Cp4.1LG03g09780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g09780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L14, putative
LocationCp4.1LG03 : 11911539 .. 11914196 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAGAAGGAATGGATTATATGGACCCAGTTCAAAGAGGAAAGAACCCTAGGCTCGTCGCTCGTCTCTGAAAGACCCTACAACTCGAATATGGTGAGGATTTTCTTCCTTGTTTTTTCTGTTCCTAACGACGAATCTATAGCGTGTGGTGTTATAATTTGTTCGTAGTTTCTGTCCTGCGAATTGTTCTTTAATTCTATGTTTTCTTTGTTATCGGTTCTGTAGCCGTTCAAGAGGTACGTCGAGATCGGGAGGGTCGCTCTTGTAAACTACGGCGAAGACTATGGAAAGCTCGTTGTCATTGTCGATGTCATTGACCAGAACAGAGTATGTTTTTCTTGCTATTACTTGTGATTTTTATCGATGAGCAGTAATTTATAGTTTGAAGTTGTATCCGTCGTCTTGGATGTTTGGAAGACAAGGAAACAAGAAGATATATATTTAACAGGACACAATCCTTGGTTCTATTTCGAACGTATTCCTATAGCTATGGATTGATTTCTTCTGAATTTGATGTTTGTGTCATGATCTTAACATACATGTCTCATCAATTCCGCAATTTATTATCTATGAAAATCATTCTATGGCTTCTACCGCCCTCGTTGTAAATTGGGAAGGTCTTTTGTAAATGTTATGGAGTAAATTTCAATCAATGAAATTGTCTGTTATATGTATATAAACATTTTGTAGCTTCTTCAAGTTTGAAGTGTTAACTATGGAACAATCTATTGCATTTCTTATTTAAAGTCACGCTCATTGATTAGGTCATTAAGTAGTTGTCATTAAAGCGTTAGTTGGGTTGAGGACGCATATTATTATTGATGGATGATTAAATTTGTAATAGTCCAAGCCCGCTAGCAGATATTGTCCTCTTTGGACTTTTCTTTTCGGGCTTCCCTTTAAGGTTTTTAAAACGCATCTACTAGGGAGAGGTTTCCACACCCTTATAAGGACTGCTTTGTTTCCCTCTCCAACCGATATGTGATCTCACAATCTATCCCCTTGGGGGCCTAGTGTCCTTGTTGGCACTCCTCCTGGTGTCTGGCTCTTATACCATTGTAATAACCCAAGCTCACCGTTAGCCGATAATGTCCTCTTTGGACTTTCCCTTTCGGGCTTCCTCTCAATTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCATACCCTTATGAGGAATGTTTTGTTCCTCTCTCCAACCGATGTGGGATCTCACAAACCCAAGGCTTGAACAGTTTTCTCTGACTGATTCTCCACCGACCCCTAATGGATGTTTGGCGGATACTTTAAGTGTATGGTTGTTTGAAGTTCGGATGACTTAAGTTGTTTTTATCTCCTGAATGAATGTGACTATATATTATCCAATTGTCCCTGTTTTGAAGAACAGGAAGGATTTTAATGGATTTTTCCCATGTATCCATTTTTTGTTGTCATTTCCTGGTGATGAAGTTTTTGTTTCAATATTTGATTAGTTGCTTCCAACATTATCTTAGCTCCGCTATTAAAGCATCTCTACTTCCTTCCTCTTTAAGAGGTTTGTACTGTATCATTCTCAAAAAAAGCTTTGGTTAGTTGCTCATTCTATCATTTCATTAATGCTACTATATACAGGCTTTGGTAGATGCTCCTGATATGGTCAGGTCTCAGATGAACTTCAAGAGACTTTCTCTTACTGACATAAAAATTGACATTAAGAGAGTTCCTAGGAAGAAGGAACTCATTGAAGCTATGAAGGGTGCAGGTATGCTATTCATTTTTCAACTTATTTCGCAAATACCCAATTCCTTTCTACCTACCCCCGTCCCCCGTCCCTTGTCGTCATCTTTGTTTGCTGTAAGTTTAACCCGTTGCCTCGATCATCTTAGATGTTCAAAAAAAGTGGGAGGATAGCTCTTGGGGGAGAAAACTGCTTGTCAAGAAAAGGAGGGCAGCTCTTAATGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGGTCTCTGCCCTTCCTGTTGTATACTTTTTAGCCCTTTCTTATGCTTTAGTACGTGTAGGAGTTTCAAATCCTCATGGATTCCCAATACAAGTTTGACTTTACTAACGATGGGCATTATCATTTTGCAGAGAGGTGGATTGGTCAGGCAAGAGCTTGCAAAACTGAAAAAGAGTGAAGCTTAGAGTAATCGCATTTCTTCTGTAGCTTCAAATTTTGTTAGAGAACAATTTATGAGGTGTGGATTGTTATCCCTTTTGTTCCTCCAGCCCTTGAGAGTTGGGGGTGTATCTCAAGTACATGAGAGTTTAGTGAGTTTTTATACAGAGTTGGGTTAATCCCAATGTGCCAGCATTAGTCGAATTTAATTAATATATATATTGTTAGGAATCACGGCTTTTCACATCGCAATGGTATGATATTATCCACATTGAGCATAAGCTCTCATGGTTTTGCTTTGGGCTTTCCCAAAAGGCCTCGTACCAATAGAGATTGTATTCTTCACTTATAACCCCATGATCTTCCACTAAATTAACACTAAATTAACCAAGGTGGAACTCTCTCTCTCTTTTTATATATATATATTAATTTATTTATTATTATAGGAATTCTGCCTACCATAAGCACCCAACCTTGACTAGGGGGTGTTTCTCTAGATTATCAATTGAAAAAGGAGCTTGAAAAAA

mRNA sequence

TGTAGAAGGAATGGATTATATGGACCCAGTTCAAAGAGGAAAGAACCCTAGGCTCGTCGCTCGTCTCTGAAAGACCCTACAACTCGAATATGCCGTTCAAGAGGTACGTCGAGATCGGGAGGGTCGCTCTTGTAAACTACGGCGAAGACTATGGAAAGCTCGTTGTCATTGTCGATGTCATTGACCAGAACAGAGCTTTGGTAGATGCTCCTGATATGGTCAGGTCTCAGATGAACTTCAAGAGACTTTCTCTTACTGACATAAAAATTGACATTAAGAGAGTTCCTAGGAAGAAGGAACTCATTGAAGCTATGAAGGGTGCAGATGTTCAAAAAAAGTGGGAGGATAGCTCTTGGGGGAGAAAACTGCTTGTCAAGAAAAGGAGGGCAGCTCTTAATGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGGTCTCTGCCCTTCCTGTTGTATACTTTTTAGCCCTTTCTTATGCTTTAAGAGGTGGATTGGTCAGGCAAGAGCTTGCAAAACTGAAAAAGAGTGAAGCTTAGAGTAATCGCATTTCTTCTGTAGCTTCAAATTTTGTTAGAGAACAATTTATGAGGTGTGGATTGTTATCCCTTTTGTTCCTCCAGCCCTTGAGAGTTGGGGGTGTATCTCAAGTACATGAGAGTTTAGTGAGTTTTTATACAGAGTTGGGTTAATCCCAATGTGCCAGCATTAGTCGAATTTAATTAATATATATATTGTTAGGAATCACGGCTTTTCACATCGCAATGGTATGATATTATCCACATTGAGCATAAGCTCTCATGGTTTTGCTTTGGGCTTTCCCAAAAGGCCTCGTACCAATAGAGATTGTATTCTTCACTTATAACCCCATGATCTTCCACTAAATTAACACTAAATTAACCAAGGTGGAACTCTCTCTCTCTTTTTATATATATATATTAATTTATTTATTATTATAGGAATTCTGCCTACCATAAGCACCCAACCTTGACTAGGGGGTGTTTCTCTAGATTATCAATTGAAAAAGGAGCTTGAAAAAA

Coding sequence (CDS)

ATGCCGTTCAAGAGGTACGTCGAGATCGGGAGGGTCGCTCTTGTAAACTACGGCGAAGACTATGGAAAGCTCGTTGTCATTGTCGATGTCATTGACCAGAACAGAGCTTTGGTAGATGCTCCTGATATGGTCAGGTCTCAGATGAACTTCAAGAGACTTTCTCTTACTGACATAAAAATTGACATTAAGAGAGTTCCTAGGAAGAAGGAACTCATTGAAGCTATGAAGGGTGCAGATGTTCAAAAAAAGTGGGAGGATAGCTCTTGGGGGAGAAAACTGCTTGTCAAGAAAAGGAGGGCAGCTCTTAATGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGGTCTCTGCCCTTCCTGTTGTATACTTTTTAGCCCTTTCTTATGCTTTAAGAGGTGGATTGGTCAGGCAAGAGCTTGCAAAACTGAAAAAGAGTGAAGCTTAG

Protein sequence

MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIDIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSALPVVYFLALSYALRGGLVRQELAKLKKSEA
Homology
[Close]
BLAST of Cp4.1LG03g09780 vs. Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-51
Identity = 110/149 (73.83%), Postives = 120/149 (80.54%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRAALNDFDRFK+MLAKIK    
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R G+VRQELAKLK+  A
Sbjct: 121 ------------RAGIVRQELAKLKREIA 133

[Close]
BLAST of Cp4.1LG03g09780 vs. Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-51
Identity = 109/146 (74.66%), Postives = 119/146 (81.51%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA LNDFDRFK+MLAKIK    
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKK 147
                       + G+VRQELAKLKK
Sbjct: 121 ------------KAGVVRQELAKLKK 130

[Close]
BLAST of Cp4.1LG03g09780 vs. Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-50
Identity = 106/149 (71.14%), Postives = 121/149 (81.21%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVAL+NYG+DYG+LVVIVDVIDQ RALVDAPDM RS +NFKRLSLTD+KI
Sbjct: 1   MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVP+KK+LI+A++ ADV+ KW  SSWGRKL+VKK RAALNDFDRFK+MLAKIK    
Sbjct: 61  DIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R   VRQELAKLKK+ A
Sbjct: 121 ------------RAAGVRQELAKLKKTAA 133

[Close]
BLAST of Cp4.1LG03g09780 vs. Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-23
Identity = 64/135 (47.41%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAP--DMVRSQMNFKRLSLTDI 60
           M F+R+VEIGRVA   YG D GKLV IVDVIDQNRALVD P   + R  MNFK L LT++
Sbjct: 1   MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNL 60

Query: 61  KIDIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVS 120
           K       +   + +A +  ++ KKWE+S   +K+  K++R  L DF+RFKLM AK   +
Sbjct: 61  KAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARN 120

Query: 121 ALPVVYFLALSYALR 134
            L  + F  L  AL+
Sbjct: 121 RLIKIEFGKLRKALK 135

[Close]
BLAST of Cp4.1LG03g09780 vs. Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 61/121 (50.41%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPD--MVRSQMNFKRLSLTDI 60
           M F R+VE GRVALV+YGE   KLVVIVD++DQNR LVD+P   + R  +N KR++LT I
Sbjct: 1   MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSI 60

Query: 61  KI-DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKV 119
           K+ DI R     E+      A V + +  S WG+KL  +++RAAL+DF RFK+M+A++K 
Sbjct: 61  KVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKK 120

[Close]
BLAST of Cp4.1LG03g09780 vs. TrEMBL
Match: A0A0A0L725_CUCSA (Csf-1 protein OS=Cucumis sativus GN=Csa_3G134920 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.7e-59
Identity = 126/149 (84.56%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVPRKKELIEAMK  DVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVRQEL+KLKKS++
Sbjct: 121 ------------RAGLVRQELSKLKKSQS 133

[Close]
BLAST of Cp4.1LG03g09780 vs. TrEMBL
Match: A0A0A0L4D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134930 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.0e-59
Identity = 126/147 (85.71%), Postives = 129/147 (87.76%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVPRKKEL+EAMK ADVQKKWEDSSWGRKLLVK+RRA+LNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKS 148
                       R GLVRQELAKLKKS
Sbjct: 121 ------------RAGLVRQELAKLKKS 131

[Close]
BLAST of Cp4.1LG03g09780 vs. TrEMBL
Match: Q9SXL9_CUCSA (Csf-1 protein (Fragment) OS=Cucumis sativus GN=Csf-1 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-58
Identity = 122/149 (81.88%), Postives = 129/149 (86.58%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 6   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 65

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVP+KKELIEAMK  DVQKKWE+SSWGRKL+VKKRRA+LNDFDRFKLMLAKIK    
Sbjct: 66  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIK---- 125

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVRQELAKLKK+EA
Sbjct: 126 ------------RAGLVRQELAKLKKAEA 138

[Close]
BLAST of Cp4.1LG03g09780 vs. TrEMBL
Match: A0A0A0LIH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173070 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-58
Identity = 122/149 (81.88%), Postives = 129/149 (86.58%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVP+KKELIEAMK  DVQKKWE+SSWGRKL+VKKRRA+LNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVRQELAKLKK+EA
Sbjct: 121 ------------RAGLVRQELAKLKKAEA 133

[Close]
BLAST of Cp4.1LG03g09780 vs. TrEMBL
Match: M5XHS7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013229mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.4e-55
Identity = 119/149 (79.87%), Postives = 127/149 (85.23%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVP+KKEL+ AM+ ADV+KKWE+SSWGRKL+V+KRRAALNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPKKKELLAAMEAADVKKKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVR ELAKLKK  A
Sbjct: 121 ------------RAGLVRTELAKLKKESA 133

[Close]
BLAST of Cp4.1LG03g09780 vs. TAIR10
Match: AT2G20450.1 (AT2G20450.1 Ribosomal protein L14)

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-52
Identity = 110/149 (73.83%), Postives = 120/149 (80.54%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRAALNDFDRFK+MLAKIK    
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R G+VRQELAKLK+  A
Sbjct: 121 ------------RAGIVRQELAKLKREIA 133

[Close]
BLAST of Cp4.1LG03g09780 vs. TAIR10
Match: AT4G27090.1 (AT4G27090.1 Ribosomal protein L14)

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-52
Identity = 109/146 (74.66%), Postives = 119/146 (81.51%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA LNDFDRFK+MLAKIK    
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKK 147
                       + G+VRQELAKLKK
Sbjct: 121 ------------KAGVVRQELAKLKK 130

[Close]
BLAST of Cp4.1LG03g09780 vs. NCBI nr
Match: gi|449432538|ref|XP_004134056.1| (PREDICTED: 60S ribosomal protein L14-1-like [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 6.7e-59
Identity = 126/149 (84.56%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVPRKKELIEAMK  DVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVRQEL+KLKKS++
Sbjct: 121 ------------RAGLVRQELSKLKKSQS 133

[Close]
BLAST of Cp4.1LG03g09780 vs. NCBI nr
Match: gi|659076099|ref|XP_008438500.1| (PREDICTED: 60S ribosomal protein L14-1-like [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 6.7e-59
Identity = 126/149 (84.56%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 68  MPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 127

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVPRKKELIEAMK  DVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIK    
Sbjct: 128 DIKRVPRKKELIEAMKAGDVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIK---- 187

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVRQEL+KLKKS++
Sbjct: 188 ------------RAGLVRQELSKLKKSQS 200

[Close]
BLAST of Cp4.1LG03g09780 vs. NCBI nr
Match: gi|449432536|ref|XP_004134055.1| (PREDICTED: 60S ribosomal protein L14-2-like [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-58
Identity = 126/147 (85.71%), Postives = 129/147 (87.76%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVPRKKEL+EAMK ADVQKKWEDSSWGRKLLVK+RRA+LNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKS 148
                       R GLVRQELAKLKKS
Sbjct: 121 ------------RAGLVRQELAKLKKS 131

[Close]
BLAST of Cp4.1LG03g09780 vs. NCBI nr
Match: gi|659076103|ref|XP_008438503.1| (PREDICTED: probable 60S ribosomal protein L14 [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 3.3e-58
Identity = 125/147 (85.03%), Postives = 129/147 (87.76%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQ+NFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQINFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVPRKKEL+EAMK ADVQKKWEDSSWGRKLLVK+RRA+LNDFDRFKLMLAKIK    
Sbjct: 61  DIKRVPRKKELMEAMKAADVQKKWEDSSWGRKLLVKQRRASLNDFDRFKLMLAKIK---- 120

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKS 148
                       R GLVRQELAKLKKS
Sbjct: 121 ------------RAGLVRQELAKLKKS 131

[Close]
BLAST of Cp4.1LG03g09780 vs. NCBI nr
Match: gi|5762251|dbj|BAA83469.1| (Csf-1 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-57
Identity = 122/149 (81.88%), Postives = 129/149 (86.58%), Query Frame = 1 

Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGR+AL+NYGEDYGKLVVIVDVIDQNRALVDAPDM RSQMNFKRLSLTDIKI
Sbjct: 6   MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 65

Query: 61  DIKRVPRKKELIEAMKGADVQKKWEDSSWGRKLLVKKRRAALNDFDRFKLMLAKIKVSAL 120
           DIKRVP+KKELIEAMK  DVQKKWE+SSWGRKL+VKKRRA+LNDFDRFKLMLAKIK    
Sbjct: 66  DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIK---- 125

Query: 121 PVVYFLALSYALRGGLVRQELAKLKKSEA 150
                       R GLVRQELAKLKK+EA
Sbjct: 126 ------------RAGLVRQELAKLKKAEA 138

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g09780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL141_ARATH2.3e-5173.8360S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1[more]
RL142_ARATH3.9e-5174.6660S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1[more]
RL14_PEA1.5e-5071.14Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1[more]
RL14_LUMRU2.7e-2347.4160S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1[more]
RL14_GRIJA1.3e-2250.4160S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1[more]
BLAST of Cp4.1LG03g09780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L725_CUCSA4.7e-5984.56Csf-1 protein OS=Cucumis sativus GN=Csa_3G134920 PE=4 SV=1[more]
A0A0A0L4D3_CUCSA8.0e-5985.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134930 PE=4 SV=1[more]
Q9SXL9_CUCSA8.8e-5881.88Csf-1 protein (Fragment) OS=Cucumis sativus GN=Csf-1 PE=2 SV=1[more]
A0A0A0LIH9_CUCSA8.8e-5881.88Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173070 PE=4 SV=1[more]
M5XHS7_PRUPE1.4e-5579.87Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013229mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g09780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20450.11.3e-5273.83 Ribosomal protein L14[more]
AT4G27090.12.2e-5274.66 Ribosomal protein L14[more]
BLAST of Cp4.1LG03g09780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432538|ref|XP_004134056.1|6.7e-5984.56PREDICTED: 60S ribosomal protein L14-1-like [Cucumis sativus][more]
gi|659076099|ref|XP_008438500.1|6.7e-5984.56PREDICTED: 60S ribosomal protein L14-1-like [Cucumis melo][more]
gi|449432536|ref|XP_004134055.1|1.1e-5885.71PREDICTED: 60S ribosomal protein L14-2-like [Cucumis sativus][more]
gi|659076103|ref|XP_008438503.1|3.3e-5885.03PREDICTED: probable 60S ribosomal protein L14 [Cucumis melo][more]
gi|5762251|dbj|BAA83469.1|1.3e-5781.88Csf-1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR014722Rib_L2_dom2
IPR008991Translation_prot_SH3-like_sf
IPR002784Ribosomal_L14e_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g09780.1Cp4.1LG03g09780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002784Ribosomal protein L14e domainPFAMPF01929Ribosomal_L14ecoord: 45..116
score: 4.1
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 5..93
score: 5.72
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 4..85
score: 4.9
NoneNo IPR availablePANTHERPTHR1112760S RIBOSOMAL PROTEIN L14coord: 2..116
score: 1.9E-84coord: 133..148
score: 1.9
NoneNo IPR availablePANTHERPTHR11127:SF3SUBFAMILY NOT NAMEDcoord: 133..148
score: 1.9E-84coord: 2..116
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g09780Silver-seed gourdcarcpeB0334
Cp4.1LG03g09780Silver-seed gourdcarcpeB1060
Cp4.1LG03g09780Silver-seed gourdcarcpeB1098
Cp4.1LG03g09780Silver-seed gourdcarcpeB1331
Cp4.1LG03g09780Silver-seed gourdcarcpeB1504
Cp4.1LG03g09780Cucumber (Chinese Long) v3cpecucB0746
Cp4.1LG03g09780Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g09780Wax gourdcpewgoB0764
Cp4.1LG03g09780Wax gourdcpewgoB0789
Cp4.1LG03g09780Wax gourdcpewgoB0800
Cp4.1LG03g09780Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g09780Cucurbita pepo (Zucchini)cpecpeB265
Cp4.1LG03g09780Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g09780Cucurbita pepo (Zucchini)cpecpeB478
Cp4.1LG03g09780Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g09780Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g09780Cucumber (Gy14) v1cgycpeB1010
Cp4.1LG03g09780Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g09780Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g09780Cucurbita maxima (Rimu)cmacpeB535
Cp4.1LG03g09780Cucurbita maxima (Rimu)cmacpeB640
Cp4.1LG03g09780Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g09780Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g09780Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g09780Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g09780Cucurbita moschata (Rifu)cmocpeB491
Cp4.1LG03g09780Cucurbita moschata (Rifu)cmocpeB590
Cp4.1LG03g09780Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g09780Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g09780Wild cucumber (PI 183967)cpecpiB598
Cp4.1LG03g09780Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g09780Cucumber (Chinese Long) v2cpecuB596
Cp4.1LG03g09780Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g09780Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g09780Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g09780Bottle gourd (USVL1VR-Ls)cpelsiB508
Cp4.1LG03g09780Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g09780Watermelon (Charleston Gray)cpewcgB561
Cp4.1LG03g09780Watermelon (Charleston Gray)cpewcgB569
Cp4.1LG03g09780Watermelon (97103) v1cpewmB605
Cp4.1LG03g09780Watermelon (97103) v1cpewmB613
Cp4.1LG03g09780Watermelon (97103) v1cpewmB622
Cp4.1LG03g09780Silver-seed gourdcarcpeB0327
Cp4.1LG03g09780Melon (DHL92) v3.5.1cpemeB577
Cp4.1LG03g09780Melon (DHL92) v3.5.1cpemeB578
Cp4.1LG03g09780Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g09780Cucumber (Gy14) v2cgybcpeB231
Cp4.1LG03g09780Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g09780Melon (DHL92) v3.6.1cpemedB684
Cp4.1LG03g09780Melon (DHL92) v3.6.1cpemedB685
Cp4.1LG03g09780Melon (DHL92) v3.6.1cpemedB693