASAQEDPETS---VDKMVLCDSA-CGSSENGGNMGSLVVGKIQNLDLELGKEPLK 120

Query: 121 VDAAHDFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVR------- 180
           VDA HDF T    E   Q+VA+D V+ KDFARSV+S DGNQDC KEEL +E +       
Sbjct: 121 VDAVHDFGTLDTGEDGKQDVAVDEVDVKDFARSVLSLDGNQDCAKEELVREGQLAADKEA 180

Query: 181 --SIEKLLDKEIDSQSILEKKKKLQSEE--------DEIHVEKGKNPSSLRGIVD----- 240
               EKLL KE DS+SILE KKKL  E+        DEIH+++G NP S  GIVD     
Sbjct: 181 FARTEKLLKKETDSESILEMKKKLLLEKIDAMLVPGDEIHLQEGDNPPSSGGIVDGCKKT 240

Query: 241 -----QKIADQQN-DSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGI 300
                +KIADQQN DS+ MN LRRSHLSLRNSLKIEVIDETALVEPVHVS+IGNGEGIGI
Sbjct: 241 MLMGEEKIADQQNNDSETMNVLRRSHLSLRNSLKIEVIDETALVEPVHVSRIGNGEGIGI 300

Query: 301 VCPTRPMQIKLDKSHEPDRGGKKAKRSRRRAREAKVCEMHWSLGNVNE------HQKNVE 360
           VCPTR MQ+K++KSHEPD+GGKKAK+SRR+ARE K+ EMHW++GN+NE       Q+N E
Sbjct: 301 VCPTRSMQMKVNKSHEPDKGGKKAKKSRRKAREGKLSEMHWNMGNLNEVDKVNGRQENAE 360

Query: 361 GNKIVYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMKIGSTSDPR 393
           GNKIVYS KDMEALRFVNVAEQ+RLWKAICKELLP+VAREYSSLT     +K GSTSDPR
Sbjct: 361 GNKIVYSRKDMEALRFVNVAEQKRLWKAICKELLPVVAREYSSLT-----IKTGSTSDPR 420

[Close]

BLAST of Cp4.1LG03g12540 vs. NCBI nr
Match: gi|645231962|ref|XP_008222643.1| (PREDICTED: uncharacterized protein LOC103322496 [Prunus mume])

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 117/399 (29.32%), Postives = 182/399 (45.61%), Query Frame = 1


Query: 46  NQNQECEMMNSWSSASAEENSEISESFVEKMVMCDSAACASSENGGI---------VRNQ 105
           +++  C + +S          ++SE+ +E++    +     +E  G+         V   
Sbjct: 139 DKSPPCSVSDSSKKVKLSPYGQVSETHLEEIQEMRNYVSGKAEACGLISGLTVSDGVAQD 198

Query: 106 VCKIRNLDVELRKESLKVDAAHDFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDC 165
             +I  + +    E +K       ET    +   + V  D V+ K    SV+S  G  D 
Sbjct: 199 FMEICEMGLVSNSEFVKT------ETEQTPDDEKERVVSDLVDKKGEG-SVISELGFADI 258

Query: 166 LKEELAQEVRSIEKL--------------------LDKEIDSQSILEKKKKLQSEEDE-- 225
             E+L QE +S+ +L                    + KE +SQS LE KKK   EE E  
Sbjct: 259 --EKLMQETKSVTELDCKEGVDASLSTSVENRVVFVGKEAESQSSLELKKKQLLEEVEAI 318

Query: 226 -IHVEKGKNPSSLRGIVDQKIADQQNDSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVH 285
            +  EK    S   G +                         +S KIEVID+TA++    
Sbjct: 319 LVPAEKTLVQSGTDGSL-------------------------SSFKIEVIDDTAMI---- 378

Query: 286 VSKIGNGEG--IGIVCPTRPM-QIKLDKSHEPDRGGKKAKRSRRRAREAKVCEMHWSLGN 345
            S +GNG G  +G + P + + Q   +K+ + +  GKK  ++R   R+ KV        +
Sbjct: 379 -SLLGNGCGKELGFLGPAKCVAQGNGNKNAKKEMNGKK--KARTSGRKKKVANHLVEAHS 438

Query: 346 VNEHQKNVEGNKIVYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPM 405
           V+   K  +G KI YS  ++EA+R+VNV EQ++LWK I + L P+VA+EY +L S  +  
Sbjct: 439 VS--LKKGKGAKIFYSRMELEAMRYVNVVEQKKLWKDIYRGLGPVVAKEYENLASVKHQK 494

Query: 406 KIGSTSDPRQHLVKREEAPSIMSVVAARGRWNHMNIFVH 410
            I +  +P +   K E  P I+ VVA+RGRWN MNIFVH
Sbjct: 499 NIHNNFEPHKRFEKMEVPPGILGVVASRGRWNQMNIFVH 494

[Close]

BLAST of Cp4.1LG03g12540 vs. NCBI nr
Match: gi|1000944187|ref|XP_015581697.1| (PREDICTED: uncharacterized protein LOC8269748 [Ricinus communis])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 108/370 (29.19%), Postives = 174/370 (47.03%), Query Frame = 1


Query: 62  AEENSEISESF-VEKMVMC--DSAACASSENGGIVRNQVCKIRNLDVELRKESLKVDAAH 121
           +E+N EI  S   EK ++C  DS + A + N         K+ NLD +L++    V    
Sbjct: 135 SEQNQEILGSCGQEKALLCYLDSGSFACNVNS---EGSSSKVGNLDDQLQETKNFVFVGE 194

Query: 122 DFETFGAVEGVNQEVAIDRVEGKDFARSVVSFDGNQDCLKEELAQEVRSIEKLLDKEIDS 181
           D    G +E  N  V            + V F G ++  K  + +E +++E  +   I+ 
Sbjct: 195 D--NHGEIEETNNGV-----------NNEVGFSGIEESDKPGVLKECKTVENEISFVIEE 254

Query: 182 --QSILE-KKKKLQSE-------EDEIHVEKGKNPSSLRGIVDQKIADQQNDSKHMNFLR 241
             +++LE KKK+L ++       +D+IHVE      +  GI              +  L+
Sbjct: 255 KKETLLEAKKKQLLAKVEAGSVFKDKIHVENSLGFDATAGI--------------LGGLK 314

Query: 242 RSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGIVCPTRPMQIKLDKSHEPDRGGKK 301
             + S++ SLK+EVID+TA++  V V+K GN             +  L K+ + +  GKK
Sbjct: 315 GLNESVKKSLKVEVIDDTAVIGTVVVAKTGNDGA-------NNAERNLKKNGKQEADGKK 374

Query: 302 AKRSRRRAREAK-----------VCEMHWSLGNV-------NEHQKNVEGNKI-VYSIKD 361
           AKR RR+ ++ K           + +    + N        N  QKN  G++I  YS ++
Sbjct: 375 AKRPRRKGKDVKKGLVINGGQKKMAQAEKDMINTIQIGQYHNGDQKN--GDQIRKYSREE 434

Query: 362 MEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMK-IGSTSDPRQHLVKREEA 399
           MEALRFVN+ +QR+LW+ I   L   V +EY  L SS +  K      DPR+ + ++E+A
Sbjct: 435 MEALRFVNIVQQRKLWRVIYTGLEDAVIKEYDDLASSRHHQKNFHLDFDPRKRVGRKEDA 465

[Close]

BLAST of Cp4.1LG03g12540 vs. NCBI nr
Match: gi|643736562|gb|KDP42852.1| (hypothetical protein JCGZ_23794 [Jatropha curcas])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 109/378 (28.84%), Postives = 179/378 (47.35%), Query Frame = 1


Query: 34  SADDRKLPLIVLNQNQECEMMNSWSSASAEENSEISESF-VEKMVMCDSAACASSENGGI 93
           S+    +P +  ++  +C       S S+EEN  I  S   EK+++CD  +  S  + G 
Sbjct: 52  SSTKEDIPSLSSSKKVKCSFTEP--SGSSEENQGILGSDGEEKVILCDLVS-GSLGSEGK 111

Query: 94  VRNQVCKIRNLDVELRKESLKVDAAHDFETFGA---VEGVNQEVAIDRVEGKDFARSVVS 153
             + V KI + DVEL+ E+   +   D +       +EG  ++V  ++ +     +S + 
Sbjct: 112 SEDFVRKIESFDVELQ-ETKNCEMGFDTDVKNRQENIEGTVKDVVGEKEKELVCVKSEMG 171

Query: 154 FDGNQDCLKEELAQEVRSIEKLLDKEIDSQSILE-KKKKLQSEEDEIHVEKGKNPSSLRG 213
           F   +   K  +A  + S   + +K+ + QS+LE KKK+L ++ +   + K K    L G
Sbjct: 172 FSVAEKFDKHGVA--IGSF--IEEKKEEEQSLLEAKKKQLLTKIETGSIFKDKILGGLEG 231

Query: 214 IVDQKIADQQNDSKHMNFLRRSHLSLRNSLKIEVIDETALVEPVHVSKIGNGEGIGIVCP 273
           I +                      +R SLK++VID+TA++E V + K GNGE       
Sbjct: 232 IDEP---------------------IRRSLKVKVIDDTAVLEAVPIPKTGNGEN-----K 291

Query: 274 TRPMQIKLDKSHEPDRGGKKAKR-SRRRAREAKVCEMHWSLGNV-------NEHQKNVEG 333
            +  ++   K   P R GK  K  S    ++ K  ++  ++  +       NE QKN  G
Sbjct: 292 KQKQEVDGKKLKLPRRKGKDVKNVSETSEKQKKTTQVGKAVNKLSLVGEAQNESQKN--G 351

Query: 334 NKI-VYSIKDMEALRFVNVAEQRRLWKAICKELLPIVAREYSSLTSSNYPMKIGSTSDPR 393
           + +  YS ++MEALRFVNV EQR+LW+     L   V +EY  L  S +   I    DPR
Sbjct: 352 HPLRKYSREEMEALRFVNVVEQRKLWRDTYTGLGDAVVKEYDDLAGSRHHKNIHLNFDPR 393

Query: 394 QHLVKREEAPSIMSVVAA 398
           QH  K+E+A   +  V++
Sbjct: 412 QHYGKKEDARRTLREVSS 393

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g12540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g12540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG5_CUCSA	1.9e-126	63.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G016410 PE=4 SV=1	[more]
A0A067L365_JATCU	1.2e-16	28.84	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23794 PE=4 SV=1	[more]
A0A061EJX6_THECC	3.5e-16	27.51	Spliceosome protein-related, putative OS=Theobroma cacao GN=TCM_020105 PE=4 SV=1	[more]
A0A067DEC1_CITSI	4.6e-16	29.28	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036273mg PE=4 S...	[more]
B9SX33_RICCO	7.9e-16	29.12	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1267370 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g12540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g12540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108967\|ref\|XP_008454478.1\|	3.2e-127	63.19	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494875 [Cucumis me...	[more]
gi\|449469156\|ref\|XP_004152287.1\|	2.7e-126	63.28	PREDICTED: uncharacterized protein LOC101215637 [Cucumis sativus]	[more]
gi\|645231962\|ref\|XP_008222643.1\|	3.1e-21	29.32	PREDICTED: uncharacterized protein LOC103322496 [Prunus mume]	[more]
gi\|1000944187\|ref\|XP_015581697.1\|	1.7e-16	29.19	PREDICTED: uncharacterized protein LOC8269748 [Ricinus communis]	[more]
gi\|643736562\|gb\|KDP42852.1\|	1.7e-16	28.84	hypothetical protein JCGZ_23794 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005681	spliceosomal complex

Vocabulary: **Biological Process**
Term	Definition
GO:0000387	spliceosomal snRNP assembly
GO:0000245	spliceosomal complex assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR017364	Gem-associated protein 2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000245	spliceosomal complex assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g12540.1	Cp4.1LG03g12540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017364	Gem-associated protein 2	PANTHER	PTHR12794:SF0	GEM-ASSOCIATED PROTEIN 2	coord: 324..391 score: 1.8
None	No IPR available	unknown	Coil	Coil	coord: 154..178 scor
None	No IPR available	PANTHER	PTHR12794	GEMIN2	coord: 324..391 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g12540	Cucsa.094600	Cucumber (Gy14) v1	cgycpeB0197
Cp4.1LG03g12540	CmaCh06G016360	Cucurbita maxima (Rimu)	cmacpeB837
Cp4.1LG03g12540	CmoCh06G016350	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g12540	CmoCh14G015240	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g12540	Cla010828	Watermelon (97103) v1	cpewmB604
Cp4.1LG03g12540	Csa4G016410	Cucumber (Chinese Long) v2	cpecuB615
Cp4.1LG03g12540	MELO3C017695	Melon (DHL92) v3.5.1	cpemeB588
Cp4.1LG03g12540	CSPI04G03570	Wild cucumber (PI 183967)	cpecpiB617
Cp4.1LG03g12540	Lsi07G000670	Bottle gourd (USVL1VR-Ls)	cpelsiB513
Cp4.1LG03g12540	MELO3C017696.2	Melon (DHL92) v3.6.1	cpemedB698
Cp4.1LG03g12540	CsaV3_4G003570	Cucumber (Chinese Long) v3	cpecucB0767
Cp4.1LG03g12540	Bhi01G002072	Wax gourd	cpewgoB0787
Cp4.1LG03g12540	CsGy4G003460	Cucumber (Gy14) v2	cgybcpeB552
Cp4.1LG03g12540	Carg15485	Silver-seed gourd	carcpeB0973
Cp4.1LG03g12540	Carg22435	Silver-seed gourd	carcpeB0278

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g12540	Cp4.1LG08g05890	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g12540	Watermelon (Charleston Gray)	cpewcgB566
Cp4.1LG03g12540	Cucurbita maxima (Rimu)	cmacpeB283