Cp4.1LG03g10020 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g10020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 11834607 .. 11836469 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGTGGATTAATGTTAAATGTTCAATTATATAAACTCATTGGTTTCAACTGCTATCAATAGACATGCTTAAGGCTATGGTGATTGCATACTAAAAAAAGAATTCAAACTTCAGGCCGAACAAATAGACACCAATAGGACCGGCAACATCGCTATTTTCACAGACGGTTGCCGGCTGTTGGCGTCCCGATGAACAATTATCCGGTCATCCCTCAATGTAAATTCTTCATCACAGCTTTCAGATTACGAGAAAACACAATGGATTTAAAAATAAAGACGGCACAGGAAATTTATTACTAATCATGAAATTCGCATCATAAATTAGCACAATTGCCAATTGAGATGAACAATTACTTTCCGATTCTCAGAGCTTAGAAATCGAGAAGACCTTTTCCGGCAATCCAAGCAGCCGAGAGATCTCAGGGTGAAGACTTTTCCTGATTTCCGCGTAGGGTTCACCGTTCCACTTTCTCTCCGCCAACTGTTCCCCGAGCCTTACGGCAGCCTTCATGACGCCGTCCGCGCCTTCATGCGCCGATTCGACGATCCCCATCCTTACCGCCGGTTCGCCTTTCACTTTCATTCCCGTCAGTAACACATCGCGGCGGACAGAGCTCGAGCCGATCTTCGATTTAAACAGCGCCGAGAAATAATCGGGCAGAGTTAGCCCTAGATCTACTTCACTCATGTACAGAACGCCTCGATCGCTCCGCATGATCAAATAATCGTGGCTGAGAGCTAATAAGAAGCCGGCCGCGGCGGCGTGACCGGCGATGGCGGCGATTGTGGGCATAGGGAAGGAAAGGAGTTCGGCGACAACGGGCTTGAAGATCTGGACCATGTGGTGGAGGCGTTCGGCAGCGGCAGAAACAGAGCCGGCAGCTTGAGCCCAGGAGAGATCGAAACCGTTAGAGAAGAATTTTCCATGGGAAGTAGTGATGAGAACGGAGCCTGGAGAGGCTTCAGACTTGACTTTGGAAAGAGCTTTGAGGATGGAGGCGATGTAGGAGGGGCTGAGGCGGTGCTCGTCATCGCCGGTGAGAGTTAGGATGAAGAGATTGCCCCGCTTCTCGACCGTGCACATCTTTGGAAGGTTGTTCTTCTAATCCTACCCTCTGCACTCAACCAAATATCACACTATTTATCTCCAAATCAAAAATAAAATAGCGTTCGGACTCATAGACTATTCAATCTTATCAACATTTTCTTCCAATTCAAAATTTTCCTTCAATTCATTATCACTACTAGACTACATAAATAGCATACCAAATATAAATATAAATTTTTTTTTCTCTAATAAATAATGTCCAATGTCCAAGATGTTAAAGCATATTAAATCATCATTAACCGTTAAGATCCTTCTCACCTAGTAAATCAAAAGGACAATCCTTCGCAAACATGAATTCATCGCTCGATTAATATTGAGTCACATATCATCATCATGTAAAATAGAATACTGTTACTCACGTGTCTCCAAACAAACCATTTAGATAAAATGATTTAGTAGAGTTATTAATTTATTTTGTGACCGGATCCACCAAAACGACGCATCGAATGCAACTACACTTCCCTTTACCTCGCCTGTTTACATCTTTGCATTCAATTCATTTAACAGCAAACACATTTCAGGATACAGACTCTTTCTAATCTCTGCGTATACTTCTCCATCCCACTTCCTCTTCGCCAACGTCTCCGCCATTGCCACCGCCGCATCCATCAGCGTCTCCTCGTCGTTGTACGCAGCGTCTGCAATTCCCAACTTTGTCGCTGTTTCACCGTTGATCTTCATCCCCGCCAGCAGCACGTCCCGCCGGACCGAAGCTGAACTGATCTTTGACCTCATCAACGCCGCAATGTAA

mRNA sequence

ATGAAGCTTAGAAATCGAGAAGACCTTTTCCGGCAATCCAAGCAGCCGAGAGATCTCAGGGTGAAGACTTTTCCTGATTTCCGCGTAGGGTTCACCGTTCCACTTTCTCTCCGCCAACTGTTCCCCGAGCCTTACGGCAGCCTTCATGACGCCGTCCGCGCCTTCATGCGCCGATTCGACGATCCCCATCCTTACCGCCGGTTCGCCTTTCACTTTCATTCCCAAGCCGGCCGCGGCGGCGTGACCGGCGATGGCGGCGATTGTGGGCATAGGGAAGGAAAGGAGTTCGGCGACAACGGGCTTGAAGATCTGGACCATGTGGTGGAGGCGTTCGGCAGCGGCAGAAACAGAGCCGGCAGCTTGAGCCCAGGAGAGATCGAAACCGTTAGAGAAGAATTTTCCATGGGAAGTAGTGATGAGAACGGAGCCTGGAGAGGCTTCAGACTTGACTTTGGAAAGAGCTTTGAGGATGGAGGCGATGTAGGAGGGGCTGAGGCGGTGCTCGTCATCGCCGGATACAGACTCTTTCTAATCTCTGCGTATACTTCTCCATCCCACTTCCTCTTCGCCAACGTCTCCGCCATTGCCACCGCCGCATCCATCAGCGTCTCCTCGTCGTTGTACGCAGCGTCTGCAATTCCCAACTTTGTCGCTGTTTCACCGTTGATCTTCATCCCCGCCAGCAGCACGTCCCGCCGGACCGAAGCTGAACTGATCTTTGACCTCATCAACGCCGCAATGTAA

Coding sequence (CDS)

ATGAAGCTTAGAAATCGAGAAGACCTTTTCCGGCAATCCAAGCAGCCGAGAGATCTCAGGGTGAAGACTTTTCCTGATTTCCGCGTAGGGTTCACCGTTCCACTTTCTCTCCGCCAACTGTTCCCCGAGCCTTACGGCAGCCTTCATGACGCCGTCCGCGCCTTCATGCGCCGATTCGACGATCCCCATCCTTACCGCCGGTTCGCCTTTCACTTTCATTCCCAAGCCGGCCGCGGCGGCGTGACCGGCGATGGCGGCGATTGTGGGCATAGGGAAGGAAAGGAGTTCGGCGACAACGGGCTTGAAGATCTGGACCATGTGGTGGAGGCGTTCGGCAGCGGCAGAAACAGAGCCGGCAGCTTGAGCCCAGGAGAGATCGAAACCGTTAGAGAAGAATTTTCCATGGGAAGTAGTGATGAGAACGGAGCCTGGAGAGGCTTCAGACTTGACTTTGGAAAGAGCTTTGAGGATGGAGGCGATGTAGGAGGGGCTGAGGCGGTGCTCGTCATCGCCGGATACAGACTCTTTCTAATCTCTGCGTATACTTCTCCATCCCACTTCCTCTTCGCCAACGTCTCCGCCATTGCCACCGCCGCATCCATCAGCGTCTCCTCGTCGTTGTACGCAGCGTCTGCAATTCCCAACTTTGTCGCTGTTTCACCGTTGATCTTCATCCCCGCCAGCAGCACGTCCCGCCGGACCGAAGCTGAACTGATCTTTGACCTCATCAACGCCGCAATGTAA

Protein sequence

MKLRNREDLFRQSKQPRDLRVKTFPDFRVGFTVPLSLRQLFPEPYGSLHDAVRAFMRRFDDPHPYRRFAFHFHSQAGRGGVTGDGGDCGHREGKEFGDNGLEDLDHVVEAFGSGRNRAGSLSPGEIETVREEFSMGSSDENGAWRGFRLDFGKSFEDGGDVGGAEAVLVIAGYRLFLISAYTSPSHFLFANVSAIATAASISVSSSLYAASAIPNFVAVSPLIFIPASSTSRRTEAELIFDLINAAM
Homology
[Close]
BLAST of Cp4.1LG03g10020 vs. TrEMBL
Match: A0A0S3SUR8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G357900 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1 

Query: 78  RGGVTGDGGDCGHREGKEFGDNGLEDLDHVVEAFGSGRNRAGSLS-PGEIETVREEFSMG 137
           RG VTGD GD G  +G+E G++G + + H  EA  +G  R GS + P E+E + EE ++G
Sbjct: 127 RGSVTGDSGDGGDGKGEECGEDGAKGVRHSAEA-DAGSLRVGSCTRPAEVEPIAEESALG 186

Query: 138 SSDENGAWRGFRLDFGKSFEDGGDVGGAEAVLVIA 172
             DE G      +D G+S E+GG+  G E VL +A
Sbjct: 187 GGDEGGGGGCLGVDLGESGEEGGEECGVETVLFVA 220

[Close]
BLAST of Cp4.1LG03g10020 vs. NCBI nr
Match: gi|965610121|dbj|BAT96612.1| (hypothetical protein VIGAN_08357900 [Vigna angularis var. angularis])

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1 

Query: 78  RGGVTGDGGDCGHREGKEFGDNGLEDLDHVVEAFGSGRNRAGSLS-PGEIETVREEFSMG 137
           RG VTGD GD G  +G+E G++G + + H  EA  +G  R GS + P E+E + EE ++G
Sbjct: 127 RGSVTGDSGDGGDGKGEECGEDGAKGVRHSAEA-DAGSLRVGSCTRPAEVEPIAEESALG 186

Query: 138 SSDENGAWRGFRLDFGKSFEDGGDVGGAEAVLVIA 172
             DE G      +D G+S E+GG+  G E VL +A
Sbjct: 187 GGDEGGGGGCLGVDLGESGEEGGEECGVETVLFVA 220

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g10020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g10020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S3SUR8_PHAAN2.1e-0842.11Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G357900 PE=... [more]
BLAST of Cp4.1LG03g10020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g10020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|965610121|dbj|BAT96612.1|3.1e-0842.11hypothetical protein VIGAN_08357900 [Vigna angularis var. angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0005575 cellular_component
cellular_component GO:0031011 Ino80 complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g10020.1Cp4.1LG03g10020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g10020CmoCh14G018370Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g10020ClCG05G004440Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g10020CsGy3G012320Cucumber (Gy14) v2cgybcpeB406
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g10020Cp4.1LG08g03540Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g10020Silver-seed gourdcarcpeB0334
Cp4.1LG03g10020Silver-seed gourdcarcpeB1060
Cp4.1LG03g10020Silver-seed gourdcarcpeB1098
Cp4.1LG03g10020Silver-seed gourdcarcpeB1331
Cp4.1LG03g10020Silver-seed gourdcarcpeB1504
Cp4.1LG03g10020Cucumber (Chinese Long) v3cpecucB0746
Cp4.1LG03g10020Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g10020Wax gourdcpewgoB0764
Cp4.1LG03g10020Wax gourdcpewgoB0800
Cp4.1LG03g10020Wax gourdcpewgoB0802
Cp4.1LG03g10020Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g10020Cucurbita pepo (Zucchini)cpecpeB265
Cp4.1LG03g10020Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g10020Cucurbita pepo (Zucchini)cpecpeB478
Cp4.1LG03g10020Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g10020Cucumber (Gy14) v1cgycpeB1010
Cp4.1LG03g10020Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g10020Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g10020Cucurbita maxima (Rimu)cmacpeB535
Cp4.1LG03g10020Cucurbita maxima (Rimu)cmacpeB640
Cp4.1LG03g10020Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g10020Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g10020Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g10020Cucurbita moschata (Rifu)cmocpeB491
Cp4.1LG03g10020Cucurbita moschata (Rifu)cmocpeB590
Cp4.1LG03g10020Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g10020Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g10020Wild cucumber (PI 183967)cpecpiB598
Cp4.1LG03g10020Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g10020Cucumber (Chinese Long) v2cpecuB596
Cp4.1LG03g10020Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g10020Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g10020Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g10020Bottle gourd (USVL1VR-Ls)cpelsiB508
Cp4.1LG03g10020Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g10020Watermelon (Charleston Gray)cpewcgB569
Cp4.1LG03g10020Watermelon (97103) v1cpewmB605
Cp4.1LG03g10020Watermelon (97103) v1cpewmB613
Cp4.1LG03g10020Watermelon (97103) v1cpewmB622
Cp4.1LG03g10020Silver-seed gourdcarcpeB0327
Cp4.1LG03g10020Melon (DHL92) v3.5.1cpemeB578
Cp4.1LG03g10020Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g10020Cucumber (Gy14) v2cgybcpeB231
Cp4.1LG03g10020Melon (DHL92) v3.6.1cpemedB685
Cp4.1LG03g10020Melon (DHL92) v3.6.1cpemedB693