Cp4.1LG03g08670 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g08670
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 2639538 .. 2642929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATGGGGAAAAATGGAAAGAGAACAAAAATGGAAAGCATGATTGTCTTCTTCTCCGTCTTTCACGAGCCACGGCGTATGCAGCCGCCCCGTTGTTTCTTCAATCTTCTTCTCCGGGGAGCCTTAGGCGGCGGGGATACGCAATAAGTGGATACAAATGTCTTTATTGTATCAGGTACCGATTAGGGAAATTTATGCTAAAGAGACAACCAGAGTTTTTCTTTCTTGCNGGAAATTTATGCTAAAGATACAACCAGAGTTTTTCTTTCTTGCTTTGCTAGATATGTGCGTGTCTTGTGCAATTCGCACAACTCCAGGTTATCGTCGCCGTTTTCTACCTATCAGGTTGTGCCGAAAATCTCATCAACAGATAGAGACTATAGTGCCAATTCGAATGTTGCACGCACGAACTGGCTGATCACAAAGCTTGGTAAAGAAGGAAAAATCGGAGAGGCACGTAGGGTGTTCGAGGAAATGCCCGATCGAGATGTGGTCTCATGGACTGCAGTAATTACAGGGTATATCAAATGTGGAATGATTGAGGAAGCTAAGAAGCTATTTGATAGAGATGACGCTATAAAGAATGTTGTTACTTGGACAGCATTGGTTAGTGGATATGTAAGATTGAGCCGGATTGAGGAGGCTAGAAGCTTGTTTGATGCCATGCCAGTTAAGAATGTTGTTTCGTGGAACACTATGATTGAAGGGTATGCGCGAAAGGGTTGGGTCGATCAGGCTTTTGATTTGTTTAAAAGAATGCCCGAGAGGAATGTGGTTTCTTGGAACACTGTTATTACAGCATTGATGAAAAGGAGGAGAGTAGATGAAGCTCAGGAGCTTTTTAACCAGATGCCGGAGAGAGATGTGATTTCTTGGACGGCCATGGTGGCTGGTTTGGCAAAAAATGGGAGAATTGATGATGCCCGTTTAGTGTTCGATAAAATGCCTGAGCGAAATGTGGTTTCCTGGAATGCAATAATTACTGGGTATGCTCAGAATATGCGGCTGGATGAGGCCTTTGAACTGTTTGAGAAAATTCCAGAGAGGGATGTGCCTTCATGGAACGCCATGATTACAGGGTTCATTCAAAACGGTAAGCTTGAAAGGGCAGTGGATTTGTTCTATAAAATGCCTAACAAAAATGTTGTTTCTTGGACAGCAATGATTTCTGGACATGTACAAGATGGGCAAAGTGAAGAAGCATTGAAGATTTTTTCAGAAATGCAAGCAGCCAACAATGTAAAACCAAATGAAGGTACTTTTGTCAGCGTGTTGGGTGCTTGTAGTAACTTAGCCGGTCTTTGCGAGGGACAACAAATTCACCAGATAATAAGTAAGTCAGTATACCAAGAAGTTACAGATGTAGTATCAGCTTTAATAAGCATGTATTCAAAATGTGGGGAGTTGGATATGGCTCGCAAGATATTCGATGATGGATCGACAAGCCACAGAGATGTAGTTTCTTGGAATGGGATGATTGCAGCCTATGCTCATCATGGCCATGGCTACAAAGCAATTCGTTTATTTGATGAAATGCAGGCATTGGGATTTCGTCCAGATAATGTCACCTATATCGCGTTGCTTTCTGCTTGTAGTCATGCTGGCCTTGTGGATGAGGGGTTGAAATACTTCGAAAATCTCGTAAGAGATGGGTCTATAACGCTAAGAGAAGATCATTTCACATGCTTGGTCGATCTTTTTGGCCGAGCGGGACGACTCCAAGAGGCATTTGATTTCATCAAGGGGCTTGAGGATAAGCCTTCATCGTCTGTTTGGGCAGCTCTTCTTGCTGGATGTAATGTTCATGGCAATATAGATTTGGGCAAGTTAACGGCTGAAAAGCTTTTGGAAACAGAACCAGAGAATGCAGGAACCTTTATGCTGCTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCCAAAGTAAGGTTGAAAATGAAGGATAAGGGATTGAAGAAGCAACCTGGTTGCAGTTGGATAGAAGTTGGTAATGCAGTGCACGTGTTCGTAGTGGGCGACAATTCTCATTGCCAATCTGAAAATATTTATCCTTTACTTCATGATCTGCATATGAAAATGAAGAAGATTGGTCATACATTATATGAAGATTTAACAGTGGATTTGAATCTTGTGATTCCATGAGCCTGTAATTGGTGTCAAATTTGCTTGGCCAACCATATGTTCTTCAACGCTGCTACACCCAGAGGTTGGTTCAATTCCTATGTTCATCTCCATATCTCTTCCCTGCCATATTCACAGGCAAATGGCAAGCAGGGAAGCGAGCGGCTTGTACTGATGAGATTGCCTCCACCGTCAACAACTAAGCTAAATCTTGTGCCCTTTGCTACAGGTCTGTCTTCTTTGAGTCTATGAACTATGTTATTTAAAGAAAGGGATACAGTGGGAAGCAAATGTGAGATCCCACGTGAGTTGGAGAGAAGAACGAATCATTCTTTATAAGGGTGTGGAAATCTCTCCTTAGCATATGCGTTTTAAAAACCTTGAAGGAAAGCCTAGAAAGAAAAGCCGAAAGAGGACAATATTTGCTAGCGGTAGATTTTTCTATCCATTTCAATAACCGTACTTTTGTGCTTTGGCAACTTGAACAGTCCATCCATTTTTAAGTTCTTTGTTTTCGTACTTTTTAACTTATGGACATGGTAAAGTAGCAATCAAAGTAGTTGTTTAAAGAAGATACTTTTGTGCTTTAAAGATTGGTAGTGCTCTCCATGTGATTTTTCCTTTTAATTATCGTTGGTAGGGAATACCACATCGACTAATTAAGGAATTGATAATGAGTTTATAAGTAAGAAATTCATCTCAGTTTATGCTCAAAGTGGACAACATCATACCGACCCATATTTTTCTTATTTTTCAGTTGGATTGATGTTAATTATATCAACACTTTCAACCCAAACTAAATCAGAAGGTGGGGGATAAGTAAGGAATAATATATCGAAATATATGGGCAAAAATTTAACATTTATAGAACAATTACTATAAATTTTATTTTTTCTTTAAAAAAAAAAAAAATCCCCGTAAAATAAGATAACCTGAAAAAGGAAATTGTGGTGAAATCGGCTTTAGCTACACGCTACGGGTAACATTTCTTCAACCATAAAGTTTGCAGCTTTATCTTTTACTCAGCCCAATAGCCTCTGCCTCTGTTCTCTAATGGCTTCCTCTAAATCTAGTCCAATTCCTTCAATGGATATGCTCTGAAACTCCCAGTCCACGCCTCTACCTCGAACAACACACCGGAAAGGCCATGGCAATGACATGGCACATGGCGTTTTGGATCGCTAACATGGTTTGGGTGGCCTTGAGCGACTGTGTTTCTTCTTGTTTGGCCATCGCCGACGAGGTCGCGGGCTCCATCAGA

mRNA sequence

AAAAATGGGGAAAAATGGAAAGAGAACAAAAATGGAAAGCATGATTGTCTTCTTCTCCGTCTTTCACGAGCCACGGCGTATGCAGCCGCCCCGTTGTTTCTTCAATCTTCTTCTCCGGGGAGCCTTAGGCGGCGGGGATACGCAATAAGTGGATACAAATGTCTTTATTGTATCAGATATGTGCGTGTCTTGTGCAATTCGCACAACTCCAGGTTATCGTCGCCGTTTTCTACCTATCAGGTTGTGCCGAAAATCTCATCAACAGATAGAGACTATAGTGCCAATTCGAATGTTGCACGCACGAACTGGCTGATCACAAAGCTTGCATTGATGAAAAGGAGGAGAGTAGATGAAGCTCAGGAGCTTTTTAACCAGATGCCGGAGAGAGATGTGATTTCTTGGACGGCCATGGTGGCTGGTTTGGCAAAAAATGGGAGAATTGATGATGCCCGTTTAGTGTTCGATAAAATGCCTGAGCGAAATGTGGTTTCCTGGAATGCAATAATTACTGGGTATGCTCAGAATATGCGGCTGGATGAGGCCTTTGAACTGTTTGAGAAAATTCCAGAGAGGGATGTGCCTTCATGGAACGCCATGATTACAGGGTTCATTCAAAACGGTAAGCTTGAAAGGGCAGTGGATTTGTTCTATAAAATGCCTAACAAAAATGTTGTTTCTTGGACAGCAATGATTTCTGGACATGTACAAGATGGGCAAAGTGAAGAAGCATTGAAGATTTTTTCAGAAATGCAAGCAGCCAACAATGTAAAACCAAATGAAGGTACTTTTGTCAGCGTGTTGGGTGCTTGTAGTAACTTAGCCGTCCAATTCCTTCAATGGATATGCTCTGAAACTCCCAGTCCACGCCTCTACCTCGAACAACACACCGGAAAGGCCATGGCAATGACATGGCACATGGCGTTTTGGATCGCTAACATGGTTTGGGTGGCCTTGAGCGACTGTGTTTCTTCTTGTTTGGCCATCGCCGACGAGGTCGCGGGCTCCATCAGA

Coding sequence (CDS)

AAAAATGGGGAAAAATGGAAAGAGAACAAAAATGGAAAGCATGATTGTCTTCTTCTCCGTCTTTCACGAGCCACGGCGTATGCAGCCGCCCCGTTGTTTCTTCAATCTTCTTCTCCGGGGAGCCTTAGGCGGCGGGGATACGCAATAAGTGGATACAAATGTCTTTATTGTATCAGATATGTGCGTGTCTTGTGCAATTCGCACAACTCCAGGTTATCGTCGCCGTTTTCTACCTATCAGGTTGTGCCGAAAATCTCATCAACAGATAGAGACTATAGTGCCAATTCGAATGTTGCACGCACGAACTGGCTGATCACAAAGCTTGCATTGATGAAAAGGAGGAGAGTAGATGAAGCTCAGGAGCTTTTTAACCAGATGCCGGAGAGAGATGTGATTTCTTGGACGGCCATGGTGGCTGGTTTGGCAAAAAATGGGAGAATTGATGATGCCCGTTTAGTGTTCGATAAAATGCCTGAGCGAAATGTGGTTTCCTGGAATGCAATAATTACTGGGTATGCTCAGAATATGCGGCTGGATGAGGCCTTTGAACTGTTTGAGAAAATTCCAGAGAGGGATGTGCCTTCATGGAACGCCATGATTACAGGGTTCATTCAAAACGGTAAGCTTGAAAGGGCAGTGGATTTGTTCTATAAAATGCCTAACAAAAATGTTGTTTCTTGGACAGCAATGATTTCTGGACATGTACAAGATGGGCAAAGTGAAGAAGCATTGAAGATTTTTTCAGAAATGCAAGCAGCCAACAATGTAAAACCAAATGAAGGTACTTTTGTCAGCGTGTTGGGTGCTTGTAGTAACTTAGCCGTCCAATTCCTTCAATGGATATGCTCTGAAACTCCCAGTCCACGCCTCTACCTCGAACAACACACCGGAAAGGCCATGGCAATGACATGGCACATGGCGTTTTGGATCGCTAACATGGTTTGGGTGGCCTTGAGCGACTGTGTTTCTTCTTGTTTGGCCATCGCCGACGAGGTCGCGGGCTCCATCAGA

Protein sequence

KNGEKWKENKNGKHDCLLLRLSRATAYAAAPLFLQSSSPGSLRRRGYAISGYKCLYCIRYVRVLCNSHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLAVQFLQWICSETPSPRLYLEQHTGKAMAMTWHMAFWIANMVWVALSDCVSSCLAIADEVAGSIR
Homology
[Close]
BLAST of Cp4.1LG03g08670 vs. Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-59
Identity = 104/173 (60.12%), Postives = 139/173 (80.35%), Query Frame = 1 

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W     AL++R R+DEA  LF +MP RDV+SWTAMV GLAKNG++D+AR +FD MPERN
Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           ++SWNA+ITGYAQN R+DEA +LF+ +PERD  SWN MITGFI+N ++ +A  LF +MP 
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           KNV+SWT MI+G+V++ ++EEAL +FS+M    +VKPN GT+VS+L ACS+LA
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345

[Close]
BLAST of Cp4.1LG03g08670 vs. Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.3e-41
Identity = 81/177 (45.76%), Postives = 122/177 (68.93%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           +V   N +IT  A  +  ++DEA++LF++ P +DV +WTAMV+G  +N  +++AR +FDK
Sbjct: 249 DVVSWNTIITGYA--QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 308

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MPERN VSWNA++ GY Q  R++ A ELF+ +P R+V +WN MITG+ Q GK+  A +LF
Sbjct: 309 MPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 368

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNL 274
            KMP ++ VSW AMI+G+ Q G S EAL++F +M+     + N  +F S L  C+++
Sbjct: 369 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADV 422

[Close]
BLAST of Cp4.1LG03g08670 vs. Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.8e-39
Identity = 78/177 (44.07%), Postives = 115/177 (64.97%), Query Frame = 1 

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W +   AL    R ++A ELF++MPER+V+SW  +V GL +NG ++ A+ VFD MP R+
Sbjct: 140 SWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRD 199

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           VVSWNA+I GY +N  ++EA  LF  + E++V +W +M+ G+ + G +  A  LF +MP 
Sbjct: 200 VVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPE 259

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQA-ANNVKPNEGTFVSVLGACSNLAVQF 278
           +N+VSWTAMISG   +    EAL +F EM+   + V PN  T +S+  AC  L V+F
Sbjct: 260 RNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEF 316

[Close]
BLAST of Cp4.1LG03g08670 vs. Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-38
Identity = 84/206 (40.78%), Postives = 126/206 (61.17%), Query Frame = 1 

Query: 69  NSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPE 128
           + R+      Y+++P     D+D     N+ART+ +     L K  RVDEA+E+F++M E
Sbjct: 154 DGRIDDACKLYEMIP-----DKD-----NIARTSMIH---GLCKEGRVDEAREIFDEMSE 213

Query: 129 RDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKI 188
           R VI+WT MV G  +N R+DDAR +FD MPE+  VSW +++ GY QN R+++A ELFE +
Sbjct: 214 RSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 273

Query: 189 PERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFS 248
           P + V + NAMI+G  Q G++ +A  +F  M  +N  SW  +I  H ++G   EAL +F 
Sbjct: 274 PVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFI 333

Query: 249 EMQAANNVKPNEGTFVSVLGACSNLA 275
            MQ    V+P   T +S+L  C++LA
Sbjct: 334 LMQ-KQGVRPTFPTLISILSVCASLA 345

[Close]
BLAST of Cp4.1LG03g08670 vs. Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-35
Identity = 68/158 (43.04%), Postives = 109/158 (68.99%), Query Frame = 1 

Query: 116 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 175
           V +A +LF +M ERD +SW +M+ GL K G + DAR +FD+MP+R+++SWN ++ GYA+ 
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229

Query: 176 MRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKM--PNKNVVSWTAMISG 235
             + +AFELFEK+PER+  SW+ M+ G+ + G +E A  +F KM  P KNVV+WT +I+G
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289

Query: 236 HVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 272
           + + G  +EA ++  +M  A+ +K +    +S+L AC+
Sbjct: 290 YAEKGLLKEADRLVDQM-VASGLKFDAAAVISILAACT 326

[Close]
BLAST of Cp4.1LG03g08670 vs. TrEMBL
Match: A0A0A0LCG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822150 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.2e-79
Identity = 148/178 (83.15%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N +IT  A M+RRRVDEAQELFN+MPERDVISWT MVAGL+KNGRIDDARL+FDK
Sbjct: 190 NVVSWNTVIT--AFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 249

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MP RNVVSWN +I GYAQNMRLDEAF+LFE++PER++ SWN MITGFIQNGKLERAVD F
Sbjct: 250 MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFF 309

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           YKM NKNVV+WTA+ISGHVQDG+SEEALKIFSEMQAANNVKPNEGTFVSVLGACS LA
Sbjct: 310 YKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLA 365

[Close]
BLAST of Cp4.1LG03g08670 vs. TrEMBL
Match: A0A061F3E4_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_024389 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 5.6e-68
Identity = 134/209 (64.11%), Postives = 165/209 (78.95%), Query Frame = 1 

Query: 69  NSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPE 128
           N  +   F  +Q +P+            NV   N ++T LA  +  RV++A+ LF++MP+
Sbjct: 155 NGMVGKAFELFQEMPE-----------RNVVSWNTMLTALA--QCGRVEDARGLFDRMPK 214

Query: 129 RDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKI 188
           RDVISWTAMVAGLAKNG+ID+AR VFD+MPERNVVSWNA+ITGY+QNM+LDEAFELFE++
Sbjct: 215 RDVISWTAMVAGLAKNGKIDEARRVFDRMPERNVVSWNAMITGYSQNMKLDEAFELFERM 274

Query: 189 PERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFS 248
           PER++ SWNAMITGFIQNG+L+RA  LF K+P KNVVSWT MI+G+VQD QSEEALKIFS
Sbjct: 275 PERNLSSWNAMITGFIQNGELKRAEKLFDKVPRKNVVSWTTMITGYVQDEQSEEALKIFS 334

Query: 249 EMQAANNVKPNEGTFVSVLGACSNLAVQF 278
           +M A + VKPNEGTFVSVL ACS+LA  F
Sbjct: 335 KMMAEDGVKPNEGTFVSVLSACSDLAGLF 350

[Close]
BLAST of Cp4.1LG03g08670 vs. TrEMBL
Match: F6HLQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05520 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.6e-67
Identity = 129/208 (62.02%), Postives = 162/208 (77.88%), Query Frame = 1 

Query: 67  SHNSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQM 126
           + N R+ S    ++ +P+            NV   N +++ LA  +  R++EA+ LF++M
Sbjct: 172 AQNGRIDSAMYLFEKMPE-----------RNVVSWNTVMSMLA--QCGRIEEARRLFDRM 231

Query: 127 PERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFE 186
           PERDVISWTAM+AGL+KNGRID+ARL+FD+MPERNVVSWNA+ITGYAQN+RLDEA +LFE
Sbjct: 232 PERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFE 291

Query: 187 KIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKI 246
           ++PERD+PSWN MITG IQNG L RA  LF +MP KNV+SWT MI+G VQ+G+SEEALKI
Sbjct: 292 RMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKI 351

Query: 247 FSEMQAANNVKPNEGTFVSVLGACSNLA 275
           FS M + N  KPN+GTFVSVLGACSNLA
Sbjct: 352 FSRMLSTNGAKPNQGTFVSVLGACSNLA 366

[Close]
BLAST of Cp4.1LG03g08670 vs. TrEMBL
Match: A0A0D2RC91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248100 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 5.8e-65
Identity = 125/184 (67.93%), Postives = 152/184 (82.61%), Query Frame = 1 

Query: 91  DYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDA 150
           D     NV   N ++T  AL++  RV++A+ LF++MP++DVISWTAMV GLAKNGR+D+A
Sbjct: 169 DEMPERNVVSWNTMLT--ALVQCGRVEDARALFDKMPKKDVISWTAMVTGLAKNGRVDEA 228

Query: 151 RLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLE 210
           R VFD+MPERNVVSWNA+ITGYAQNM+LDEAF+LFE++P RD+ SWN MITG IQNG+L 
Sbjct: 229 RKVFDRMPERNVVSWNAMITGYAQNMKLDEAFDLFERMPMRDLSSWNGMITGLIQNGELR 288

Query: 211 RAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGAC 270
           RA  LF +MP KNVVSWT MI+G+VQ  QSEEALKIF++M A + VKPNEGTFVSVL AC
Sbjct: 289 RAEKLFNEMPCKNVVSWTTMITGYVQSEQSEEALKIFAKMLAEDRVKPNEGTFVSVLSAC 348

Query: 271 SNLA 275
           SNLA
Sbjct: 349 SNLA 350

[Close]
BLAST of Cp4.1LG03g08670 vs. TrEMBL
Match: A0A0L9UUA4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g141500 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.2e-64
Identity = 121/178 (67.98%), Postives = 151/178 (84.83%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N LIT   L++  RVD+AQ LF+QM ERDV+SWT MVAG +KNGR++DAR +FD+
Sbjct: 160 NVVSWNTLIT--TLVQCGRVDDAQRLFDQMKERDVVSWTTMVAGFSKNGRVEDARALFDR 219

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MP+RNVVSWNA+ITGYAQN RLDEA +LF+++PER++PSWN MITGFIQNG+L RA  LF
Sbjct: 220 MPDRNVVSWNAMITGYAQNGRLDEALDLFQRMPERNMPSWNTMITGFIQNGELNRAEKLF 279

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           ++MP KNVV+WTAM++G+VQ G SEEALK FS+M AA+ +KPN GTFV+VLGACS+LA
Sbjct: 280 FEMPVKNVVTWTAMMTGYVQHGLSEEALKAFSKMLAADGLKPNTGTFVTVLGACSDLA 335

[Close]
BLAST of Cp4.1LG03g08670 vs. TAIR10
Match: AT2G35030.1 (AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 231.5 bits (589), Expect = 7.7e-61
Identity = 104/173 (60.12%), Postives = 139/173 (80.35%), Query Frame = 1 

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W     AL++R R+DEA  LF +MP RDV+SWTAMV GLAKNG++D+AR +FD MPERN
Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           ++SWNA+ITGYAQN R+DEA +LF+ +PERD  SWN MITGFI+N ++ +A  LF +MP 
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           KNV+SWT MI+G+V++ ++EEAL +FS+M    +VKPN GT+VS+L ACS+LA
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345

[Close]
BLAST of Cp4.1LG03g08670 vs. TAIR10
Match: AT4G02750.1 (AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 169.1 bits (427), Expect = 4.7e-42
Identity = 81/177 (45.76%), Postives = 122/177 (68.93%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           +V   N +IT  A  +  ++DEA++LF++ P +DV +WTAMV+G  +N  +++AR +FDK
Sbjct: 249 DVVSWNTIITGYA--QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 308

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MPERN VSWNA++ GY Q  R++ A ELF+ +P R+V +WN MITG+ Q GK+  A +LF
Sbjct: 309 MPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 368

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNL 274
            KMP ++ VSW AMI+G+ Q G S EAL++F +M+     + N  +F S L  C+++
Sbjct: 369 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG-RLNRSSFSSALSTCADV 422

[Close]
BLAST of Cp4.1LG03g08670 vs. TAIR10
Match: AT1G32415.1 (AT1G32415.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 162.5 bits (410), Expect = 4.4e-40
Identity = 78/177 (44.07%), Postives = 115/177 (64.97%), Query Frame = 1 

Query: 102 NWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERN 161
           +W +   AL    R ++A ELF++MPER+V+SW  +V GL +NG ++ A+ VFD MP R+
Sbjct: 140 SWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRD 199

Query: 162 VVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKMPN 221
           VVSWNA+I GY +N  ++EA  LF  + E++V +W +M+ G+ + G +  A  LF +MP 
Sbjct: 200 VVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPE 259

Query: 222 KNVVSWTAMISGHVQDGQSEEALKIFSEMQA-ANNVKPNEGTFVSVLGACSNLAVQF 278
           +N+VSWTAMISG   +    EAL +F EM+   + V PN  T +S+  AC  L V+F
Sbjct: 260 RNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEF 316

[Close]
BLAST of Cp4.1LG03g08670 vs. TAIR10
Match: AT1G09410.1 (AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-39
Identity = 84/206 (40.78%), Postives = 126/206 (61.17%), Query Frame = 1 

Query: 69  NSRLSSPFSTYQVVPKISSTDRDYSANSNVARTNWLITKLALMKRRRVDEAQELFNQMPE 128
           + R+      Y+++P     D+D     N+ART+ +     L K  RVDEA+E+F++M E
Sbjct: 154 DGRIDDACKLYEMIP-----DKD-----NIARTSMIH---GLCKEGRVDEAREIFDEMSE 213

Query: 129 RDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQNMRLDEAFELFEKI 188
           R VI+WT MV G  +N R+DDAR +FD MPE+  VSW +++ GY QN R+++A ELFE +
Sbjct: 214 RSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 273

Query: 189 PERDVPSWNAMITGFIQNGKLERAVDLFYKMPNKNVVSWTAMISGHVQDGQSEEALKIFS 248
           P + V + NAMI+G  Q G++ +A  +F  M  +N  SW  +I  H ++G   EAL +F 
Sbjct: 274 PVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFI 333

Query: 249 EMQAANNVKPNEGTFVSVLGACSNLA 275
            MQ    V+P   T +S+L  C++LA
Sbjct: 334 LMQ-KQGVRPTFPTLISILSVCASLA 345

[Close]
BLAST of Cp4.1LG03g08670 vs. TAIR10
Match: AT3G29230.1 (AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-36
Identity = 68/158 (43.04%), Postives = 109/158 (68.99%), Query Frame = 1 

Query: 116 VDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDKMPERNVVSWNAIITGYAQN 175
           V +A +LF +M ERD +SW +M+ GL K G + DAR +FD+MP+R+++SWN ++ GYA+ 
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229

Query: 176 MRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLFYKM--PNKNVVSWTAMISG 235
             + +AFELFEK+PER+  SW+ M+ G+ + G +E A  +F KM  P KNVV+WT +I+G
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289

Query: 236 HVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 272
           + + G  +EA ++  +M  A+ +K +    +S+L AC+
Sbjct: 290 YAEKGLLKEADRLVDQM-VASGLKFDAAAVISILAACT 326

[Close]
BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: gi|659085176|ref|XP_008443284.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 1.4e-80
Identity = 152/179 (84.92%), Postives = 165/179 (92.18%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N +IT  ALM+RRRVDEAQ LFN+MPERDVISWT MVAGL+KNGRIDDARL+FDK
Sbjct: 99  NVVSWNTVIT--ALMQRRRVDEAQALFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 158

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MP RNVVSWNAII GYAQNMRLDEAF+LFE++PER++ SWN MITGFIQNGKLERAVDLF
Sbjct: 159 MPVRNVVSWNAIIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDLF 218

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLAV 276
           YKM NKNVV+WTA+ISGHVQDG+SEEALKIFSEMQAANNVKPNEGTFVSVLGACS LAV
Sbjct: 219 YKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAV 275

[Close]
BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: gi|700204330|gb|KGN59463.1| (hypothetical protein Csa_3G822150 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 4.5e-79
Identity = 148/178 (83.15%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N +IT  A M+RRRVDEAQELFN+MPERDVISWT MVAGL+KNGRIDDARL+FDK
Sbjct: 190 NVVSWNTVIT--AFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 249

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MP RNVVSWN +I GYAQNMRLDEAF+LFE++PER++ SWN MITGFIQNGKLERAVD F
Sbjct: 250 MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFF 309

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           YKM NKNVV+WTA+ISGHVQDG+SEEALKIFSEMQAANNVKPNEGTFVSVLGACS LA
Sbjct: 310 YKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLA 365

[Close]
BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: gi|778688896|ref|XP_011652860.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 4.5e-79
Identity = 148/178 (83.15%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N +IT  A M+RRRVDEAQELFN+MPERDVISWT MVAGL+KNGRIDDARL+FDK
Sbjct: 152 NVVSWNTVIT--AFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 211

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MP RNVVSWN +I GYAQNMRLDEAF+LFE++PER++ SWN MITGFIQNGKLERAVD F
Sbjct: 212 MPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFF 271

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           YKM NKNVV+WTA+ISGHVQDG+SEEALKIFSEMQAANNVKPNEGTFVSVLGACS LA
Sbjct: 272 YKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLA 327

[Close]
BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: gi|659085167|ref|XP_008443281.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 6.1e-76
Identity = 141/178 (79.21%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N +IT  ALM+ +R+DEAQELFN+MPERDVISWT MVA L+KNGRIDDARL+FDK
Sbjct: 190 NVVSWNTVIT--ALMQHKRIDEAQELFNRMPERDVISWTTMVASLSKNGRIDDARLLFDK 249

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           MPERNVVSWNAII GYAQNMR+DEAF+LFE++PER++ SWN MITGFIQNGKLERAVDLF
Sbjct: 250 MPERNVVSWNAIIIGYAQNMRIDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDLF 309

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
           YKMPNK+VV+WTA+ISG+VQDG+SEEALK+F EMQAAN+VKPN  TFV+VLGACS LA
Sbjct: 310 YKMPNKDVVTWTAVISGYVQDGRSEEALKVFKEMQAANDVKPNAITFVNVLGACSKLA 365

[Close]
BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match: gi|1009164639|ref|XP_015900607.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 267.3 bits (682), Expect = 3.6e-68
Identity = 125/178 (70.22%), Postives = 155/178 (87.08%), Query Frame = 1 

Query: 97  NVARTNWLITKLALMKRRRVDEAQELFNQMPERDVISWTAMVAGLAKNGRIDDARLVFDK 156
           NV   N +IT LA  + RR++ A+ LF++MP+RDVISWTAMVAGL++NGRID+AR +FD+
Sbjct: 188 NVVSWNTIITALA--QCRRIEHARRLFDEMPDRDVISWTAMVAGLSRNGRIDEARELFDR 247

Query: 157 MPERNVVSWNAIITGYAQNMRLDEAFELFEKIPERDVPSWNAMITGFIQNGKLERAVDLF 216
           +P RNVVSWNA+ITGYAQNMRLDEAFELFE++PERD+PSWN MITGFIQNG L+RA +LF
Sbjct: 248 IPVRNVVSWNAMITGYAQNMRLDEAFELFERMPERDMPSWNTMITGFIQNGDLKRAWELF 307

Query: 217 YKMPNKNVVSWTAMISGHVQDGQSEEALKIFSEMQAANNVKPNEGTFVSVLGACSNLA 275
            +MP KN +SWT MI+G++QDGQ+EEALKIFS+M AA  V+PN+GTFVS+L ACSNLA
Sbjct: 308 NEMPQKNAISWTTMITGYIQDGQNEEALKIFSKMVAAGGVRPNQGTFVSILSACSNLA 363

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g08670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP185_ARATH1.4e-5960.12Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
PP301_ARATH8.3e-4145.76Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN... [more]
PPR69_ARATH7.8e-3944.07Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidop... [more]
PPR25_ARATH6.6e-3840.78Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN... [more]
PP261_ARATH5.2e-3543.04Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG03g08670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCG2_CUCSA3.2e-7983.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822150 PE=4 SV=1[more]
A0A061F3E4_THECC5.6e-6864.11Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1 OS=Theobr... [more]
F6HLQ6_VITVI1.6e-6762.02Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05520 PE=4 SV=... [more]
A0A0D2RC91_GOSRA5.8e-6567.93Uncharacterized protein OS=Gossypium raimondii GN=B456_002G248100 PE=4 SV=1[more]
A0A0L9UUA4_PHAAN2.2e-6467.98Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g141500 PE=4 SV=1[more]
BLAST of Cp4.1LG03g08670 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35030.17.7e-6160.12 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G02750.14.7e-4245.76 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G32415.14.4e-4044.07 pentatricopeptide (PPR) repeat-containing protein[more]
AT1G09410.13.7e-3940.78 pentatricopeptide (PPR) repeat-containing protein[more]
AT3G29230.13.0e-3643.04 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG03g08670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085176|ref|XP_008443284.1|1.4e-8084.92PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial ... [more]
gi|700204330|gb|KGN59463.1|4.5e-7983.15hypothetical protein Csa_3G822150 [Cucumis sativus][more]
gi|778688896|ref|XP_011652860.1|4.5e-7983.15PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial ... [more]
gi|659085167|ref|XP_008443281.1|6.1e-7679.21PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g... [more]
gi|1009164639|ref|XP_015900607.1|3.6e-6870.22PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08670.1Cp4.1LG03g08670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 129..157
score: 8.3E-7coord: 160..187
score: 5.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 222..270
score: 6.8
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 163..193
score: 7.4E-6coord: 225..260
score: 6.3E-8coord: 132..163
score: 2.1E-7coord: 195..224
score: 7.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 227..257
score: 7.114coord: 192..226
score: 11.268coord: 165..191
score: 6.982coord: 97..129
score: 6.665coord: 130..164
score: 11
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 109..254
score: 6.
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 102..254
score: 1.0
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 111..274
score: 3.6E
NoneNo IPR availablePANTHERPTHR24015:SF379SUBFAMILY NOT NAMEDcoord: 111..274
score: 3.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g08670Cucsa.337920Cucumber (Gy14) v1cgycpeB0888
Cp4.1LG03g08670CmaCh14G005200Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g08670CmoCh14G005240Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g08670Cla002894Watermelon (97103) v1cpewmB597
Cp4.1LG03g08670Csa3G822150Cucumber (Chinese Long) v2cpecuB597
Cp4.1LG03g08670ClCG10G016060Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g08670CSPI03G37990Wild cucumber (PI 183967)cpecpiB599
Cp4.1LG03g08670Lsi03G015930Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g08670MELO3C030716.2Melon (DHL92) v3.6.1cpemedB679
Cp4.1LG03g08670Bhi11G002354Wax gourdcpewgoB0743
Cp4.1LG03g08670CsGy3G035460Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g08670Carg03476Silver-seed gourdcarcpeB0353
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g08670Bottle gourd (USVL1VR-Ls)cpelsiB489
Cp4.1LG03g08670Melon (DHL92) v3.5.1cpemeB572
Cp4.1LG03g08670Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g08670Cucurbita maxima (Rimu)cmacpeB682