Cp4.1LG03g08980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g08980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNegative regulator of sporulation MDS3
LocationCp4.1LG03 : 5740112 .. 5741317 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTTGGCGTCAGATTATTTTTCCGGTACGGCGTGTTTGGCTCGCCGTCTATGGCCGTCTTAAAGCTCGCAAAAATGGTCAGTTTTTTTGTTCCCTTTTTGCCCTCCTCTTCGTCCGTACACTTTTTTTTTTATTATCGCATAATTTTTAATTTTAGAATCGGATTTTTTTTAATTATAGTAATAATTAATGAAATTTATTGCATAATTATATATATATGAGGGAAAAAATGGATTAATTTAATTGAGTTTTAAGGACATTCAAAACAAAATAAAAATTTGATAAATTTTAATTTTCTTATTTATCAAAAAAATGGTGGGTTATTATTATTATTATTATTATTTATTTATGGTAATTAAAATTAAGAAAAATAAGGGATTTAATTAATTAATTAACTTTATAAAGGTGGATTGGATAAAGATGAGATAAAGCAATTTTTTATGCTTCCATGTCACATAGCATTATTAATGGCTTGAAAAAAGAGGAAATTTTGTGTCTTTTTTTTTTTTTTTTTCAAACAAAGATGCTTCCAACAAGGAATCAGATTCATATGGCTTACTCTTTTGTACCACTTCTTATTCTTATTGTTGCACGTCGAAATTACACTATTATTGAATTTTTAATAGTTCGACAGATGAAGGACTTGTGAAACTTTACGACGATGTAGAAACGTGTGGCTATCAAGATGTAAAGGTTATGTGGGAAATATTGAAGCAATCAGAAGCTGAGTTGATCAATCATCACCACCAGACAAGGCGTAAACATAAGCCGTTTTGGAAGGATTTTTTGTGGTCTAACTCTAACTCTGACTCAACTACTAGTACAACTAAAATGATGCCTTTTCCGACTTTTAGCCCCATTTCGTAGGGTGATAAGTATAAGGGTCTCTAGTCTTAAATTTCCTCGAACAATATAAAAATATAGTGTAAATAGAAATAATAATTGCATCGAAAAGGTTTCTAAACAAAGAAAAAAAAGCTCAAATTAATACTTGGGCCAATCATCTTCACTTTTGTTAAAAGGTTCTTTTTTCTTCCTTGTGTTGGAGTTTTCAATATTTGCTTCAAAGGACGATCTTACATGAGCCAAGATAGTGAAATATTGGAGTTAGAGATAACCACGGGATAGAATCAAAGATCATTGTTTCTGTTACGATATATTATAAGATAAGAATGAGATATGAAGTATTTATATTATATGA

mRNA sequence

ATGGGTTTTTGGCGTCAGATTATTTTTCCGGTACGGCGTGTTTGGCTCGCCGTCTATGGCCGTCTTAAAGCTCGCAAAAATGGTCATTCGACAGATGAAGGACTTGTGAAACTTTACGACGATGTAGAAACGTGTGGCTATCAAGATGTAAAGGTTATGTGGGAAATATTGAAGCAATCAGAAGCTGAGTTGATCAATCATCACCACCAGACAAGGCGTAAACATAAGCCGTTTTGGAAGGATTTTTTGTGGTCTAACTCTAACTCTGACTCAACTACTAGTACAACTAAAATGATGCCTTTTCCGACTTTTAGCCCCATTTCGTAGGGTGATAAGTATAAGGGTCTCTAGTCTTAAATTTCCTCGAACAATATAAAAATATAGTGTAAATAGAAATAATAATTGCATCGAAAAGGTTTCTAAACAAAGAAAAAAAAGCTCAAATTAATACTTGGGCCAATCATCTTCACTTTTGTTAAAAGGTTCTTTTTTCTTCCTTGTGTTGGAGTTTTCAATATTTGCTTCAAAGGACGATCTTACATGAGCCAAGATAGTGAAATATTGGAGTTAGAGATAACCACGGGATAGAATCAAAGATCATTGTTTCTGTTACGATATATTATAAGATAAGAATGAGATATGAAGTATTTATATTATATGA

Coding sequence (CDS)

ATGGGTTTTTGGCGTCAGATTATTTTTCCGGTACGGCGTGTTTGGCTCGCCGTCTATGGCCGTCTTAAAGCTCGCAAAAATGGTCATTCGACAGATGAAGGACTTGTGAAACTTTACGACGATGTAGAAACGTGTGGCTATCAAGATGTAAAGGTTATGTGGGAAATATTGAAGCAATCAGAAGCTGAGTTGATCAATCATCACCACCAGACAAGGCGTAAACATAAGCCGTTTTGGAAGGATTTTTTGTGGTCTAACTCTAACTCTGACTCAACTACTAGTACAACTAAAATGATGCCTTTTCCGACTTTTAGCCCCATTTCGTAG

Protein sequence

MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQSEAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTSTTKMMPFPTFSPIS
Homology
[Close]
BLAST of Cp4.1LG03g08980 vs. TrEMBL
Match: A0A0A0LD54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710210 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
           MGFW Q+IFPVRRVWLAVYGRLKAR+N    DEGL+KL+DDVETCGYQDVKVMWEIL++S
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRN----DEGLLKLHDDVETCGYQDVKVMWEILRRS 60

Query: 61  EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTSTTKMMPFPTFSPIS 109
           EAELIN HHQ RRKHKPFWK  +WSN NS+S+T+  KM  FPTFSPIS
Sbjct: 61  EAELIN-HHQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

[Close]
BLAST of Cp4.1LG03g08980 vs. TrEMBL
Match: A0A0B0MKL4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_16795 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 53/95 (55.79%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
          M FW ++IFPVRR W  V   LKARKNG     GL+KL DD++TCGYQDV+VMWE+L++S
Sbjct: 1  MDFWHKMIFPVRRFWFTVSSPLKARKNG----AGLLKLRDDIQTCGYQDVQVMWEMLRRS 60

Query: 61 EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTST 96
          E E  +HHH  +RK +PFW+ F+WS+SN+ S++++
Sbjct: 61 ETE-HHHHHHPKRKQRPFWRVFVWSSSNNTSSSTS 90

[Close]
BLAST of Cp4.1LG03g08980 vs. TrEMBL
Match: V7C0D7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G184200g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 1 

Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
           M  WR IIFPVRRVWLA+  RLKARKNG     GL+KL DDV+TCGY+DV+VMWE+L+++
Sbjct: 41  MDVWRNIIFPVRRVWLALSARLKARKNG----AGLLKLQDDVQTCGYEDVQVMWEMLQRT 100

Query: 61  EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTS 95
           E++++ +HH  +RK  PFW+ F+WSN +  S+ S
Sbjct: 101 ESDVVENHH--KRKQLPFWRIFVWSNHSEVSSES 128

[Close]
BLAST of Cp4.1LG03g08980 vs. TrEMBL
Match: A0A0D2RHE4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G053600 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
          M FW ++IFPVRR W  V   LKARKNG     GL+KL DD++TCGYQDV+VMWE+L++S
Sbjct: 1  MDFWHKMIFPVRRFWFTVSSPLKARKNG----AGLLKLRDDIQTCGYQDVQVMWEMLRRS 60

Query: 61 EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTS 95
          E E  +HH   +RK +PFW+ F+WS+SN+ S+TS
Sbjct: 61 ETE--HHHPHPKRKQRPFWRVFVWSSSNNTSSTS 88

[Close]
BLAST of Cp4.1LG03g08980 vs. TrEMBL
Match: A0A0A0K8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430780 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 53/95 (55.79%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
          M  W ++IFPVRRVWLAV  R++ARK G     GL+KL+DDVETCGY+DVKVMWE+L++S
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTG----AGLLKLHDDVETCGYEDVKVMWEMLRRS 60

Query: 61 EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTST 96
          E+EL++  HQ +RK +PFW+  +WSN  + +++ T
Sbjct: 61 ESELVS--HQPKRKQRPFWRVSVWSNHAAAASSYT 89

[Close]
BLAST of Cp4.1LG03g08980 vs. TAIR10
Match: AT5G43150.1 (AT5G43150.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 1 

Query: 3  FWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEIL-KQSE 62
          +W  + FP RR+W     R+  R   HS   GL++L  DV +C Y+D+ +MW +L K  +
Sbjct: 9  WWNTMAFPTRRIWNRFTVRVGFR---HS---GLLRLEHDVSSCEYEDIHIMWNLLHKNED 68

Query: 63 AELINHHHQTRRKHKPFW 80
             +    Q +++ KP W
Sbjct: 69 LTRVPIQQQQQQRKKPCW 80

[Close]
BLAST of Cp4.1LG03g08980 vs. NCBI nr
Match: gi|449439747|ref|XP_004137647.1| (PREDICTED: uncharacterized protein LOC101215661 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
           MGFW Q+IFPVRRVWLAVYGRLKAR+N    DEGL+KL+DDVETCGYQDVKVMWEIL++S
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRN----DEGLLKLHDDVETCGYQDVKVMWEILRRS 60

Query: 61  EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTSTTKMMPFPTFSPIS 109
           EAELIN HHQ RRKHKPFWK  +WSN NS+S+T+  KM  FPTFSPIS
Sbjct: 61  EAELIN-HHQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

[Close]
BLAST of Cp4.1LG03g08980 vs. NCBI nr
Match: gi|764605525|ref|XP_011466987.1| (PREDICTED: uncharacterized protein LOC101292722 [Fragaria vesca subsp. vesca])

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-25
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
          M FW +++FPVRRVWLAV  R+KARKNG     GL+KL+DDV+TCGYQDV+VMW++L + 
Sbjct: 1  MEFWDKMVFPVRRVWLAVSTRVKARKNG----AGLLKLHDDVQTCGYQDVQVMWQMLSR- 60

Query: 61 EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTS 95
          EAELINHHH  R+  +PFW+ F WSN++S   +S
Sbjct: 61 EAELINHHHAKRKHRRPFWRVFEWSNNHSTKASS 89

[Close]
BLAST of Cp4.1LG03g08980 vs. NCBI nr
Match: gi|728811093|gb|KHG00009.1| (hypothetical protein F383_16795 [Gossypium arboreum])

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-23
Identity = 53/95 (55.79%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
          M FW ++IFPVRR W  V   LKARKNG     GL+KL DD++TCGYQDV+VMWE+L++S
Sbjct: 1  MDFWHKMIFPVRRFWFTVSSPLKARKNG----AGLLKLRDDIQTCGYQDVQVMWEMLRRS 60

Query: 61 EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTST 96
          E E  +HHH  +RK +PFW+ F+WS+SN+ S++++
Sbjct: 61 ETE-HHHHHHPKRKQRPFWRVFVWSSSNNTSSSTS 90

[Close]
BLAST of Cp4.1LG03g08980 vs. NCBI nr
Match: gi|593700811|ref|XP_007150829.1| (hypothetical protein PHAVU_005G184200g [Phaseolus vulgaris])

HSP 1 Score: 115.9 bits (289), Expect = 4.3e-23
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 1 

Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
           M  WR IIFPVRRVWLA+  RLKARKNG     GL+KL DDV+TCGY+DV+VMWE+L+++
Sbjct: 41  MDVWRNIIFPVRRVWLALSARLKARKNG----AGLLKLQDDVQTCGYEDVQVMWEMLQRT 100

Query: 61  EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTS 95
           E++++ +HH  +RK  PFW+ F+WSN +  S+ S
Sbjct: 101 ESDVVENHH--KRKQLPFWRIFVWSNHSEVSSES 128

[Close]
BLAST of Cp4.1LG03g08980 vs. NCBI nr
Match: gi|823248704|ref|XP_012457009.1| (PREDICTED: uncharacterized protein LOC105778008 [Gossypium raimondii])

HSP 1 Score: 115.9 bits (289), Expect = 4.3e-23
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNGHSTDEGLVKLYDDVETCGYQDVKVMWEILKQS 60
          M FW ++IFPVRR W  V   LKARKNG     GL+KL DD++TCGYQDV+VMWE+L++S
Sbjct: 1  MDFWHKMIFPVRRFWFTVSSPLKARKNG----AGLLKLRDDIQTCGYQDVQVMWEMLRRS 60

Query: 61 EAELINHHHQTRRKHKPFWKDFLWSNSNSDSTTS 95
          E E  +HH   +RK +PFW+ F+WS+SN+ S+TS
Sbjct: 61 ETE--HHHPHPKRKQRPFWRVFVWSSSNNTSSTS 88

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g08980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g08980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD54_CUCSA1.6e-4077.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710210 PE=4 SV=1[more]
A0A0B0MKL4_GOSAR1.8e-2355.79Uncharacterized protein OS=Gossypium arboreum GN=F383_16795 PE=4 SV=1[more]
V7C0D7_PHAVU3.0e-2357.45Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G184200g PE=4 SV=1[more]
A0A0D2RHE4_GOSRA3.0e-2357.45Uncharacterized protein OS=Gossypium raimondii GN=B456_011G053600 PE=4 SV=1[more]
A0A0A0K8I7_CUCSA1.5e-2255.79Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430780 PE=4 SV=1[more]
BLAST of Cp4.1LG03g08980 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43150.16.0e-0733.33 unknown protein[more]
BLAST of Cp4.1LG03g08980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439747|ref|XP_004137647.1|2.3e-4077.78PREDICTED: uncharacterized protein LOC101215661 [Cucumis sativus][more]
gi|764605525|ref|XP_011466987.1|6.0e-2560.64PREDICTED: uncharacterized protein LOC101292722 [Fragaria vesca subsp. vesca][more]
gi|728811093|gb|KHG00009.1|2.5e-2355.79hypothetical protein F383_16795 [Gossypium arboreum][more]
gi|593700811|ref|XP_007150829.1|4.3e-2357.45hypothetical protein PHAVU_005G184200g [Phaseolus vulgaris][more]
gi|823248704|ref|XP_012457009.1|4.3e-2357.45PREDICTED: uncharacterized protein LOC105778008 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006506 GPI anchor biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08980.1Cp4.1LG03g08980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33181FAMILY NOT NAMEDcoord: 1..96
score: 1.1
NoneNo IPR availablePANTHERPTHR33181:SF4SUBFAMILY NOT NAMEDcoord: 1..96
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g08980Cucsa.177410Cucumber (Gy14) v1cgycpeB0489
Cp4.1LG03g08980CmaCh14G010400Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g08980CmaCh17G009150Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g08980CmaCh01G001990Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g08980CmoCh01G002060Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g08980CmoCh14G010580Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g08980Csa3G710210Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g08980ClCG10G012800Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g08980CSPI03G30190Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g08980Lsi03G012460Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g08980CsaV3_3G032640Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g08980Bhi11G001235Wax gourdcpewgoB0742
Cp4.1LG03g08980CsGy3G027990Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g08980Carg11253Silver-seed gourdcarcpeB1147
Cp4.1LG03g08980Carg13488Silver-seed gourdcarcpeB0634
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g08980Cp4.1LG12g07030Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g08980Cp4.1LG17g08510Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g08980Cp4.1LG02g15340Cucurbita pepo (Zucchini)cpecpeB449
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g08980Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g08980Silver-seed gourdcarcpeB0286
Cp4.1LG03g08980Watermelon (97103) v1cpewmB595
Cp4.1LG03g08980Melon (DHL92) v3.5.1cpemeB566