Cp4.1LG03g08320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g08320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMediator of RNA polymerase II transcription subunit 23
LocationCp4.1LG03 : 2822566 .. 2829452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCTTCCCGGGATTCCAATGATTGGTATTCAAATTGCAAACGTGTTCGACGCGCGTCTTTATATTCCCATTACACGTTGCCCTCTGCCGCTCCACAAAACATCCAAGTGGAGGAGAGGAACCACCGTTAGAGATCGATAGCCTCTGCTATGGAAGTTCATCCGACCTCTTCACTCCAGGGTTTGTGCAAAATTCCTTCTCACCTCTCGATCTTCCTTACGTGTTCTGTTTTCTATTTGCTTCCAATGAAAATCATGCCGATTCGGTAGAATAACTATGCGTTTGATTTTTCTTAATTTTTTGTTTGGTTACTATTCTTCGTCTTGATTTTAATTTTGTTTTCATCGAGTATCATTCTGCTTCAATGTTGCTCTCTGGATCTAAACCGACTATTATTTTTAGAGGAATCGATGATGTTGGTAAGAACTGTTTTGTGCATTCTCAAATGCAAAATTTTCATAGAATTGTCAACATTTTCATTGAAGAGTTCGAGAAAGATCTTGAAAAATCATCCCAAACTCAGTATCTTGTACGTCGGAGTTCATCTGTTAATTTTTGCTGAGAATTTCAATGTCTTCCTTCCTTCCTCCCCTCGATTTGAAGTTTTCTTTTCTTTTTCACATCAGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAACGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTTCGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAGGCTACAATTCGCAGTGCTCGAGCATATGAAGGGCCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAGTTCCGCTTTGAGCATTTTGTTTGTGTCCAACTTCAGTCATTTGTAAGTACGGTTTGTTTACAAGGTCTATACAGGATCATGTTTTGTCTTATGTCACTTTAGGAAGATGTATTACTTTGTTGTGTCTTTGAATCAATAAAGATCACGACCCTTTCCAATGCAATCATCAAGATAGATAGATTTTGAGGGTGAATCTTTCAAAATTATGCTTGATATGATGTATTGGACCTTCGATTGTGATTTTAAATCCTAAACCTCTCGAGGACAAAGAACTCAAAGAGTCAAGACATTGAAAGTTTTTGTTCTGATTAATGGTAATATTACGACAGAATACATTTTAAATTTATTTGACCTTTCATATCATTTTGGCATTCTCTTCTTCTAGGATGCTCGTTTTGTGGTTTGTTTTAGATACAAGATGTTGTACAGGGGTGGCTTTCTGGAAGATCCTTTGTCCCGGGGCAAGGATTGATAATGGGTCATAGGCAGATTTCCTCTCCATCAGTACCCGCCATTTGGAGCCAAAATGAGCTTGCCACTCGTCTTGGGAGCTATAATGAGGCAGATATTGCGTACATCCAGGAAGATCCCTGACACAGTAGTCCAGAATTATTTGGTTTTGGGCTAAAATGTACTCTAAGCTTTGTTTTCCGGTTGAAGTTGGCAGTGCAGAAAATAAGAAACCCACTAGGTAGAATATTTCTTCGTCTGGTGTGACCACTGATGTTTTATTGTTCCACCTGTACAACCCAAACTGATTTGTATTAGGATGGGGAAATTGTAAGTGTAGAGTTTCTGGGACAAATCTATTGAAACAAGTACTTGGATTTGTTAACCGGGTAGATTAGTATGGGACCATTGGTAGAATCTGATAGAATTTTGTCAAACACCTCTGCAGCAAAATCATGTATTTTGCTTCTTGGGATCATTAGATTCATCCAAGGATGAGGAACCTCCCACAATCCTTTTTCCCTGAGTTTTTTCTCAGATATGTGCACTCTATCCAGAAACTCCACGTAAGGAACTTCCGACTGAAAGAGAGTAGCTGGAATGTACCTCAATTGTGATAGCAACTTCTCAATTCTCTGCACAATCACATAGAGTTTGGAAATGACATTATTTGGTTTTTTAACTGTTTTTTTGGCTGTTTGTCATGAGCTTGATATCTGATAATGTCTATGGAAATGCTCACCTTGTTCATAGTTTCTGTCTCTTCAGAGTTGAAGTACATGGCCATTTCTAGACAATACAGTGTCGCTCTATCTGAGACGAATTGGCTGGCTTGAACTGGATCTTTGGGATCAAATGAAGATCTCCAATTATTGAGAATGCCAGTTCTATTTATTAGAACAAAGCCTTCAATATAATCAAAGGAGTACTTGGTGGATATCAGATGTTCCTGGTCCTTGGAGAATATGGCGAAGTCTGAATACAAGGTTCTTATCCACTTTACCTGTCAAAAGATGGCGGATTGTGTTTTGCATTACAAGATATCACTAAAAATGTTATATTATATACCTATTCTGATGGAATGCAGGGTGTATTACCATTTTTGGTGCTGATTCTAGAGAAATCCTTGCCCTTGTGATGATGCCAAACTGACCAAGGCCTCCAAGTACGCTGTAAAACAGGTCTGCATTCTGCTGCGCTGAACAGGTAATAACCTCGCCCTTTCCTGCATTCAATTGAAACTACATCGGTTTGTCTGCCTCCAAGGTTTAATATTGAAATAATTCGAAGCTTGGTTTCTTTTGCTCTGGTGGACTTCGTTTTAGTTCTCTCTCTAATTCTCCTTGGCTTTCTCCATTTTTAGCGCTTTTGGCCCCTGGCAACCTCTCATCATTTTTTATTTCTTAGAGAGGTTTAGGCTATTTTCACACTGCTTCCATTTCCCCTTTTTCGCGTCTTCCATATTGGGTTGGTTTTGAGACTCAGGACGTTATACCAACGTTTTTATTTTCCTTCCTTTTCACTGAATGGAAGATTATTCCTTCATGGGTTTGTTCTAATTCTTTCGGTGGGGGGTTGGCCAAAATGAAAGAGTCTAGGGGTCAACAGTTTCCATCGTAGAAGGAAATTACAAAAATTCATGTTAACTTGGGTGATCTTTTTCGATTCTTAAGAAGCTGCAGGTTGATAAGATTGTCCATGTTTGCATCGAATTGTAAGCAATACTTGCAAAGCTTCTTCGACTATATTATTAACCACAATATTTACTTATTCAACATAAATAAGATTCCAAATGTATTTAATATAATTTGATTGTCATGAAATTAAATTTATTATTGAAAATTTTTATGGTAAATTGGAGAAGTAAAATTAGGACCAACGAATAATTTTATTTTGTCCATATCAAGGAATTCTGTTTGTGATTGAAATTACTTGAGTCTTTCAGTCTCTTCATCAAATTTTATAATGGTCTATATTCATGTTTCATATTTGGTTTATGTTATTGTTGCCCTCAATTTTCTCAACAGTGAGATTGTTCATCTAAGTTGGAGGAGGAACATAGAGTGAGCAATTTATAATAAGTTGGGTGGTGAACTTTTTCTTCTCACCTAAGAGAGAGGATCCCTACAGCCAATAACACAAGTAGTATTTAAATTTTTTGCACTGTTACATTGTTGTGGCGTTTATGGACTAAGGATTACATCCCAAAGTGAAATGAAGAAGGCATCTCCAAAATTTTACTGTTCTTTTAACAATAAATCCCTCGAACTTCATGTTATTTTGGTGCCTCAATAAAGGTTCTATCTGATGAGAAAGAAAAGTCTCTTTCTTAATAATTATTTCTCCCAACCACTCTGCTCTATTAAATATTTTTGTTCCCTCTATCGTACAGTATAACCACAAAATCTATCTTTATTGCGGCCCCTCCCTAATTCCTCGATAGAGAACGTTGGTACAGGGATAATAAATATAATATTTTAAGCGGAATATGTGTGTGACTTAAGAGAGAAAAGTAGTTGAGAAAGAGATTTAAATGGAGGGTACTAGAATAATGCTAATTTGACATTTAGAATTTTTAAGTCAAGTTTTGGGGTCCATCCTAATTAAATTGTGGGGTTTGCACAATTTGCCTGATGATCAAGTATAGTTTGGAAGGTTTATCATCAGCATCCAGTTTCGATAATTTGGAAATCAAATTTCCCGTTAGAGTGCTTTTGTTTGTAGTTTTGATTTTTAAATAGGTTCAAGAACTTGAGGAGATTATGTGAGAGATTTGAACTTCCAATGTTTTATTTGAGGGTAAGCCACCTGAGCAATGATTTGGCTGGAAAATATCATTTTAACTGTTATACTTGGGGAGGTCAGCAAAGTTTATACCCAAATTTGGTGACAGAAAAGAGGTTATGAGTTCAAAAGAACTAGTTGTGCAATCACTGAAGGAATGAAAAGCTAGAAAACGAATATGTTATCATTTTACCGTTATTACTTAGTGTGGAATTCTAAACAATATATGCAATATACATTATAGAAAACTTATGAATAAGCCAAGAAAGAGTACCTGTGACAACTTCTAGCTGGTGGACGTTACTGATTTGAGGTCCATGCCTAAAAGCTTGCCCGCTAATACCAGCATTTGATAGAGTACCACCCACAGAAAGATGAAGGTAGTCAGTCCAAGATTTTGGTGTTAAGCCATGTTTAAGCGTTTCATGTAAGATATTTATCCACAGCTCTCCTCCGGGGACATCCACCCATGGTAAGTTTCCACTGTGAACCTGCATGGCTGGTTCCTTGAGGGACTCCATATTGATAACTACGCCTCTTAAGGCTTGTGCCTGACCTTGAAGAGAATGGCCGTGACCCCTTGCAGCAACTGTAAGTTCTGTGCCTGAACCCATCTGAAAAATATGCTTTAATGTAATTGAAATATCACGAAGTGAATGTGGATGTAGAACTGCTAAGGGTAGCATGTGATATCTTTTGCCAAAATCTTTAGCTGCTGCTTGATTGTTTTTAAAGCTAAAGTGTCCATCTAGGCTTATTGTTTCCAAGGATGAAAGCAGTTTAGAAGAAGATTGTATAGGAGGGTCACCAGTAGGCTCCCCGAAACATTTGGTGAAACAAAGGTTGGTTCTATAAGTAGCACAGTTCATGAAAAGAATAATGCAAATTTTGAAGAGTAAGATTTTGTTGTTGTTGAGAAAGCTAGGAAATGGTGACCGCATGTTTCTAAATATTGAGCTTCTCCTTGATTTCCTTTATGAGGCAAAGAAAAAAGAAGTGGTGTAGAAGAGCTCTAGGTAATTGGAGGTGGAAGAAGAGAATTTAAAGAGCTTGTTTGTCTAATGAGCAGTTTCAACTTTGGCTCAGACGTTATTTACTTGCTGTCTTGTCTTTGGGTAGGTGGGCATCTTTATTACCTCAGCTTTTTCTGGGATCTAATGTAAAGGCGGCATTTGGTTGAGATAACTGTTGCTGATGTCGTTTTTTTCTCTTTTCCCCCTCTTAAGAACAATATATTAGATAAGTGTCTTATTTTTTTCCCCTAAATAAGACACTTATCTTAATGAACTCTCGCACTTAATTTAAATACAACAGAAACTGTTTAGAAAATCATATTTGGTTTCTTTAGTTTTTCTTTTGTTCTCTTTGATAGCATTAGAATATTTCATTTATAAGATTTCCGTACAACATATTTGGACCATATTATCACTCGGACTGATGGAAACTGCAAAATTGGGTGAAGAATTCAAAGTGGAGACCGCTGTTGCTGAAAACATTAAGTATAAACTTGTATTGGAAGGAGAGAAGCAAGGGATGTTGAAGATTGTCGGGTGAGGCCTATTAAAAGCACTGTAAGTTGTTTTGAATAGTATTGATTCTATTATTATACTTGTTTTGAGAAAAGTCAGGTGACAAAGTGAGATGAACTGAAGCAAGATAAGAGTACAGTGGTGAGTTGAAATGGACCATCTGGAGTTCCTTGGGGATGTGATGTATTGAGAACGGTCCAAAGTCTTAAAGGTATTTGATCACTGTAAGTAAGGTCATGCGGGTCCCTCAACATGTGAACACCACGAGGAGCCCCACAGGTACAACAATTCTCCTCACTCTCACCTTTACTCTCCCAAGTTAAATTTTCAAGAAAATTCCTAGTTTCCATTCTGCTTAAAGGAACATGTTTATTTGTGTATTTTACACGCTTTACGATATCTTATACAAACTCTCTCTAGATTAAGAAGTTTGATTTGAAGAACATTAGTAGGGACAGTGATTAGAGTTCTGGTATGAAATCTATGCATTCTCTCTCTATGTGCAGCATTTTCTTCTCTAATATATACACCATATACCATGTAGGAGAGAAGGGTGGGAACAGATGGGTATGTGAGGCATATAAATCAATGTAGCACTAACAGAACATAGTACAATTATTGTAGTAGTTGTCTCTTGTGAGGAGAGGGGTTGTGACAGAAGCTTTAAAGAAATCACCTCGAACACCTCGTGGTAGAAAGCTACTCGGTCGCCCTACCAAGTTCTACAGATTGACATCCATCTTTTTGCAAGCTGCATTGATGTCGATGTGCCTTGGCCATTGGCCTTTTGAATGATAAGGATTCTGAATAGACAATTTCATGAGTTGATTTCCAAGAGGGAGTGAGTTCTGATTTTAGGATAACATTTTAATGCTTGCTGCTTCTGTGTGGTATTATTATCATTATTGTTGTCGTTGTTGATATCTTAGTCCCTACATCATTTTAGAAAAAGATTCACATTTAATATTTAGATCTGTGGCCCTCCCTCAATAATGCTACCTTTGTTGATGTGTCAAATCTTATCTCGGCTTATCTCGGCCTAGATTCTCCGTTCGATGCCTCGTCCAATAGCTTGCTTGTTCTTCCTATGAATCATGGCATGGAATTAGTTGAGGCATCAAAATTCTAATACTATATATGTTCGCATT

mRNA sequence

TACCTTCCCGGGATTCCAATGATTGGTATTCAAATTGCAAACGTGTTCGACGCGCGTCTTTATATTCCCATTACACGTTGCCCTCTGCCGCTCCACAAAACATCCAAGTGGAGGAGAGGAACCACCGTTAGAGATCGATAGCCTCTGCTATGGAAGTTCATCCGACCTCTTCACTCCAGGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAACGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTTCGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAGGCTACAATTCGCAGTGCTCGAGCATATGAAGGGCCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAGTTCCGCTTTGAGCATTTTGTTTGTGTCCAACTTCAGTCATTTGTAAGTACGGTTTGTTTACAAGGTCTATACAGGATCATGTTTTGTCTTATGTCACTTTAGGAAGATGTATTACTTTGTTGTGTCTTTGAATCAATAAAGATCACGACCCTTTCCAATGCAATCATCAAGATAGATAGATTTTGAGGGTGAATCTTTCAAAATTATGCTTGATATGATGTATTGGACCTTCGATTGTGATTTTAAATCCTAAACCTCTCGAGGACAAAGAACTCAAAGAGTCAAGACATTGAAAGTTTTTGTTCTGATTAATGGTAATATTACGACAGAATACATTTTAAATTTATTTGACCTTTCATATCATTTTGGCATTCTCTTCTTCTAGGATGCTCGTTTTGTGGTTTGTTTTAGATACAAGATGTTGTACAGGGGTGGCTTTCTGGAAGATCCTTTGTCCCGGGGCAAGGATTGATAATGGGTCATAGGCAGATTTCCTCTCCATCAGTACCCGCCATTTGGAGCCAAAATGAGCTTGCCACTCGTCTTGGGAGCTATAATGAGGCAGATATTGCGTACATCCAGGAAGATCCCTGACACAGTAGTCCAGAATTATTTGGTTTTGGGCTAAAATGTACTCTAAGCTTTGTTTTCCGGTTGAAGTTGGCAGTGCAGAAAATAAGAAACCCACTAGGTAGAATATTTCTTCGTCTGGTGTGACCACTGATGTTTTATTGTTCCACCTGTACAACCCAAACTGATTTGTATTAGGATGGGGAAATTGTAAGTGTAGAGTTTCTGGGACAAATCTATTGAAACAAGTACTTGGATTTGTTAACCGGGTAGATTAGTATGGGACCATTGGTAGAATCTGATAGAATTTTGTCAAACACCTCTGCAGCAAAATCATGTATTTTGCTTCTTGGGATCATTAGATTCATCCAAGGATGAGGAACCTCCCACAATCCTTTTTCCCTGAGTTTTTTCTCAGATATGTGCACTCTATCCAGAAACTCCACGTAAGGAACTTCCGACTGAAAGAGAGTAGCTGGAATGTACCTCAATTGTGATAGCAACTTCTCAATTCTCTGCACAATCACATAGAGTTTGGAAATGACATTATTTGGTTTTTTAACTGTTTTTTTGGCTGTTTGTCATGAGCTTGATATCTGATAATGTCTATGGAAATGCTCACCTTGTTCATAGTTTCTGTCTCTTCAGAGTTGAAGTACATGGCCATTTCTAGACAATACAGTGTCGCTCTATCTGAGACGAATTGGCTGGCTTGAACTGGATCTTTGGGATCAAATGAAGATCTCCAATTATTGAGAATGCCAGTTCTATTTATTAGAACAAAGCCTTCAATATAATCAAAGGAGTACTTGGTGGATATCAGATGTTCCTGGTCCTTGGAGAATATGGCGAAGTCTGAATACAAGGGTGTATTACCATTTTTGGTGCTGATTCTAGAGAAATCCTTGCCCTTGTGATGATGCCAAACTGACCAAGGCCTCCAAGTACGCTGTAAAACAGGTCTGCATTCTGCTGCGCTGAACAGAATTCAAAGTGGAGACCGCTGTTGCTGAAAACATTAAGTATAAACTTGTATTGGAAGGAGAGAAGCAAGGGATGTTGAAGATTGTCGGGTGAGGCCTATTAAAAGCACTGTAAGTTGTTTTGAATAGTATTGATTCTATTATTATACTTGTTTTGAGAAAAGTCAGGTGACAAAGTGAGATGAACTGAAGCAAGATAAGAGTACAGTGGTGAGTTGAAATGGACCATCTGGAGTTCCTTGGGGATGTGATGTATTGAGAACGGTCCAAAGTCTTAAAGGTATTTGATCACTGTAAGTAAGGTCATGCGGGTCCCTCAACATGTGAACACCACGAGGAGCCCCACAGGTACAACAATTCTCCTCACTCTCACCTTTACTCTCCCAAGTTAAATTTTCAAGAAAATTCCTAGTTTCCATTCTGCTTAAAGGAACATGTTTATTTGTGTATTTTACACGCTTTACGATATCTTATACAAACTCTCTCTAGATTAAGAAGTTTGATTTGAAGAACATTAGTAGGGACAGTGATTAGAGTTCTGGTATGAAATCTATGCATTCTCTCTCTATGTGCAGCATTTTCTTCTCTAATATATACACCATATACCATGTAGGAGAGAAGGGTGGGAACAGATGGGTATGTGAGGCATATAAATCAATGTAGCACTAACAGAACATAGTACAATTATTGTAGTAGTTGTCTCTTGTGAGGAGAGGGGTTGTGACAGAAGCTTTAAAGAAATCACCTCGAACACCTCGTGGTAGAAAGCTACTCGGTCGCCCTACCAAGTTCTACAGATTGACATCCATCTTTTTGCAAGCTGCATTGATGTCGATGTGCCTTGGCCATTGGCCTTTTGAATGATAAGGATTCTGAATAGACAATTTCATGAGTTGATTTCCAAGAGGGAGTGAGTTCTGATTTTAGGATAACATTTTAATGCTTGCTGCTTCTGTGTGGTATTATTATCATTATTGTTGTCGTTGTTGATATCTTAGTCCCTACATCATTTTAGAAAAAGATTCACATTTAATATTTAGATCTGTGGCCCTCCCTCAATAATGCTACCTTTGTTGATGTGTCAAATCTTATCTCGGCTTATCTCGGCCTAGATTCTCCGTTCGATGCCTCGTCCAATAGCTTGCTTGTTCTTCCTATGAATCATGGCATGGAATTAGTTGAGGCATCAAAATTCTAATACTATATATGTTCGCATT

Coding sequence (CDS)

ATGGAAGTTCATCCGACCTCTTCACTCCAGGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAACGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTTCGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAGGCTACAATTCGCAGTGCTCGAGCATATGAAGGGCCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

Protein sequence

MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETSMEASMSADDVFRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE
Homology
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BLAST of Cp4.1LG03g08320 vs. TrEMBL
Match: A0A0A0LBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823040 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.5e-42
Identity = 92/116 (79.31%), Postives = 104/116 (89.66%), Query Frame = 1 

Query: 11  DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETSMEASMSADDV 70
           D+R+D SVMVEK+V ESVSS P+DVQTNR  ENV+K EP+Q++ + GE +MEASMSADDV
Sbjct: 7   DKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEINMEASMSADDV 66

Query: 71  FRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
            RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]
BLAST of Cp4.1LG03g08320 vs. TrEMBL
Match: A0A151SB39_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026080 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1 

Query: 21  EKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETSMEASMSADDVFRAGGFGARD 80
           +K V ++ + S QDV    ++ N  K    ++I   G+ +MEAS++ADDV RAGGFGARD
Sbjct: 38  DKGVLKNFTRSSQDV--TETKINCPKGTRPEEIDASGDVNMEASITADDVIRAGGFGARD 97

Query: 81  DIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           DI SFLPVASDSTDFEA+IR AR YE PQG++SRPGLGW +ATK E
Sbjct: 98  DISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTDATKRE 141

[Close]
BLAST of Cp4.1LG03g08320 vs. TrEMBL
Match: F6HS73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0252g00050 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 38  NRSRENVMKTEPSQQIGIDGETSMEASMSADDVFRAGGFGARDDIGSFLPVASDSTDFEA 97
           ++S EN+++   ++ +   GE +MEAS++ DDV RAGGFGARDDI SFLPVASDSTDFEA
Sbjct: 35  SKSGENIVQGGANEDMDTSGEVNMEASITPDDVIRAGGFGARDDISSFLPVASDSTDFEA 94

Query: 98  TIRSARAYEGPQGEISRPGLGWKEATKT 126
           ++R AR YE PQG+I RPGLGW E TK+
Sbjct: 95  SLRDARDYEEPQGDIYRPGLGWTETTKS 122

[Close]
BLAST of Cp4.1LG03g08320 vs. TrEMBL
Match: A5AZW0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025506 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 38  NRSRENVMKTEPSQQIGIDGETSMEASMSADDVFRAGGFGARDDIGSFLPVASDSTDFEA 97
           ++S EN+++   ++ +   GE +MEAS++ DDV RAGGFGARDDI SFLPVASDSTDFEA
Sbjct: 131 SKSGENIVQGGANEDMDTSGEVNMEASITPDDVIRAGGFGARDDISSFLPVASDSTDFEA 190

Query: 98  TIRSARAYEGPQGEISRPGLGWKEATKT 126
           ++R AR YE PQG+I RPGLGW E TK+
Sbjct: 191 SLRDARDYEEPQGDIYRPGLGWTETTKS 218

[Close]
BLAST of Cp4.1LG03g08320 vs. TrEMBL
Match: A0A0B2PDJ7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012633 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1 

Query: 16  PSVMVEKEVTESVSSSPQDVQTNR------SRENVMKTEPSQQIGIDGETSMEASMSADD 75
           P + V+K V ++ + S  DV   +        EN  K    ++I   G+ +MEAS++ DD
Sbjct: 28  PEIGVDKGVLKNFTRSSGDVAETKIAADWKGGENCPKGTRPEEIDASGDVNMEASITPDD 87

Query: 76  VFRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           V RAGGFGARDDI SFLPVASDSTDFEA+IR AR YE PQG++SRPGLGW  ATK E
Sbjct: 88  VIRAGGFGARDDISSFLPVASDSTDFEASIRDARDYEEPQGQVSRPGLGWTGATKGE 144

[Close]
BLAST of Cp4.1LG03g08320 vs. TAIR10
Match: AT5G04000.2 (AT5G04000.2 unknown protein)

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-21
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 57  GETSMEASMSADDVFRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPG 116
           GE +MEAS+SA+DV RAGGFGA+DDIGSFLPVASDSTDFE +IRSAR YE  Q E+ RPG
Sbjct: 53  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 112

Query: 117 LGW 120
           LG+
Sbjct: 113 LGY 115

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BLAST of Cp4.1LG03g08320 vs. NCBI nr
Match: gi|659085272|ref|XP_008443333.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X1 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-48
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETS 60
           ME+HPTSSL DER+D SVMVEK+VTESVSS P+D+QTNR RENV+K EP++QI + GE +
Sbjct: 41  MELHPTSSLPDERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEIN 100

Query: 61  MEASMSADDVFRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120
           MEASMSADDV RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWK
Sbjct: 101 MEASMSADDVLRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWK 160

Query: 121 EATKTE 127
           EATKTE
Sbjct: 161 EATKTE 166

[Close]
BLAST of Cp4.1LG03g08320 vs. NCBI nr
Match: gi|449437781|ref|XP_004136669.1| (PREDICTED: uncharacterized protein LOC101207074 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-45
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 1 

Query: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETS 60
           ME+H TSSL D+R+D SVMVEK+V ESVSS P+DVQTNR  ENV+K EP+Q++ + GE +
Sbjct: 1   MELHRTSSLPDKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEIN 60

Query: 61  MEASMSADDVFRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120
           MEASMSADDV RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWK
Sbjct: 61  MEASMSADDVLRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWK 120

Query: 121 EATKTE 127
           EATKTE
Sbjct: 121 EATKTE 126

[Close]
BLAST of Cp4.1LG03g08320 vs. NCBI nr
Match: gi|659085274|ref|XP_008443334.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X2 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-43
Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = 1 

Query: 11  DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETSMEASMSADDV 70
           DER+D SVMVEK+VTESVSS P+D+QTNR RENV+K EP++QI + GE +MEASMSADDV
Sbjct: 7   DERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEINMEASMSADDV 66

Query: 71  FRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
            RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

[Close]
BLAST of Cp4.1LG03g08320 vs. NCBI nr
Match: gi|659085276|ref|XP_008443335.1| (PREDICTED: uncharacterized protein LOC103486945 isoform X3 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 9.7e-43
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 1 

Query: 12  EREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETSMEASMSADDVF 71
           ER+D SVMVEK+VTESVSS P+D+QTNR RENV+K EP++QI + GE +MEASMSADDV 
Sbjct: 3   ERDDSSVMVEKDVTESVSSLPKDLQTNRGRENVVKAEPTRQIDMAGEINMEASMSADDVL 62

Query: 72  RAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 63  RAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 117

[Close]
BLAST of Cp4.1LG03g08320 vs. NCBI nr
Match: gi|700204372|gb|KGN59505.1| (hypothetical protein Csa_3G823040 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 92/116 (79.31%), Postives = 104/116 (89.66%), Query Frame = 1 

Query: 11  DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGETSMEASMSADDV 70
           D+R+D SVMVEK+V ESVSS P+DVQTNR  ENV+K EP+Q++ + GE +MEASMSADDV
Sbjct: 7   DKRDDSSVMVEKDVAESVSSLPKDVQTNRGGENVVKAEPTQRVDMAGEINMEASMSADDV 66

Query: 71  FRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
            RAGGFGARD+IGSFLPVASDSTDFEATI +AR YEGPQGEISRPGLGWKEATKTE
Sbjct: 67  LRAGGFGARDEIGSFLPVASDSTDFEATILNARDYEGPQGEISRPGLGWKEATKTE 122

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g08320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g08320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBZ5_CUCSA7.5e-4279.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823040 PE=4 SV=1[more]
A0A151SB39_CAJCA1.6e-2359.43Uncharacterized protein OS=Cajanus cajan GN=KK1_026080 PE=4 SV=1[more]
F6HS73_VITVI1.7e-2262.50Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0252g00050 PE=4 SV=... [more]
A5AZW0_VITVI1.7e-2262.50Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025506 PE=4 SV=1[more]
A0A0B2PDJ7_GLYSO1.7e-2254.70Uncharacterized protein OS=Glycine soja GN=glysoja_012633 PE=4 SV=1[more]
BLAST of Cp4.1LG03g08320 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04000.23.8e-2176.19 unknown protein[more]
BLAST of Cp4.1LG03g08320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085272|ref|XP_008443333.1|4.5e-4881.75PREDICTED: uncharacterized protein LOC103486945 isoform X1 [Cucumis melo][more]
gi|449437781|ref|XP_004136669.1|2.1e-4578.57PREDICTED: uncharacterized protein LOC101207074 [Cucumis sativus][more]
gi|659085274|ref|XP_008443334.1|2.6e-4381.90PREDICTED: uncharacterized protein LOC103486945 isoform X2 [Cucumis melo][more]
gi|659085276|ref|XP_008443335.1|9.7e-4381.74PREDICTED: uncharacterized protein LOC103486945 isoform X3 [Cucumis melo][more]
gi|700204372|gb|KGN59505.1|1.1e-4179.31hypothetical protein Csa_3G823040 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g08320.1Cp4.1LG03g08320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37250FAMILY NOT NAMEDcoord: 1..126
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g08320CmaCh14G005540Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g08320CsaV3_3G040800Cucumber (Chinese Long) v3cpecucB0747
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g08320Cucumber (Gy14) v1cgycpeB0888
Cp4.1LG03g08320Cucurbita maxima (Rimu)cmacpeB682
Cp4.1LG03g08320Cucurbita maxima (Rimu)cmacpeB841
Cp4.1LG03g08320Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g08320Cucurbita moschata (Rifu)cmocpeB789
Cp4.1LG03g08320Wild cucumber (PI 183967)cpecpiB599
Cp4.1LG03g08320Cucumber (Chinese Long) v2cpecuB597
Cp4.1LG03g08320Bottle gourd (USVL1VR-Ls)cpelsiB489
Cp4.1LG03g08320Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g08320Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g08320Melon (DHL92) v3.6.1cpemedB679
Cp4.1LG03g08320Watermelon (97103) v1cpewmB597
Cp4.1LG03g08320Melon (DHL92) v3.5.1cpemeB572
Cp4.1LG03g08320Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g08320Silver-seed gourdcarcpeB0444
Cp4.1LG03g08320Silver-seed gourdcarcpeB0613
Cp4.1LG03g08320Wax gourdcpewgoB0743
Cp4.1LG03g08320Wax gourdcpewgoB0756