Cp4.1LG03g11440 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g11440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 11029577 .. 11031994 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGTGGGGAAATGGGAGTGCTCTCTCTTCCCTTATTTGCAATTTTGCAAATAAGTTTACTAACTGTGGGGCTGTCTGGATCAAGTTGTCATCTTAACTACAAGCCTTTACTCAAGGATGATGATGATGCTTGGCCGCACGTCTACCTAAAGGTCATTGCCATTTTTGTTTAGAGAGAGAGGAGAAGAATGGTACTAACCAGGTCACATTATGTGGGTCATTCAATGCATAAGAGAGAGAAGAAACAAATTTATTTCTTAGGAAGCATTTGTTACTGATTCTAGGACTGGTAGCTAGGTTGTGACTACTCATCTAATAACTTTTCATAGTATACTTTCAATTTTTTTAAATTTTATAGATTATGAGTCTCTTTGGAATGACTTAATTACAAGTGCTTAAAAGTTTCATTAAGTACTTGAAAAGTCATTCACAATAAGCCTGGTGTGTTAGTTGTTTTTGGTATTGTTCTCGGATTTGCATTTGAAATCTTAATTGATTTCAAAACCTGAAAACAGGTTACTTGATAAGAACAGCTTTTTCTAGCATCTAAAATTTGGAGTTAAAAAAAATGCTTGTAGGAAATAGACTACAAAGGCTAACGAACCTAACTTCAAAACTAAAATCTCTGTCAAAACCTAATAGAAAATGTAGAAGAAAAGGAATCTAGATGCCTGTGACAAAGATCTCTCAGTTTACATACAAGGAAAACCCTCATCGGACAAATCTTGGTATCCTTAATCCCTATTAACCATTCGTCATTAATGCCAAATAGAAGAGGAAGGGTGGCAACAAGGCAAGTTTGAATATACGGGCTGTGAATGAATGGAGGGGACATCAATTGGGAGAAGATAATAGTATTATACATCGGGTGGAAAGAGAAAAATAACAATAAATCTTGAAATGTGCTACAGAGGAAGATTAAATAATGAGGTCAATCTAGATTAAAGAGGGAGTAGTTCAGCAAATAAAAAAGAACATTTAATGCATGATGTTTTTAAATTTTAAAAGAGTTTTAGAGTTTCCAGGATATTTGTTGGGACAGAGTAAAACCTGGCAGCCTGCTTTTAAATTCCACTATAATTACGGGGAGAAAGTTAGGAAAGCTGCTACCCTTTTGTCATTTTCTTGATAGAGCAGTTCTCTTTACGAACTCCCTTCTTCAATATTATGTTTATAACAATGCCATGGACCGATGGCTTGTCGACTTTATAGTTTCACTTTCAATCTCTCTTTCTGAACCAGAAGGTTTTTGGTGATTCATCTCTTTCTGAACTGGGACTTTCCCTCCAATGGCTGTAGTATGTTCTGAAGCAGCCTCACAACGACTCAGAGCACAGGTAAAATGCCTTCTCTTCCTAAGCAAGTTTTTAATTTTCTTTTGGTTGTTCTTCTCCTCAGGCCTCTCTCAGCTAATCCCCTTCTTTCCCTTACAGGTTTGGGTCTTGAAAGTCTCTATTCACTGTGAAGGGTGCAAGAGGAAGGTTAAGAAGGTTCTTCAGAGCATTGATGGTACCATTTGATGTTGTTCACTTTAACTGTTTTCGGTTTCAAATGTGACAAAATTAACCGACAGTCATGAGCTAAACCATTATAGGAATAGGTACTTTTACAAGTGGCCCTTAGTCTAAAGCTTTGGAAGTGATGACCTTCTTAATATTGTAGGTGTTTATACGACTATCATTGACTCAGACCAACAGAAAGTCACGGTCACTGGAAATGTTAGTCTTGAAACGCTGACCAAGAGGTTGGCCAAAGCAGGTAAACATGCGGAAATATGGCCAGAAAAGCTAGGGGGAAAAGAGAAACAACTCATCAAGACGTTGGAGACTAACAAAGGCAACAGCCAAGAAAATGCAAGAAGTCCGGGTACTAATAAAGCTTCGGCAAAGAAGGTTGGGTTTAAGGTAACCCCTGTCGAGAACAAGCGTAAAGAACAGAATGAAAAGTCTAAGAATATTGAAAGCTCTTCCAGAAGGCCTTCGGCGGGGTCATCCGACTCCAAGGAGAATGCTATTGGACATGAGGGTTGTTCTCCAGACAAAGGTGGTGCAGGGAAAAGTGGTGAAAAGAAGGAAACCAAGGGGCAACCAGGTATTAGTGATAAATCAGGTTCAAACCACCAAAATGGACATGGGACACTCAATGTGGATCCAGATGTGGGCCACAAAAAGGCTAACCCACTGACCCAACAAATATACACGGGTCCAAAAGGTTGTTTTGTCCCTCCACCTACTTTGGGCTTAAATTACAATGCGCCGCATTTAGGTAAAGGCCCTGAATTTCTTTACAGTGTCCCACCGATTCCATTTTCATATTCAAATGATCAGACAGAAAATTACGAGGATCAAGCGAAGTCACAGGCCTACCTGGATTATTTCAGTGAAGAGAATGCCCATGGATGCTTCATCATGTGA

mRNA sequence

ATGTTGCGTGGGGAAATGGGAGTGCTCTCTCTTCCCTTATTTGCAATTTTGCAAATAAGTTTACTAACTGTGGGGCTGTCTGGATCAAGTTGTCATCTTAACTACAAGCCTTTACTCAAGGATGATGATGATGCTTGGCCGCACGTCTACCTAAAGTATGTTCTGAAGCAGCCTCACAACGACTCAGAGCACAGCCAAGAAAATGCAAGAAGTCCGGGTACTAATAAAGCTTCGGCAAAGAAGGTTGGGTTTAAGGTAACCCCTGTCGAGAACAAGCGTAAAGAACAGAATGAAAAGTCTAAGAATATTGAAAGCTCTTCCAGAAGGCCTTCGGCGGGGTCATCCGACTCCAAGGAGAATGCTATTGGACATGAGGGTTGTTCTCCAGACAAAGGTGGTGCAGGGAAAAGTGGTGAAAAGAAGGAAACCAAGGGGCAACCAGGTATTAGTGATAAATCAGGTTCAAACCACCAAAATGGACATGGGACACTCAATGTGGATCCAGATGTGGGCCACAAAAAGGCTAACCCACTGACCCAACAAATATACACGGGTCCAAAAGGTTGTTTTGTCCCTCCACCTACTTTGGGCTTAAATTACAATGCGCCGCATTTAGGTAAAGGCCCTGAATTTCTTTACAGTGTCCCACCGATTCCATTTTCATATTCAAATGATCAGACAGAAAATTACGAGGATCAAGCGAAGTCACAGGCCTACCTGGATTATTTCAGTGAAGAGAATGCCCATGGATGCTTCATCATGTGA

Coding sequence (CDS)

ATGTTGCGTGGGGAAATGGGAGTGCTCTCTCTTCCCTTATTTGCAATTTTGCAAATAAGTTTACTAACTGTGGGGCTGTCTGGATCAAGTTGTCATCTTAACTACAAGCCTTTACTCAAGGATGATGATGATGCTTGGCCGCACGTCTACCTAAAGTATGTTCTGAAGCAGCCTCACAACGACTCAGAGCACAGCCAAGAAAATGCAAGAAGTCCGGGTACTAATAAAGCTTCGGCAAAGAAGGTTGGGTTTAAGGTAACCCCTGTCGAGAACAAGCGTAAAGAACAGAATGAAAAGTCTAAGAATATTGAAAGCTCTTCCAGAAGGCCTTCGGCGGGGTCATCCGACTCCAAGGAGAATGCTATTGGACATGAGGGTTGTTCTCCAGACAAAGGTGGTGCAGGGAAAAGTGGTGAAAAGAAGGAAACCAAGGGGCAACCAGGTATTAGTGATAAATCAGGTTCAAACCACCAAAATGGACATGGGACACTCAATGTGGATCCAGATGTGGGCCACAAAAAGGCTAACCCACTGACCCAACAAATATACACGGGTCCAAAAGGTTGTTTTGTCCCTCCACCTACTTTGGGCTTAAATTACAATGCGCCGCATTTAGGTAAAGGCCCTGAATTTCTTTACAGTGTCCCACCGATTCCATTTTCATATTCAAATGATCAGACAGAAAATTACGAGGATCAAGCGAAGTCACAGGCCTACCTGGATTATTTCAGTGAAGAGAATGCCCATGGATGCTTCATCATGTGA

Protein sequence

MLRGEMGVLSLPLFAILQISLLTVGLSGSSCHLNYKPLLKDDDDAWPHVYLKYVLKQPHNDSEHSQENARSPGTNKASAKKVGFKVTPVENKRKEQNEKSKNIESSSRRPSAGSSDSKENAIGHEGCSPDKGGAGKSGEKKETKGQPGISDKSGSNHQNGHGTLNVDPDVGHKKANPLTQQIYTGPKGCFVPPPTLGLNYNAPHLGKGPEFLYSVPPIPFSYSNDQTENYEDQAKSQAYLDYFSEENAHGCFIM
Homology
[Close]
BLAST of Cp4.1LG03g11440 vs. TrEMBL
Match: A0A0A0L905_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154260 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.5e-62
Identity = 137/220 (62.27%), Postives = 153/220 (69.55%), Query Frame = 1 

Query: 44  DAWPHVYL---KYVLKQPHNDSEHSQENARSPGTNKASAKKVGFKVTPVENKRKEQNEKS 103
           + WP       K  +K    +    QEN RSPGTNKASAKKV FKV+PV+   +EQN KS
Sbjct: 79  EIWPEKQAGKEKQSIKMLETNKGKDQENVRSPGTNKASAKKVEFKVSPVKKNHEEQNNKS 138

Query: 104 KNIESSSRRPSAG----SSDSKENAIGHEGCSPDKGGAGKSGEKKETKGQPG--ISDKSG 163
           KNI SS ++P A     +S SK +  G EGCSPDK     S EK++ KG PG  ISDKS 
Sbjct: 139 KNIGSSPKKPPAREATPASGSKGSTTGQEGCSPDK-----SSEKRKMKGHPGNNISDKSS 198

Query: 164 SNHQNGHGTLNVDPDVGHKKANPLTQQIYTGPKGCFVPPPTLGLNYNAPHLGKGPEFLYS 223
           S  QNGHG  N D +VG K  NP+T QIYTGPKG   PPP LGLNYNAPHLGKGPEF Y 
Sbjct: 199 SIPQNGHGLFNEDLEVGLKNGNPMTHQIYTGPKGYIFPPPILGLNYNAPHLGKGPEFFYH 258

Query: 224 VPPIPFSYSNDQTENYEDQAKSQAYLDYFSEENAHGCFIM 255
           VPPIP+SYSND T+NYEDQAK Q YLDYFSEENAHGCFIM
Sbjct: 259 VPPIPYSYSNDPTDNYEDQAKPQTYLDYFSEENAHGCFIM 293

[Close]
BLAST of Cp4.1LG03g11440 vs. NCBI nr
Match: gi|449433403|ref|XP_004134487.1| (PREDICTED: uncharacterized protein LOC101211229 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 5.0e-62
Identity = 137/220 (62.27%), Postives = 153/220 (69.55%), Query Frame = 1 

Query: 44  DAWPHVYL---KYVLKQPHNDSEHSQENARSPGTNKASAKKVGFKVTPVENKRKEQNEKS 103
           + WP       K  +K    +    QEN RSPGTNKASAKKV FKV+PV+   +EQN KS
Sbjct: 79  EIWPEKQAGKEKQSIKMLETNKGKDQENVRSPGTNKASAKKVEFKVSPVKKNHEEQNNKS 138

Query: 104 KNIESSSRRPSAG----SSDSKENAIGHEGCSPDKGGAGKSGEKKETKGQPG--ISDKSG 163
           KNI SS ++P A     +S SK +  G EGCSPDK     S EK++ KG PG  ISDKS 
Sbjct: 139 KNIGSSPKKPPAREATPASGSKGSTTGQEGCSPDK-----SSEKRKMKGHPGNNISDKSS 198

Query: 164 SNHQNGHGTLNVDPDVGHKKANPLTQQIYTGPKGCFVPPPTLGLNYNAPHLGKGPEFLYS 223
           S  QNGHG  N D +VG K  NP+T QIYTGPKG   PPP LGLNYNAPHLGKGPEF Y 
Sbjct: 199 SIPQNGHGLFNEDLEVGLKNGNPMTHQIYTGPKGYIFPPPILGLNYNAPHLGKGPEFFYH 258

Query: 224 VPPIPFSYSNDQTENYEDQAKSQAYLDYFSEENAHGCFIM 255
           VPPIP+SYSND T+NYEDQAK Q YLDYFSEENAHGCFIM
Sbjct: 259 VPPIPYSYSNDPTDNYEDQAKPQTYLDYFSEENAHGCFIM 293

[Close]
BLAST of Cp4.1LG03g11440 vs. NCBI nr
Match: gi|659076813|ref|XP_008438880.1| (PREDICTED: uncharacterized protein LOC103483840 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 135/220 (61.36%), Postives = 152/220 (69.09%), Query Frame = 1 

Query: 44  DAWPHVYL---KYVLKQPHNDSEHSQENARSPGTNKASAKKVGFKVTPVENKRKEQNEKS 103
           + WP       K  +K    +    QEN RSPGTNKASAKKV FKV+PV+   +EQN KS
Sbjct: 79  EIWPEKQAGKEKQSIKMLETNKGKDQENVRSPGTNKASAKKVEFKVSPVKKNHEEQNNKS 138

Query: 104 KNIESSSRRPSAG----SSDSKENAIGHEGCSPDKGGAGKSGEKKETKGQPG--ISDKSG 163
           KNI SS ++  AG    +S SK +  G EGCSPDK     S EKK+ KG PG   SDKS 
Sbjct: 139 KNIGSSPKKLPAGEASPASGSKGSTTGQEGCSPDK-----SSEKKKMKGHPGNNSSDKSS 198

Query: 164 SNHQNGHGTLNVDPDVGHKKANPLTQQIYTGPKGCFVPPPTLGLNYNAPHLGKGPEFLYS 223
           SN QNGHG  N D +VG +  +P+  QIYT PKG   PPP LGLNYNAPHLGKGPEF Y 
Sbjct: 199 SNLQNGHGLFNEDLEVGLRNGSPMAHQIYTSPKGYIFPPPILGLNYNAPHLGKGPEFFYH 258

Query: 224 VPPIPFSYSNDQTENYEDQAKSQAYLDYFSEENAHGCFIM 255
           VPPIP+SYSNDQTENYED+AK Q YLDYFSEENAHGCFIM
Sbjct: 259 VPPIPYSYSNDQTENYEDRAKPQMYLDYFSEENAHGCFIM 293

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g11440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g11440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L905_CUCSA3.5e-6262.27Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154260 PE=4 SV=1[more]
BLAST of Cp4.1LG03g11440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g11440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433403|ref|XP_004134487.1|5.0e-6262.27PREDICTED: uncharacterized protein LOC101211229 [Cucumis sativus][more]
gi|659076813|ref|XP_008438880.1|1.2e-6061.36PREDICTED: uncharacterized protein LOC103483840 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030001 metal ion transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g11440.1Cp4.1LG03g11440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g11440Cucsa.253130Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g11440CmaCh00G004140Cucurbita maxima (Rimu)cmacpeB003
Cp4.1LG03g11440CmaCh14G016220Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g11440CmaCh06G014960Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g11440CmoCh06G014910Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g11440CmoCh14G016600Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g11440Cla021735Watermelon (97103) v1cpewmB613
Cp4.1LG03g11440Csa3G154260Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g11440MELO3C006660Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g11440ClCG05G006050Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g11440CSPI03G14370Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g11440Lsi05G015350Bottle gourd (USVL1VR-Ls)cpelsiB512
Cp4.1LG03g11440MELO3C006660.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g11440CsaV3_3G014590Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g11440CsGy3G014510Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g11440Carg17346Silver-seed gourdcarcpeB0860
Cp4.1LG03g11440Carg20111Silver-seed gourdcarcpeB1164
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g11440Cp4.1LG08g04940Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g11440Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g11440Watermelon (Charleston Gray)cpewcgB562
Cp4.1LG03g11440Watermelon (97103) v1cpewmB623
Cp4.1LG03g11440Melon (DHL92) v3.5.1cpemeB555
Cp4.1LG03g11440Melon (DHL92) v3.6.1cpemedB659
Cp4.1LG03g11440Silver-seed gourdcarcpeB0106
Cp4.1LG03g11440Silver-seed gourdcarcpeB0986
Cp4.1LG03g11440Wax gourdcpewgoB0762
Cp4.1LG03g11440Wax gourdcpewgoB0783
Cp4.1LG03g11440Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g11440Cucurbita pepo (Zucchini)cpecpeB337
Cp4.1LG03g11440Cucurbita maxima (Rimu)cmacpeB403
Cp4.1LG03g11440Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g11440Cucurbita moschata (Rifu)cmocpeB365
Cp4.1LG03g11440Cucurbita moschata (Rifu)cmocpeB862