Cp4.1LG03g09180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g09180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSister chromatid cohesion 1 protein 3
LocationCp4.1LG03 : 5638802 .. 5642430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTACTCGCACACGCTGTTGGCTCGAAAGACGCCATTGGGGACTGTGTGGTGTGCTGCTCATTTGCAGCACCGTCTCAACAAGAAAGACTACGAGAAGACTAAAATTCCTGTCGTCGTCGGTCAGTATCTGATTGTTCATTTTGAATATCCGATGCTTTTTTTTCTTGTATTTTCCCAGTTCGATCTGAAGTTCTTTGTTTTTTCAATCAAATTGGAGAAAAATTGTTGGGTTTTCCATTTAGGGTTTCTAAAGTGATTGAAAATCTCAAAGATTCGCCCTGGAGATTTTCCATTTGTATCTTCAAGATGTTGGTTTTCAAGTGCATGTATGAGTTTTTTAATTTTAAGAGTGACTGATATATGATTCTTGTCTGGAATGGATATCTTTTGTAGATGCCATTATGTTTGGTGAAGTACCGCTTGCCCTGCGGACGTCGAGCTACCTTCTGTTAGGTGTTGTGCGGATTTATTCAAAGCAAATCGACTATTTAAAACATGATGTTGATGTTTTAGTGATGGAGTTACGAAAAATGCATACGCAAGCTTCGGCGAAACTCACTTTGCCTGAGAATGCTTATCAGGCACCGTTTCATTCTATCACTTTGCCTGAGACTTTTGATCTTGATGCTCTGGAATTGGACACTGATATTTATTACGATGGGTAATGGAATTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCTGGAGTGGAGATTGAACATCTCCGTGATGTTGAGGGCAATCGGGGGGACGATACCTTGGCAGATTTAATTGCTTCTCCAACAAGGTTCATGCCTTCTCCTAGGCCTTCTGAAGGCTTAGGTTCACCATCAGTAATGATTGGATCTACTGGAATGCTGTCAACACCTGGACAAGCATCAACTGAACCTTCAAGATCCATGTTTGAAACTCCCGGAACAATGGACGAGGGACTGGGTGCAGAAGATATTACACTCTCGGATATTCCGGAACAGAGAAGTCCTGCAGACGAGGTAGGTCTTTCTGTTAATACTATTGCTTCATATTCTTCAGTAAGTTACCACTAGAATTCGATCTTCATTCTTTTTATCAGCAGAAAAGAGGACAGTGCAAGCATGAGTTCAGTGCCCTAAAAAAACTTCACATATTACTGATTTTATTATCAAACGTGAATTCACATATTATGTTATATTACTGCCATAAAAAATGTTTGAGTTAAAGTAGTGTTGATTAAACCATTTAAAAATTTCTCTGAACATTTCTTCATTCTTCAATTCAGATGTGAAAATTGTAAGCGCAGTGAAGTTCTAACTTGTTGAGATATTTATTGTAGGATCTTTATTTCCTGGAAGCAGATAGCTCACCAGCTGGTAGATCAAGTAATGCTGTACTTCCTGTTATTATTCAGTTGTTTCCTTAGTTCTATCTCTTGGGTGCATTATATAACTTGGGATTCCTGTTTTGGTGTTGGGGGTAATGTGCTTCTACAGGGTCTCAGGGAACTCAAGGTGTCGACTCATTGTCCGTGAGAACGAGGTACTTTTCTATCAGTTGCTTTCCGACCCTTTTCATTAATCATAGTGTAATTTAGAAAAATAGTGAGGGAGGCCAAGAGCCACAAAATTGACCAAGTCTACAGAAAGTTGAATGTTTCGAGTACTCTAAATGGCTCGTTATAATTGTCCCTCTTTTACGTTTAATGTAAACAGGGCTGTAGGTCGGTATCTAAGGAGTCTTTCTCCTATAAAATCAATCTCAGATGACTCAACCCAAGAACTCTCTTTGAATGACATTCTAGAAGGAAAAAGAAGAAAGCTAAGCGCACGGATGTTCTACGAGACACTGGTAACTTTTTCAAAACTTTGGAAGATTATTTGCAACTCTCCCCCTTCCCCCACCACATATAGCTTAAAAGTTTGCTTTATTTTATTGACATTAGGTTTTGAAGAGCTATGGACTTATTGATGTACAACAAGATGAACCTTATGGGGACATCCGTTTGAAATTGACTCCAAAGCTTTCTATGGCTCAAATATAGCACTCACTATATATTTGGCTAAGGTGTGCATTGTATTTACTGGTAAGGATCTTACTGCGCCTCCCCTTTTTGTCAATTCTTCTTTTTTCTTCTCTCCATTGATCTGTTTGGTAAGGATCTTGCTGATCTTTAAGAGTGAAACCTTGTTTATGCTGCCTATGCTGAAGCTGAATCTTCATGTAGGTTAGGTTGCAGACGATGTCCGACCTCGAGGTAGTTCTTTATGTAAATTTTCCAAGTTGCAAGAGGCGGAAAGTGCATTTTGCTCATCAGTGTACCAACCAAATTTTGACCCGTGTAGATATGCATGGTTTAGTAGGAAGATGTGTAGTGCAATTATAGTAAGGCTAATCATCTCTATTTTGTAAATTATATCAGAATTAGTACATTTCCCACCTGTAGAATAAGTCTCTTGTTTCGATATGACTTTTTAAGTGCTTAAAAACACTTTTTTTTAAAGCATTGAGAAAGTCTATCCAAGTGGTTTTGTAGATTTTGCAAATTACAGTAAAGACCATGTAAGCTATAGTGAGGTAGCTCAAGTATTTACTACTTGTAGTGAGGATGGAAGATCAGCCTGTTCTACAAAACTTGTATGAACTTTGCCTAATTGTATGCATTCAGATGGGAGCATCTTGTGAGCTCCAAATGAAAA

mRNA sequence

ATGTTTTACTCGCACACGCTGTTGGCTCGAAAGACGCCATTGGGGACTGTGTGGTGTGCTGCTCATTTGCAGCACCGTCTCAACAAGAAAGACTACGAGAAGACTAAAATTCCTGTCGTCGTCGATGCCATTATGTTTGGTGAAGTACCGCTTGCCCTGCGGACGTCGAGCTACCTTCTGTTAGGTGTTGTGCGGATTTATTCAAAGCAAATCGACTATTTAAAACATGATGTTGATGTTTTAGTGATGGAGTTACGAAAAATGCATACGCAAGCTTCGGCGAAACTCACTTTGCCTGAGAATGCTTATCAGGCACCGTTTCATTCTATCACTTTGCCTGAGACTTTTGATCTTGATGCTCTGGAATTGGACACTGATATTTATTACGATGGGCCTTCTGAAGGCTTAGGTTCACCATCAGTAATGATTGGATCTACTGGAATGCTGTCAACACCTGGACAAGCATCAACTGAACCTTCAAGATCCATGTTTGAAACTCCCGGAACAATGGACGAGGGACTGGGTGCAGAAGATATTACACTCTCGGATATTCCGGAACAGAGAAGTCCTGCAGACGAGGATCTTTATTTCCTGGAAGCAGATAGCTCACCAGCTGGTAGATCAAGGTCTCAGGGAACTCAAGGTGTCGACTCATTGTCCGTGAGAACGAGGGCTGTAGGTCGGTATCTAAGGAGTCTTTCTCCTATAAAATCAATCTCAGATGACTCAACCCAAGAACTCTCTTTGAATGACATTCTAGAAGGAAAAAGAAGAAAGCTAAGCGCACGGATGTTCTACGAGACACTGGTTTTGAAGAGCTATGGACTTATTGATGTACAACAAGATGAACCTTATGGGGACATCCGTTTGAAATTGACTCCAAAGCTTTCTATGGCTCAAATATAGCACTCACTATATATTTGGCTAAGGTGTGCATTGTATTTACTGGTTAGGTTGCAGACGATGTCCGACCTCGAGGTAGTTCTTTATGTAAATTTTCCAAGTTGCAAGAGGCGGAAAGTGCATTTTGCTCATCAGTGTACCAACCAAATTTTGACCCGTGTAGATATGCATGGTTTAGTAGGAAGATGTGTAGTGCAATTATAGTAAGGCTAATCATCTCTATTTTGTAAATTATATCAGAATTAGTACATTTCCCACCTGTAGAATAAGTCTCTTGTTTCGATATGACTTTTTAAGTGCTTAAAAACACTTTTTTTTAAAGCATTGAGAAAGTCTATCCAAGTGGTTTTGTAGATTTTGCAAATTACAGTAAAGACCATGTAAGCTATAGTGAGGTAGCTCAAGTATTTACTACTTGTAGTGAGGATGGAAGATCAGCCTGTTCTACAAAACTTGTATGAACTTTGCCTAATTGTATGCATTCAGATGGGAGCATCTTGTGAGCTCCAAATGAAAA

Coding sequence (CDS)

ATGTTTTACTCGCACACGCTGTTGGCTCGAAAGACGCCATTGGGGACTGTGTGGTGTGCTGCTCATTTGCAGCACCGTCTCAACAAGAAAGACTACGAGAAGACTAAAATTCCTGTCGTCGTCGATGCCATTATGTTTGGTGAAGTACCGCTTGCCCTGCGGACGTCGAGCTACCTTCTGTTAGGTGTTGTGCGGATTTATTCAAAGCAAATCGACTATTTAAAACATGATGTTGATGTTTTAGTGATGGAGTTACGAAAAATGCATACGCAAGCTTCGGCGAAACTCACTTTGCCTGAGAATGCTTATCAGGCACCGTTTCATTCTATCACTTTGCCTGAGACTTTTGATCTTGATGCTCTGGAATTGGACACTGATATTTATTACGATGGGCCTTCTGAAGGCTTAGGTTCACCATCAGTAATGATTGGATCTACTGGAATGCTGTCAACACCTGGACAAGCATCAACTGAACCTTCAAGATCCATGTTTGAAACTCCCGGAACAATGGACGAGGGACTGGGTGCAGAAGATATTACACTCTCGGATATTCCGGAACAGAGAAGTCCTGCAGACGAGGATCTTTATTTCCTGGAAGCAGATAGCTCACCAGCTGGTAGATCAAGGTCTCAGGGAACTCAAGGTGTCGACTCATTGTCCGTGAGAACGAGGGCTGTAGGTCGGTATCTAAGGAGTCTTTCTCCTATAAAATCAATCTCAGATGACTCAACCCAAGAACTCTCTTTGAATGACATTCTAGAAGGAAAAAGAAGAAAGCTAAGCGCACGGATGTTCTACGAGACACTGGTTTTGAAGAGCTATGGACTTATTGATGTACAACAAGATGAACCTTATGGGGACATCCGTTTGAAATTGACTCCAAAGCTTTCTATGGCTCAAATATAG

Protein sequence

MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLLLGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDALELDTDIYYDGPSEGLGSPSVMIGSTGMLSTPGQASTEPSRSMFETPGTMDEGLGAEDITLSDIPEQRSPADEDLYFLEADSSPAGRSRSQGTQGVDSLSVRTRAVGRYLRSLSPIKSISDDSTQELSLNDILEGKRRKLSARMFYETLVLKSYGLIDVQQDEPYGDIRLKLTPKLSMAQI
Homology
[Close]
BLAST of Cp4.1LG03g09180 vs. Swiss-Prot
Match: SCC13_ARATH (Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-33
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARK PLGTVWCAAH+  RL K  Y    IP  VD IMF EVPLALRTSS+LL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           +GVVRIYSK++DYL +D ++L   + K     S ++ LPE+A QAP  S+TLP+  +LD 
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAF--VSTQVNLPEDARQAPPESVTLPQALNLDE 120

Query: 121 LELDTD 127
            +L+ D
Sbjct: 121 FDLEDD 124

[Close]
BLAST of Cp4.1LG03g09180 vs. Swiss-Prot
Match: SSC14_ARATH (Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS  +LA+K PLGT+W AAHL+ +L K     T I V VD+I+F E P+ALR SS+LL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYS++++YL  D    ++++++     SA + LP     AP+HSITLPETFDLD 
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAF--RSAAVDLPPEESTAPYHSITLPETFDLDD 120

Query: 121 LELDTDIYYDG 132
            EL  +  + G
Sbjct: 121 FELPDNEIFQG 129

[Close]
BLAST of Cp4.1LG03g09180 vs. Swiss-Prot
Match: RD21L_AILME (Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-17
Identity = 42/116 (36.21%), Postives = 75/116 (64.66%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFY+H L++++ PL  +W AAH + +L K    +  + + ++ I+  +V +ALRTS +LL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETF 117
           LGVVRIY+++  YL  D +  +++++   T     + LP+  ++A +++ITLPE F
Sbjct: 61  LGVVRIYNRKAKYLLADCNEALLKMKM--TFRPGLVDLPKENFEAAYNAITLPEEF 114

[Close]
BLAST of Cp4.1LG03g09180 vs. Swiss-Prot
Match: SCC12_ARATH (Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-16
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEV-PLALRTSSYL 60
           MFYSH L++RK PLG +W AA+   +L K   + T IP  VD I+  E+  L  R  +YL
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 61  LLGVVRIYSKQIDYLKHDVDVLVMELR----KMHTQASAKLTLPENAYQAPFHSITLPET 120
           LLGVVRIYSK++D+L  D +  ++ ++    K   +    ++LP +       SI LPE 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPAS---IECFSIALPER 120

Query: 121 FDLDALEL 124
           F+LDA +L
Sbjct: 121 FELDAFDL 125

[Close]
BLAST of Cp4.1LG03g09180 vs. Swiss-Prot
Match: RD21L_HUMAN (Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-16
Identity = 44/125 (35.20%), Postives = 77/125 (61.60%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFY+H L++++ PL  +W AAH + +L K    +  + + ++ I+  +V +ALRTS +LL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETF-DLD 120
           LGVVRIY+++  YL  D     ++++   T     + LP+  ++A +++ITLPE F D D
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKM--TFCPGLVDLPKENFEASYNAITLPEEFHDFD 120

Query: 121 ALELD 125
              ++
Sbjct: 121 TQNMN 123

[Close]
BLAST of Cp4.1LG03g09180 vs. TrEMBL
Match: A0A0A0L109_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G153290 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.5e-61
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKI VVVDAIMFGEVPLALRTSSYLL
Sbjct: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKISVVVDAIMFGEVPLALRTSSYLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSKQIDYLKHDVDVLVMELRKMH  ASA LTLP++ YQAPF+SITLP TFDLDA
Sbjct: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSVYQAPFYSITLPATFDLDA 120

Query: 121 LELDTDIYYDG 132
           LELD+DIY+DG
Sbjct: 121 LELDSDIYHDG 131

[Close]
BLAST of Cp4.1LG03g09180 vs. TrEMBL
Match: D7T2W2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01440 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.4e-39
Identity = 82/131 (62.60%), Postives = 102/131 (77.86%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHT LARK PLGTVWCAAHLQH+L K  Y  T IP  V+ IMF EVP+ALR S +LL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSK++DYL  D +++++ +RK    +S ++ LPE+A  APFHSITLP+TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLYQDCNIVLIGIRKAF--SSIEVNLPEDASHAPFHSITLPDTFELDA 120

Query: 121 LELDTDIYYDG 132
           L+LD D Y +G
Sbjct: 121 LDLDADFYVEG 129

[Close]
BLAST of Cp4.1LG03g09180 vs. TrEMBL
Match: M5XNA8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019289mg PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 85/131 (64.89%), Postives = 99/131 (75.57%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQ RL K  Y  T IP  VD IMF +VP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQSRLKKSHYTSTDIPSTVDRIMFPDVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           +GVVRIYSK++DYL  D +V++  LRK    AS  L LPENA QAP  SITLP+TFDLDA
Sbjct: 61  VGVVRIYSKKVDYLYQDCNVVLTSLRKAF--ASIDLNLPENARQAPVQSITLPDTFDLDA 120

Query: 121 LELDTDIYYDG 132
           L+LDTD++ +G
Sbjct: 121 LDLDTDLFCEG 129

[Close]
BLAST of Cp4.1LG03g09180 vs. TrEMBL
Match: A0A061DVE5_THECC (Cohesin subunit rad21, putative isoform 2 OS=Theobroma cacao GN=TCM_005931 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 109/249 (43.78%), Postives = 151/249 (60.64%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y    IP  VD IMF EVP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTAADIPSTVDLIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSK++DYL HD +++++ LRK+   AS ++ LPE+A QAPF +ITLP+TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLFHDCNIVLIGLRKVF--ASVQVDLPEDARQAPFQAITLPQTFNLDA 120

Query: 121 LELDTDIYYDGPSEGLGSPSVMIGSTGMLSTPGQASTEPSRSMFETPGTMDEGLGAEDIT 180
           +ELD D+  +G S+   S    I  T  +   G    +P  ++     T DE +   D +
Sbjct: 121 MELDGDMCTEGSSDNHLSNQEDITLTDQIPIGG----DPYVAI-----TFDEDI-MRDAS 180

Query: 181 LSDIPEQRS--PADEDLYFLEADSSPAGRSRSQGTQ-GVDSLSVRTRAVGRYLRSLSPIK 240
           L ++ ++      ++ L+    D     +   Q  Q  V S S   +  GR  +S   ++
Sbjct: 181 LPEVFQKSGSIQINDKLHGPPEDEHVRSQDPGQHNQIEVPSASAAFQDPGRSNKS-QVLE 236

Query: 241 SISDDSTQE 247
           S+S+DS+Q+
Sbjct: 241 SMSNDSSQD 236

[Close]
BLAST of Cp4.1LG03g09180 vs. TrEMBL
Match: A0A061E3C1_THECC (Cohesin subunit rad21, putative isoform 1 OS=Theobroma cacao GN=TCM_005931 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 109/249 (43.78%), Postives = 151/249 (60.64%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y    IP  VD IMF EVP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTAADIPSTVDLIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSK++DYL HD +++++ LRK+   AS ++ LPE+A QAPF +ITLP+TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLFHDCNIVLIGLRKVF--ASVQVDLPEDARQAPFQAITLPQTFNLDA 120

Query: 121 LELDTDIYYDGPSEGLGSPSVMIGSTGMLSTPGQASTEPSRSMFETPGTMDEGLGAEDIT 180
           +ELD D+  +G S+   S    I  T  +   G    +P  ++     T DE +   D +
Sbjct: 121 MELDGDMCTEGSSDNHLSNQEDITLTDQIPIGG----DPYVAI-----TFDEDI-MRDAS 180

Query: 181 LSDIPEQRS--PADEDLYFLEADSSPAGRSRSQGTQ-GVDSLSVRTRAVGRYLRSLSPIK 240
           L ++ ++      ++ L+    D     +   Q  Q  V S S   +  GR  +S   ++
Sbjct: 181 LPEVFQKSGSIQINDKLHGPPEDEHVRSQDPGQHNQIEVPSASAAFQDPGRSNKS-QVLE 236

Query: 241 SISDDSTQE 247
           S+S+DS+Q+
Sbjct: 241 SMSNDSSQD 236

[Close]
BLAST of Cp4.1LG03g09180 vs. TAIR10
Match: AT3G59550.1 (AT3G59550.1 Rad21/Rec8-like family protein)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-34
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARK PLGTVWCAAH+  RL K  Y    IP  VD IMF EVPLALRTSS+LL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           +GVVRIYSK++DYL +D ++L   + K     S ++ LPE+A QAP  S+TLP+  +LD 
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAF--VSTQVNLPEDARQAPPESVTLPQALNLDE 120

Query: 121 LELDTD 127
            +L+ D
Sbjct: 121 FDLEDD 124

[Close]
BLAST of Cp4.1LG03g09180 vs. TAIR10
Match: AT5G16270.1 (AT5G16270.1 sister chromatid cohesion 1 protein 4)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-30
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS  +LA+K PLGT+W AAHL+ +L K     T I V VD+I+F E P+ALR SS+LL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYS++++YL  D    ++++++     SA + LP     AP+HSITLPETFDLD 
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAF--RSAAVDLPPEESTAPYHSITLPETFDLDD 120

Query: 121 LELDTDIYYDG 132
            EL  +  + G
Sbjct: 121 FELPDNEIFQG 129

[Close]
BLAST of Cp4.1LG03g09180 vs. TAIR10
Match: AT5G40840.2 (AT5G40840.2 Rad21/Rec8-like family protein)

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-18
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEV-PLALRTSSYL 60
           MFYSH L++RK PLG +W AA+   +L K   + T IP  VD I+  E+  L  R  +YL
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 61  LLGVVRIYSKQIDYLKHDVDVLVMELR----KMHTQASAKLTLPENAYQAPFHSITLPET 120
           LLGVVRIYSK++D+L  D +  ++ ++    K   +    ++LP +       SI LPE 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPAS---IECFSIALPER 120

Query: 121 FDLDALEL 124
           F+LDA +L
Sbjct: 121 FELDAFDL 125

[Close]
BLAST of Cp4.1LG03g09180 vs. TAIR10
Match: AT5G05490.1 (AT5G05490.1 Rad21/Rec8-like family protein)

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-13
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 6   TLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLLLGVVR 65
           TLLARK PLG +W AA L  ++N+K  +K  I  + + I+   VP+ALR S  L+ GVV 
Sbjct: 16  TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVI 75

Query: 66  IYSKQIDYLKHDVDVLVMELRKMHTQASA--KLTLPENAYQAPFHSITLPETFDLD 120
           +Y +++  L  DV+  ++E+       S      LP+    A   ++TLPE  + D
Sbjct: 76  VYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEAD 131

[Close]
BLAST of Cp4.1LG03g09180 vs. NCBI nr
Match: gi|778692207|ref|XP_011653424.1| (PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 5.0e-61
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKI VVVDAIMFGEVPLALRTSSYLL
Sbjct: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKISVVVDAIMFGEVPLALRTSSYLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSKQIDYLKHDVDVLVMELRKMH  ASA LTLP++ YQAPF+SITLP TFDLDA
Sbjct: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSVYQAPFYSITLPATFDLDA 120

Query: 121 LELDTDIYYDG 132
           LELD+DIY+DG
Sbjct: 121 LELDSDIYHDG 131

[Close]
BLAST of Cp4.1LG03g09180 vs. NCBI nr
Match: gi|659121743|ref|XP_008460792.1| (PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 6.5e-61
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL
Sbjct: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSKQIDYLKHDVDVLVMELRKMH  ASA LTLP++AYQAPF+SIT P TFDLDA
Sbjct: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120

Query: 121 LELDTDIYYDG 132
           LELD+DI +DG
Sbjct: 121 LELDSDINHDG 131

[Close]
BLAST of Cp4.1LG03g09180 vs. NCBI nr
Match: gi|297736205|emb|CBI24843.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 169.5 bits (428), Expect = 9.1e-39
Identity = 82/131 (62.60%), Postives = 102/131 (77.86%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHT LARK PLGTVWCAAHLQH+L K  Y  T IP  V+ IMF EVP+ALR S +LL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSK++DYL  D +++++ +RK    +S ++ LPE+A  APFHSITLP+TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLYQDCNIVLIGIRKAF--SSIEVNLPEDASHAPFHSITLPDTFELDA 120

Query: 121 LELDTDIYYDG 132
           L+LD D Y +G
Sbjct: 121 LDLDADFYVEG 129

[Close]
BLAST of Cp4.1LG03g09180 vs. NCBI nr
Match: gi|731414864|ref|XP_010659321.1| (PREDICTED: sister chromatid cohesion 1 protein 3 [Vitis vinifera])

HSP 1 Score: 169.5 bits (428), Expect = 9.1e-39
Identity = 82/131 (62.60%), Postives = 102/131 (77.86%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHT LARK PLGTVWCAAHLQH+L K  Y  T IP  V+ IMF EVP+ALR S +LL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           LGVVRIYSK++DYL  D +++++ +RK    +S ++ LPE+A  APFHSITLP+TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLYQDCNIVLIGIRKAF--SSIEVNLPEDASHAPFHSITLPDTFELDA 120

Query: 121 LELDTDIYYDG 132
           L+LD D Y +G
Sbjct: 121 LDLDADFYVEG 129

[Close]
BLAST of Cp4.1LG03g09180 vs. NCBI nr
Match: gi|596028090|ref|XP_007219331.1| (hypothetical protein PRUPE_ppa019289mg, partial [Prunus persica])

HSP 1 Score: 166.8 bits (421), Expect = 5.9e-38
Identity = 85/131 (64.89%), Postives = 99/131 (75.57%), Query Frame = 1 

Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQ RL K  Y  T IP  VD IMF +VP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQSRLKKSHYTSTDIPSTVDRIMFPDVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHTQASAKLTLPENAYQAPFHSITLPETFDLDA 120
           +GVVRIYSK++DYL  D +V++  LRK    AS  L LPENA QAP  SITLP+TFDLDA
Sbjct: 61  VGVVRIYSKKVDYLYQDCNVVLTSLRKAF--ASIDLNLPENARQAPVQSITLPDTFDLDA 120

Query: 121 LELDTDIYYDG 132
           L+LDTD++ +G
Sbjct: 121 LDLDTDLFCEG 129

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g09180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SCC13_ARATH5.7e-3358.73Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2[more]
SSC14_ARATH1.5e-2850.38Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1[more]
RD21L_AILME7.5e-1736.21Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuc... [more]
SCC12_ARATH1.3e-1641.41Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2[more]
RD21L_HUMAN1.7e-1635.20Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21... [more]
BLAST of Cp4.1LG03g09180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L109_CUCSA3.5e-6191.60Uncharacterized protein OS=Cucumis sativus GN=Csa_4G153290 PE=4 SV=1[more]
D7T2W2_VITVI6.4e-3962.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01440 PE=4 SV=... [more]
M5XNA8_PRUPE4.1e-3864.89Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019289mg PE=4 S... [more]
A0A061DVE5_THECC2.0e-3743.78Cohesin subunit rad21, putative isoform 2 OS=Theobroma cacao GN=TCM_005931 PE=4 ... [more]
A0A061E3C1_THECC2.0e-3743.78Cohesin subunit rad21, putative isoform 1 OS=Theobroma cacao GN=TCM_005931 PE=4 ... [more]
BLAST of Cp4.1LG03g09180 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59550.13.2e-3458.73 Rad21/Rec8-like family protein[more]
AT5G16270.18.2e-3050.38 sister chromatid cohesion 1 protein 4[more]
AT5G40840.27.2e-1841.41 Rad21/Rec8-like family protein[more]
AT5G05490.15.4e-1336.21 Rad21/Rec8-like family protein[more]
BLAST of Cp4.1LG03g09180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778692207|ref|XP_011653424.1|5.0e-6191.60PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis sativus][more]
gi|659121743|ref|XP_008460792.1|6.5e-6191.60PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis melo][more]
gi|297736205|emb|CBI24843.3|9.1e-3962.60unnamed protein product [Vitis vinifera][more]
gi|731414864|ref|XP_010659321.1|9.1e-3962.60PREDICTED: sister chromatid cohesion 1 protein 3 [Vitis vinifera][more]
gi|596028090|ref|XP_007219331.1|5.9e-3864.89hypothetical protein PRUPE_ppa019289mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0000228nuclear chromosome
Vocabulary: INTERPRO
TermDefinition
IPR023093ScpA-like_C
IPR011991Winged helix-turn-helix DNA-binding domain
IPR006910Rad21_Rec8_N
IPR006909Rad21/Rec8_C_eu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048856 anatomical structure development
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0048229 gametophyte development
biological_process GO:1903047 mitotic cell cycle process
biological_process GO:0006996 organelle organization
biological_process GO:0050794 regulation of cellular process
biological_process GO:0032501 multicellular organismal process
biological_process GO:0009987 cellular process
biological_process GO:0044699 single-organism process
biological_process GO:0008150 biological_process
cellular_component GO:0000228 nuclear chromosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g09180.1Cp4.1LG03g09180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006909Rad21/Rec8-like protein, C-terminal, eukaryoticPFAMPF04824Rad21_Rec8coord: 245..296
score: 2.2
IPR006910Rad21/Rec8-like protein, N-terminalPFAMPF04825Rad21_Rec8_Ncoord: 1..102
score: 8.7
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 223..296
score: 1.6
IPR023093Rad21/Rec8-like protein, C-terminalGENE3DG3DSA:1.10.10.580coord: 222..296
score: 2.0
NoneNo IPR availablePANTHERPTHR12585SCC1 / RAD21 FAMILY MEMBERcoord: 2..128
score: 1.1
NoneNo IPR availablePANTHERPTHR12585:SF36SISTER CHROMATID COHESION 1 PROTEIN 3coord: 2..128
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g09180CmaCh14G010230Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g09180CmoCh14G010410Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g09180Carg11238Silver-seed gourdcarcpeB1147
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g09180Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g09180Wax gourdcpewgoB0742
Cp4.1LG03g09180Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g09180Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g09180Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g09180Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g09180Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g09180Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g09180Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g09180Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g09180Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g09180Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g09180Watermelon (97103) v1cpewmB595
Cp4.1LG03g09180Melon (DHL92) v3.5.1cpemeB566
Cp4.1LG03g09180Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g09180Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g09180Silver-seed gourdcarcpeB0634
Cp4.1LG03g09180Silver-seed gourdcarcpeB1073