Cp4.1LG03g12380 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g12380
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA polymerase II transcription factor SIII (Elongin) subunit A
LocationCp4.1LG03 : 10302186 .. 10302767 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTCGAAGACGTTGGCGAAACCGATCTAAATTTTCTTGAACATATTTTGCCGCATTGCACCGTCGAGCAACTGATGCGTATAGAGAACTGTTCGAAAGGAAGAGACCTCACTCCAGTAACAAACAAATTGTGGAAAACATTCTACGAAAGAAAGTTTGGTAAAGATGCTGTCAACAGTGTTATTGAGATGATGAAGCATAAGGAATCGTTCAAATGGAAGCAAATGTACGAGCTGAAGACGAAGGAATTAGAAGAGAAGGCAGTAGAAATTGAGAAACGATATATACAAAATTGCCACAACGAAAAAGCTCGAAAACAGAGTCGTCAAGTAAAGATATGTGAGATATCGCCGCCGTCGAGTAAGGTTTTGAAGAAGCCAAAAGTACAGACAAAAGTTTGTCAAGTTTCGTCCGTAACCAATAATAAACGAAGCTACGTTGGAGGAACAAGCAAGATACTGAAAAAAGCCAGAAAAGAAACGTTACAGAGTATAGAGACGAAGAACGCGATAGCTTTTCGTAGAAATGCAGTTCAAAAGTAG

mRNA sequence

ATGTCTCAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTCGAAGACGTTGGCGAAACCGATCTAAATTTTCTTGAACATATTTTGCCGCATTGCACCGTCGAGCAACTGATGCGTATAGAGAACTGTTCGAAAGGAAGAGACCTCACTCCAGTAACAAACAAATTGTGGAAAACATTCTACGAAAGAAAGTTTGGTAAAGATGCTGTCAACAGTGTTATTGAGATGATGAAGCATAAGGAATCGTTCAAATGGAAGCAAATGTACGAGCTGAAGACGAAGGAATTAGAAGAGAAGGCAGTAGAAATTGAGAAACGATATATACAAAATTGCCACAACGAAAAAGCTCGAAAACAGAGTCGTCAAGTAAAGATATGTGAGATATCGCCGCCGTCGAGTAAGGTTTTGAAGAAGCCAAAAGTACAGACAAAAGTTTGTCAAGTTTCGTCCGTAACCAATAATAAACGAAGCTACGTTGGAGGAACAAGCAAGATACTGAAAAAAGCCAGAAAAGAAACGTTACAGAGTATAGAGACGAAGAACGCGATAGCTTTTCGTAGAAATGCAGTTCAAAAGTAG

Coding sequence (CDS)

ATGTCTCAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTCGAAGACGTTGGCGAAACCGATCTAAATTTTCTTGAACATATTTTGCCGCATTGCACCGTCGAGCAACTGATGCGTATAGAGAACTGTTCGAAAGGAAGAGACCTCACTCCAGTAACAAACAAATTGTGGAAAACATTCTACGAAAGAAAGTTTGGTAAAGATGCTGTCAACAGTGTTATTGAGATGATGAAGCATAAGGAATCGTTCAAATGGAAGCAAATGTACGAGCTGAAGACGAAGGAATTAGAAGAGAAGGCAGTAGAAATTGAGAAACGATATATACAAAATTGCCACAACGAAAAAGCTCGAAAACAGAGTCGTCAAGTAAAGATATGTGAGATATCGCCGCCGTCGAGTAAGGTTTTGAAGAAGCCAAAAGTACAGACAAAAGTTTGTCAAGTTTCGTCCGTAACCAATAATAAACGAAGCTACGTTGGAGGAACAAGCAAGATACTGAAAAAAGCCAGAAAAGAAACGTTACAGAGTATAGAGACGAAGAACGCGATAGCTTTTCGTAGAAATGCAGTTCAAAAGTAG

Protein sequence

MSQQVNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYERKFGKDAVNSVIEMMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQVKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIETKNAIAFRRNAVQK
Homology
[Close]
BLAST of Cp4.1LG03g12380 vs. TrEMBL
Match: A0A0K9REH1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080700 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           V  AID++R++ DVG TD + LEHILPHCTVEQLM IEN +  RDL+PVT+KLWK FYE 
Sbjct: 27  VQTAIDNIRYIGDVGPTDSHLLEHILPHCTVEQLMHIENATSERDLSPVTDKLWKKFYEA 86

Query: 65  KFGKDAVNSVIE-MMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FG  +V  V+E + K K +F W+Q+Y+ K KE+ E   E  +R  Q+  NE ARKQSRQ
Sbjct: 87  EFGAKSVEVVVERVKKFKVTFNWRQLYQAKLKEINENVEESLERLTQSYKNESARKQSRQ 146

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIETKNA 184
           +++C   PPSSK       +   C          ++  G S I KKA+ E   S+  KN 
Sbjct: 147 IQLCAKVPPSSK-------RRTFC---GAFGESSTFTNGKSSIFKKAKAEHFNSVAMKNR 206

Query: 185 IAFRRNAVQK 194
            A R+ AVQ+
Sbjct: 207 AAIRKGAVQQ 206

[Close]
BLAST of Cp4.1LG03g12380 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-35
Identity = 93/173 (53.76%), Postives = 113/173 (65.32%), Query Frame = 1 

Query: 1   MSQQVNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           ++  VNKAIDS++FL DVG+TDL  LE IL HCT +QL+ IENCSKGRDLTP+TNKLWK 
Sbjct: 11  LNSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKN 70

Query: 61  FYERKFGKDAVNSVIEMMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQ 120
           FYERKFGKD V+ V++     E+FKW  +Y  K KELE +A +IE R IQ+   EKARKQ
Sbjct: 71  FYERKFGKDDVDIVVK----NETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 130

Query: 121 SRQVKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKE 174
           SRQ+  C  S  S    K PK    V   S+ T          S  LKKA++E
Sbjct: 131 SRQIVFCG-SEDSLLSNKNPKSNRTVGFKSNTTK---------SVTLKKAKRE 169

[Close]
BLAST of Cp4.1LG03g12380 vs. TrEMBL
Match: F6H555_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.7e-35
Identity = 92/195 (47.18%), Postives = 120/195 (61.54%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           +  AID++R+L DVGETD+N L+HILPHCTV+QLM IE C++ RDL+ VT+KLWK FYE+
Sbjct: 77  IRTAIDNVRYLGDVGETDINLLDHILPHCTVDQLMHIEKCTEERDLSEVTDKLWKKFYEK 136

Query: 65  KFGKDAVNSVIEMMKHKE-SFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FG  + N V+E MK K+ SFKW ++YE K K+ +E   +   R  Q    E ARKQSRQ
Sbjct: 137 EFGVKSTNLVVERMKLKKVSFKWSKLYEAKLKDRDEAQKKSFDRIKQLYQKEDARKQSRQ 196

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGG------TSKILKKARKETLQS 184
           VKIC   PPSS                    NKR + GG       S ++KKA+ E L S
Sbjct: 197 VKICTKVPPSS--------------------NKRCFYGGPGTSNLKSNLMKKAKVECLNS 251

Query: 185 IETKNAIAFRRNAVQ 193
            E KN  A ++ A+Q
Sbjct: 257 PEVKNLAAMKKQALQ 251

[Close]
BLAST of Cp4.1LG03g12380 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.4e-33
Identity = 89/189 (47.09%), Postives = 122/189 (64.55%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           +  AID++R+L DVGETD + LE ILPHCT++QL+ +E  +KGRDL+PVT+KLWK FYE 
Sbjct: 27  IRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWKNFYEL 86

Query: 65  KFGKDAVNSVIEMMKHKE-SFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FG+ + N VIE MK K+ SF+W+Q+YE K K+++E   +   R  Q    E ARKQSRQ
Sbjct: 87  QFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDARKQSRQ 146

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIETKNA 184
           V++C   PPSSK         +     S      SYV   S I+KKA+ + ++S E KN 
Sbjct: 147 VQLCTKVPPSSK---------RSFFAGSGPGYNLSYV--KSNIMKKAKIDLMKSQEVKNL 204

Query: 185 IAFRRNAVQ 193
            A ++ AVQ
Sbjct: 207 AAMKKKAVQ 204

[Close]
BLAST of Cp4.1LG03g12380 vs. TrEMBL
Match: A0A068VD51_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002667001 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.7e-33
Identity = 85/189 (44.97%), Postives = 119/189 (62.96%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           V  A+ ++R+L +VGET+ + LE ILPHCT++QL+ +ENC++GRDL+PVTNKLWK F+ER
Sbjct: 12  VQIAVLNVRYLGNVGETEFHLLERILPHCTMDQLIHVENCTEGRDLSPVTNKLWKKFFER 71

Query: 65  KFGKDAVNSVI-EMMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FG ++   V+  M K +  FKW+++Y+ K++ELEEK  +I +R  Q   NE A KQ R+
Sbjct: 72  QFGAESAELVVARMKKRRVEFKWRELYKAKSQELEEKEKKISERLKQRYANEAAEKQKRR 131

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIETKNA 184
           V+IC   PPSS   K+                  S   G S I+KKA+ E L S E KN 
Sbjct: 132 VQICTKVPPSS--FKR--------SFFGAAGPYNSTSNGKSSIMKKAKLEFLNSREVKNL 190

Query: 185 IAFRRNAVQ 193
            A +  AVQ
Sbjct: 192 AAVKNKAVQ 190

[Close]
BLAST of Cp4.1LG03g12380 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 121.3 bits (303), Expect = 6.4e-28
Identity = 73/191 (38.22%), Postives = 114/191 (59.69%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           V KAID+++++  VG  D   LE IL HCT+EQL  IE+ +   DL+P+T+K WK FY++
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 65  KFGKDAVNSVIEMMKHKE--SFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSR 124
            +G++ +  +IE ++  +   FKW+ +YELK   +++K  E+  R  +   +E  RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 125 QVKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIETKN 184
           Q K+C  +PPS    K+P         +S +     +V   S I+KKA+ + L+S E KN
Sbjct: 138 QTKVCSKAPPS----KRP------FWGNSASGYNLGHV--KSNIMKKAKIDLLKSQEVKN 196

Query: 185 AIAFRRNAVQK 194
             A +RN +QK
Sbjct: 198 LTAIKRNTIQK 196

[Close]
BLAST of Cp4.1LG03g12380 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 102/199 (51.26%), Postives = 130/199 (65.33%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           VNKAID++RFL DVGETD++ LE ILPHCTV+QLM +E  S+GRDLTPVT+KLWK FYER
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDAVNSVIEMMKHKE-SFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FGK++  +VIE M+ K  +F+W Q+YE K +++E+   +   R  Q+   E ARKQSRQ
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGG---------TSKILKKARKET 184
           ++IC   PPSS                    NKRS+ G           +KILKKA+ E 
Sbjct: 135 IQICSKVPPSS--------------------NKRSFGGSGYGYNVANTKNKILKKAKIEV 193

Query: 185 LQSIETKNAIAFRRNAVQK 194
           LQS E KN  A+RRNAVQK
Sbjct: 195 LQSQEMKNIKAWRRNAVQK 193

[Close]
BLAST of Cp4.1LG03g12380 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.8e-40
Identity = 102/199 (51.26%), Postives = 130/199 (65.33%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           VNKAID+LRFL DVGETD++ L+ ILPHCTV+QLM +E  S+GRDLTPVT+KLWK FYER
Sbjct: 15  VNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDAVNSVIEMMKHKE-SFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FGK++  +VIE M+ K  +F+W Q+YE K +++E+   +   R  Q+   E ARKQSRQ
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGG---------TSKILKKARKET 184
           ++IC   PPSS                    NKRS+ G           +KILKKA+ E 
Sbjct: 135 IQICSKVPPSS--------------------NKRSFGGSGYGYNVANTKNKILKKAKIEV 193

Query: 185 LQSIETKNAIAFRRNAVQK 194
           LQS E KN  A+RRNAVQK
Sbjct: 195 LQSQEMKNIKAWRRNAVQK 193

[Close]
BLAST of Cp4.1LG03g12380 vs. NCBI nr
Match: gi|902213886|gb|KNA17359.1| (hypothetical protein SOVF_080700 [Spinacia oleracea])

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           V  AID++R++ DVG TD + LEHILPHCTVEQLM IEN +  RDL+PVT+KLWK FYE 
Sbjct: 27  VQTAIDNIRYIGDVGPTDSHLLEHILPHCTVEQLMHIENATSERDLSPVTDKLWKKFYEA 86

Query: 65  KFGKDAVNSVIE-MMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FG  +V  V+E + K K +F W+Q+Y+ K KE+ E   E  +R  Q+  NE ARKQSRQ
Sbjct: 87  EFGAKSVEVVVERVKKFKVTFNWRQLYQAKLKEINENVEESLERLTQSYKNESARKQSRQ 146

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKETLQSIETKNA 184
           +++C   PPSSK       +   C          ++  G S I KKA+ E   S+  KN 
Sbjct: 147 IQLCAKVPPSSK-------RRTFC---GAFGESSTFTNGKSSIFKKAKAEHFNSVAMKNR 206

Query: 185 IAFRRNAVQK 194
            A R+ AVQ+
Sbjct: 207 AAIRKGAVQQ 206

[Close]
BLAST of Cp4.1LG03g12380 vs. NCBI nr
Match: gi|658014169|ref|XP_008342397.1| (PREDICTED: transcription elongation factor B polypeptide 3-like [Malus domestica])

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 94/197 (47.72%), Postives = 121/197 (61.42%), Query Frame = 1 

Query: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
           +N AID+LR L DVGETD + L+ ILPHCTV+QLM +E  +KGRDLTP+T+KLWK FYE+
Sbjct: 22  INTAIDNLRRLGDVGETDSHLLKRILPHCTVDQLMHVEKSTKGRDLTPITDKLWKKFYEK 81

Query: 65  KFGKDAVNSVIEMMKHKE-SFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124
           +FG   VN VIE MK K+ +F+W Q+YE K KE++     I  +         ARKQSRQ
Sbjct: 82  EFGTTRVNEVIERMKQKKVAFRWSQLYEAKLKEVDMAENLIGDKLKSRYQEANARKQSRQ 141

Query: 125 VKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSY-------VGGTSKILKKARKETLQ 184
           V+IC   PPSS                    NKRS+       V G S ++KKA+ + L+
Sbjct: 142 VQICTKVPPSS--------------------NKRSWGNGPGYNVXGKSNLMKKAKLDFLK 198

Query: 185 SIETKNAIAFRRNAVQK 194
           S E KN  A +RNA+QK
Sbjct: 202 SNEVKNLAAMKRNALQK 198

[Close]
BLAST of Cp4.1LG03g12380 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 93/173 (53.76%), Postives = 113/173 (65.32%), Query Frame = 1 

Query: 1   MSQQVNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKT 60
           ++  VNKAIDS++FL DVG+TDL  LE IL HCT +QL+ IENCSKGRDLTP+TNKLWK 
Sbjct: 11  LNSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKN 70

Query: 61  FYERKFGKDAVNSVIEMMKHKESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQ 120
           FYERKFGKD V+ V++     E+FKW  +Y  K KELE +A +IE R IQ+   EKARKQ
Sbjct: 71  FYERKFGKDDVDIVVK----NETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 130

Query: 121 SRQVKICEISPPSSKVLKKPKVQTKVCQVSSVTNNKRSYVGGTSKILKKARKE 174
           SRQ+  C  S  S    K PK    V   S+ T          S  LKKA++E
Sbjct: 131 SRQIVFCG-SEDSLLSNKNPKSNRTVGFKSNTTK---------SVTLKKAKRE 169

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g12380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g12380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K9REH1_SPIOL1.2e-3546.84Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080700 PE=4 SV=1[more]
A0A0A0KJR8_CUCSA2.1e-3553.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1[more]
F6H555_VITVI2.7e-3547.18Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=... [more]
A0A061DJY1_THECC4.4e-3347.09Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=... [more]
A0A068VD51_COFCA9.7e-3344.97Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002667001 PE=4 SV=1[more]
BLAST of Cp4.1LG03g12380 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42780.16.4e-2838.22 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG03g12380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112953|ref|XP_008456387.1|1.4e-4051.26PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo][more]
gi|449450878|ref|XP_004143189.1|1.8e-4051.26PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus][more]
gi|902213886|gb|KNA17359.1|1.8e-3546.84hypothetical protein SOVF_080700 [Spinacia oleracea][more]
gi|658014169|ref|XP_008342397.1|2.3e-3547.72PREDICTED: transcription elongation factor B polypeptide 3-like [Malus domestica... [more]
gi|700193830|gb|KGN49034.1|3.0e-3553.76hypothetical protein Csa_6G511010 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR010684RNA_pol_II_trans_fac_SIII_A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g12380.1Cp4.1LG03g12380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 15..123
score: 6.5
NoneNo IPR availableunknownCoilCoilcoord: 87..107
scor
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 25..102
score: 8.
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 7..182
score: 2.8
NoneNo IPR availablePANTHERPTHR15141:SF53PROTEIN T23E1.3, ISOFORM Acoord: 7..182
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g12380Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g12380Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g12380Silver-seed gourdcarcpeB0973
Cp4.1LG03g12380Silver-seed gourdcarcpeB1446
Cp4.1LG03g12380Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g12380Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g12380Cucurbita maxima (Rimu)cmacpeB837